Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03172

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03171 and OHPLBJKB_03172 are separated by 99 nucleotidesOHPLBJKB_03172 and OHPLBJKB_03173 are separated by 12 nucleotides OHPLBJKB_03171: OHPLBJKB_03171 - 2-hydroxy-3-oxopropionate reductase, at 3,305,597 to 3,306,475 _03171 OHPLBJKB_03172: OHPLBJKB_03172 - Hydroxypyruvate isomerase, at 3,306,575 to 3,307,351 _03172 OHPLBJKB_03173: OHPLBJKB_03173 - Glyoxylate carboligase, at 3,307,364 to 3,309,145 _03173 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -1 0 1 2at 3305.609 kb on - strandat 3305.683 kb on + strandat 3305.691 kb on - strand, within OHPLBJKB_03171at 3305.809 kb on + strand, within OHPLBJKB_03171at 3305.839 kb on + strand, within OHPLBJKB_03171at 3305.938 kb on + strand, within OHPLBJKB_03171at 3306.011 kb on - strand, within OHPLBJKB_03171at 3306.041 kb on - strand, within OHPLBJKB_03171at 3306.076 kb on + strand, within OHPLBJKB_03171at 3306.203 kb on - strand, within OHPLBJKB_03171at 3306.280 kb on + strand, within OHPLBJKB_03171at 3306.280 kb on + strand, within OHPLBJKB_03171at 3306.280 kb on + strand, within OHPLBJKB_03171at 3306.280 kb on + strand, within OHPLBJKB_03171at 3306.280 kb on + strand, within OHPLBJKB_03171at 3306.296 kb on - strand, within OHPLBJKB_03171at 3306.362 kb on + strand, within OHPLBJKB_03171at 3306.363 kb on - strand, within OHPLBJKB_03171at 3306.445 kb on + strandat 3306.453 kb on - strandat 3306.479 kb on + strandat 3306.489 kb on + strandat 3306.630 kb on + strandat 3306.631 kb on - strandat 3306.631 kb on - strandat 3306.920 kb on - strand, within OHPLBJKB_03172at 3306.958 kb on + strand, within OHPLBJKB_03172at 3306.958 kb on + strand, within OHPLBJKB_03172at 3307.091 kb on + strand, within OHPLBJKB_03172at 3307.091 kb on + strand, within OHPLBJKB_03172at 3307.091 kb on + strand, within OHPLBJKB_03172at 3307.371 kb on + strandat 3307.523 kb on + strandat 3307.593 kb on - strand, within OHPLBJKB_03173at 3307.677 kb on + strand, within OHPLBJKB_03173at 3307.685 kb on - strand, within OHPLBJKB_03173at 3307.729 kb on + strand, within OHPLBJKB_03173at 3307.740 kb on - strand, within OHPLBJKB_03173at 3307.749 kb on + strand, within OHPLBJKB_03173at 3307.884 kb on - strand, within OHPLBJKB_03173at 3307.980 kb on + strand, within OHPLBJKB_03173at 3307.981 kb on - strand, within OHPLBJKB_03173at 3308.019 kb on + strand, within OHPLBJKB_03173at 3308.020 kb on - strand, within OHPLBJKB_03173at 3308.020 kb on - strand, within OHPLBJKB_03173at 3308.074 kb on + strand, within OHPLBJKB_03173at 3308.074 kb on + strand, within OHPLBJKB_03173at 3308.075 kb on - strand, within OHPLBJKB_03173at 3308.272 kb on - strand, within OHPLBJKB_03173

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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3,305,609 - +0.4
3,305,683 + -0.0
3,305,691 - OHPLBJKB_03171 0.11 +0.1
3,305,809 + OHPLBJKB_03171 0.24 +1.2
3,305,839 + OHPLBJKB_03171 0.28 +0.6
3,305,938 + OHPLBJKB_03171 0.39 -0.9
3,306,011 - OHPLBJKB_03171 0.47 -0.0
3,306,041 - OHPLBJKB_03171 0.51 -0.1
3,306,076 + OHPLBJKB_03171 0.54 -0.3
3,306,203 - OHPLBJKB_03171 0.69 -1.4
3,306,280 + OHPLBJKB_03171 0.78 +0.1
3,306,280 + OHPLBJKB_03171 0.78 +0.7
3,306,280 + OHPLBJKB_03171 0.78 -0.3
3,306,280 + OHPLBJKB_03171 0.78 -0.1
3,306,280 + OHPLBJKB_03171 0.78 +0.4
3,306,296 - OHPLBJKB_03171 0.80 +0.3
3,306,362 + OHPLBJKB_03171 0.87 +0.8
3,306,363 - OHPLBJKB_03171 0.87 +0.5
3,306,445 + -0.3
3,306,453 - +0.8
3,306,479 + +0.2
3,306,489 + -1.0
3,306,630 + +2.1
3,306,631 - -0.3
3,306,631 - -0.2
3,306,920 - OHPLBJKB_03172 0.44 -0.1
3,306,958 + OHPLBJKB_03172 0.49 -1.5
3,306,958 + OHPLBJKB_03172 0.49 +0.5
3,307,091 + OHPLBJKB_03172 0.66 +0.5
3,307,091 + OHPLBJKB_03172 0.66 -1.1
3,307,091 + OHPLBJKB_03172 0.66 -1.1
3,307,371 + +0.4
3,307,523 + -0.4
3,307,593 - OHPLBJKB_03173 0.13 +1.5
3,307,677 + OHPLBJKB_03173 0.18 +0.3
3,307,685 - OHPLBJKB_03173 0.18 +0.2
3,307,729 + OHPLBJKB_03173 0.20 -0.1
3,307,740 - OHPLBJKB_03173 0.21 -0.6
3,307,749 + OHPLBJKB_03173 0.22 -0.4
3,307,884 - OHPLBJKB_03173 0.29 +0.6
3,307,980 + OHPLBJKB_03173 0.35 +0.5
3,307,981 - OHPLBJKB_03173 0.35 -0.6
3,308,019 + OHPLBJKB_03173 0.37 -0.2
3,308,020 - OHPLBJKB_03173 0.37 -0.3
3,308,020 - OHPLBJKB_03173 0.37 -0.2
3,308,074 + OHPLBJKB_03173 0.40 +0.2
3,308,074 + OHPLBJKB_03173 0.40 +0.9
3,308,075 - OHPLBJKB_03173 0.40 -0.4
3,308,272 - OHPLBJKB_03173 0.51 +0.1

Or see this region's nucleotide sequence