Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04366 and OHPLBJKB_04367 overlap by 8 nucleotides OHPLBJKB_04367 and OHPLBJKB_04368 are separated by 174 nucleotides OHPLBJKB_04368 and OHPLBJKB_04369 are separated by 4 nucleotides OHPLBJKB_04369 and OHPLBJKB_04370 are separated by 36 nucleotides OHPLBJKB_04370 and OHPLBJKB_04371 are separated by 109 nucleotides
OHPLBJKB_04366: OHPLBJKB_04366 - hypothetical protein, at 23,566 to 24,168
_04366
OHPLBJKB_04367: OHPLBJKB_04367 - hypothetical protein, at 24,161 to 24,574
_04367
OHPLBJKB_04368: OHPLBJKB_04368 - hypothetical protein, at 24,749 to 25,144
_04368
OHPLBJKB_04369: OHPLBJKB_04369 - hypothetical protein, at 25,149 to 25,274
_04369
OHPLBJKB_04370: OHPLBJKB_04370 - hypothetical protein, at 25,311 to 25,721
_04370
OHPLBJKB_04371: OHPLBJKB_04371 - Cyclic di-GMP phosphodiesterase PdeL, at 25,831 to 26,892
_04371
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 23.845 kb on - strand, within OHPLBJKB_04366 at 23.928 kb on - strand, within OHPLBJKB_04366 at 24.088 kb on + strand, within OHPLBJKB_04366 at 24.093 kb on + strand, within OHPLBJKB_04366 at 24.491 kb on - strand, within OHPLBJKB_04367 at 24.499 kb on + strand, within OHPLBJKB_04367 at 24.510 kb on + strand, within OHPLBJKB_04367 at 24.829 kb on + strand, within OHPLBJKB_04368 at 25.031 kb on - strand, within OHPLBJKB_04368 at 25.066 kb on + strand, within OHPLBJKB_04368 at 25.066 kb on + strand, within OHPLBJKB_04368 at 25.126 kb on - strand at 25.253 kb on - strand, within OHPLBJKB_04369 at 25.295 kb on - strand at 25.368 kb on - strand, within OHPLBJKB_04370 at 25.771 kb on + strand at 25.928 kb on + strand at 25.986 kb on + strand, within OHPLBJKB_04371
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 23,845 - OHPLBJKB_04366 0.46 +0.8 23,928 - OHPLBJKB_04366 0.60 +0.4 24,088 + OHPLBJKB_04366 0.87 +0.4 24,093 + OHPLBJKB_04366 0.87 -1.0 24,491 - OHPLBJKB_04367 0.80 -0.4 24,499 + OHPLBJKB_04367 0.82 -0.6 24,510 + OHPLBJKB_04367 0.84 -0.1 24,829 + OHPLBJKB_04368 0.20 -1.2 25,031 - OHPLBJKB_04368 0.71 -0.8 25,066 + OHPLBJKB_04368 0.80 -0.7 25,066 + OHPLBJKB_04368 0.80 -2.7 25,126 - -1.8 25,253 - OHPLBJKB_04369 0.83 +0.4 25,295 - +1.5 25,368 - OHPLBJKB_04370 0.14 -0.6 25,771 + +0.2 25,928 + -0.1 25,986 + OHPLBJKB_04371 0.15 -0.6
Or see this region's nucleotide sequence