Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02995

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02993 and OHPLBJKB_02994 overlap by 1 nucleotidesOHPLBJKB_02994 and OHPLBJKB_02995 overlap by 7 nucleotidesOHPLBJKB_02995 and OHPLBJKB_02996 are separated by 380 nucleotidesOHPLBJKB_02996 and OHPLBJKB_02997 are separated by 205 nucleotides OHPLBJKB_02993: OHPLBJKB_02993 - Succinate dehydrogenase flavoprotein subunit, at 3,118,880 to 3,120,646 _02993 OHPLBJKB_02994: OHPLBJKB_02994 - Succinate dehydrogenase hydrophobic membrane anchor subunit, at 3,120,646 to 3,120,993 _02994 OHPLBJKB_02995: OHPLBJKB_02995 - Succinate dehydrogenase cytochrome b556 subunit, at 3,120,987 to 3,121,391 _02995 OHPLBJKB_02996: OHPLBJKB_02996 - hypothetical protein, at 3,121,772 to 3,121,879 _02996 OHPLBJKB_02997: OHPLBJKB_02997 - Citrate synthase, at 3,122,085 to 3,123,368 _02997 Position (kb) 3120 3121 3122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3119.996 kb on - strand, within OHPLBJKB_02993at 3120.025 kb on + strand, within OHPLBJKB_02993at 3120.072 kb on + strand, within OHPLBJKB_02993at 3120.073 kb on - strand, within OHPLBJKB_02993at 3120.106 kb on + strand, within OHPLBJKB_02993at 3120.106 kb on + strand, within OHPLBJKB_02993at 3120.107 kb on - strand, within OHPLBJKB_02993at 3120.169 kb on + strand, within OHPLBJKB_02993at 3120.303 kb on + strand, within OHPLBJKB_02993at 3120.303 kb on + strand, within OHPLBJKB_02993at 3120.304 kb on - strand, within OHPLBJKB_02993at 3120.304 kb on - strand, within OHPLBJKB_02993at 3120.304 kb on - strand, within OHPLBJKB_02993at 3120.307 kb on + strand, within OHPLBJKB_02993at 3120.307 kb on + strand, within OHPLBJKB_02993at 3120.308 kb on - strand, within OHPLBJKB_02993at 3120.379 kb on + strand, within OHPLBJKB_02993at 3120.380 kb on - strand, within OHPLBJKB_02993at 3120.380 kb on - strand, within OHPLBJKB_02993at 3120.380 kb on - strand, within OHPLBJKB_02993at 3120.385 kb on + strand, within OHPLBJKB_02993at 3120.385 kb on + strand, within OHPLBJKB_02993at 3120.385 kb on + strand, within OHPLBJKB_02993at 3120.385 kb on + strand, within OHPLBJKB_02993at 3120.385 kb on + strand, within OHPLBJKB_02993at 3120.385 kb on + strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.386 kb on - strand, within OHPLBJKB_02993at 3120.387 kb on + strand, within OHPLBJKB_02993at 3120.387 kb on + strand, within OHPLBJKB_02993at 3120.387 kb on + strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.388 kb on - strand, within OHPLBJKB_02993at 3120.415 kb on - strand, within OHPLBJKB_02993at 3120.415 kb on - strand, within OHPLBJKB_02993at 3120.415 kb on - strand, within OHPLBJKB_02993at 3120.438 kb on + strand, within OHPLBJKB_02993at 3120.438 kb on + strand, within OHPLBJKB_02993at 3120.438 kb on + strand, within OHPLBJKB_02993at 3120.438 kb on + strand, within OHPLBJKB_02993at 3120.438 kb on + strand, within OHPLBJKB_02993at 3120.439 kb on - strand, within OHPLBJKB_02993at 3120.439 kb on - strand, within OHPLBJKB_02993at 3120.439 kb on - strand, within OHPLBJKB_02993at 3120.439 kb on - strand, within OHPLBJKB_02993at 3120.442 kb on + strand, within OHPLBJKB_02993at 3120.442 kb on + strand, within OHPLBJKB_02993at 3120.442 kb on + strand, within OHPLBJKB_02993at 3120.443 kb on - strand, within OHPLBJKB_02993at 3120.443 kb on - strand, within OHPLBJKB_02993at 3120.458 kb on - strand, within OHPLBJKB_02993at 3120.469 kb on + strand, within OHPLBJKB_02993at 3120.470 kb on - strandat 3120.590 kb on - strandat 3120.590 kb on - strandat 3120.674 kb on + strandat 3120.674 kb on + strandat 3120.683 kb on + strand, within OHPLBJKB_02994at 3120.684 kb on - strand, within OHPLBJKB_02994at 3120.684 kb on - strand, within OHPLBJKB_02994at 3120.741 kb on + strand, within OHPLBJKB_02994at 3120.747 kb on - strand, within OHPLBJKB_02994at 3120.747 kb on - strand, within OHPLBJKB_02994at 3120.860 kb on + strand, within OHPLBJKB_02994at 3120.861 kb on - strand, within OHPLBJKB_02994at 3120.861 kb on - strand, within OHPLBJKB_02994at 3120.861 kb on - strand, within OHPLBJKB_02994at 3120.861 kb on - strand, within OHPLBJKB_02994at 3120.861 kb on - strand, within OHPLBJKB_02994at 3120.861 kb on - strand, within OHPLBJKB_02994at 3120.897 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.899 kb on + strand, within OHPLBJKB_02994at 3120.900 kb on - strand, within OHPLBJKB_02994at 3120.900 kb on - strand, within OHPLBJKB_02994at 3120.900 kb on - strand, within OHPLBJKB_02994at 3120.900 kb on - strand, within OHPLBJKB_02994at 3120.900 kb on - strand, within OHPLBJKB_02994at 3120.900 kb on - strand, within OHPLBJKB_02994at 3120.908 kb on + strand, within OHPLBJKB_02994at 3120.908 kb on + strand, within OHPLBJKB_02994at 3120.908 kb on + strand, within OHPLBJKB_02994at 3120.908 kb on + strand, within OHPLBJKB_02994at 3120.909 kb on - strand, within OHPLBJKB_02994at 3120.909 kb on - strand, within OHPLBJKB_02994at 3120.909 kb on - strand, within OHPLBJKB_02994at 3120.909 kb on - strand, within OHPLBJKB_02994at 3120.909 kb on - strand, within OHPLBJKB_02994at 3120.955 kb on + strand, within OHPLBJKB_02994at 3120.955 kb on + strand, within OHPLBJKB_02994at 3120.955 kb on + strand, within OHPLBJKB_02994at 3120.989 kb on - strandat 3120.994 kb on - strandat 3121.031 kb on + strand, within OHPLBJKB_02995at 3121.112 kb on + strand, within OHPLBJKB_02995at 3121.113 kb on - strand, within OHPLBJKB_02995at 3121.129 kb on + strand, within OHPLBJKB_02995at 3121.129 kb on + strand, within OHPLBJKB_02995at 3121.160 kb on + strand, within OHPLBJKB_02995at 3121.333 kb on - strand, within OHPLBJKB_02995at 3121.343 kb on + strand, within OHPLBJKB_02995at 3121.400 kb on + strandat 3121.400 kb on + strandat 3121.401 kb on - strandat 3121.401 kb on - strandat 3121.404 kb on - strandat 3121.504 kb on + strandat 3121.556 kb on - strandat 3121.556 kb on - strandat 3121.641 kb on - strandat 3121.644 kb on + strandat 3121.768 kb on + strandat 3121.770 kb on + strandat 3121.804 kb on + strand, within OHPLBJKB_02996at 3121.816 kb on - strand, within OHPLBJKB_02996at 3121.816 kb on - strand, within OHPLBJKB_02996at 3121.816 kb on - strand, within OHPLBJKB_02996at 3121.820 kb on - strand, within OHPLBJKB_02996at 3121.893 kb on + strandat 3122.000 kb on - strandat 3122.040 kb on + strandat 3122.040 kb on + strandat 3122.083 kb on - strandat 3122.083 kb on - strandat 3122.262 kb on - strand, within OHPLBJKB_02997at 3122.279 kb on + strand, within OHPLBJKB_02997at 3122.279 kb on + strand, within OHPLBJKB_02997at 3122.327 kb on + strand, within OHPLBJKB_02997at 3122.327 kb on + strand, within OHPLBJKB_02997at 3122.327 kb on + strand, within OHPLBJKB_02997at 3122.327 kb on + strand, within OHPLBJKB_02997at 3122.327 kb on + strand, within OHPLBJKB_02997at 3122.328 kb on - strand, within OHPLBJKB_02997at 3122.328 kb on - strand, within OHPLBJKB_02997at 3122.346 kb on + strand, within OHPLBJKB_02997at 3122.346 kb on + strand, within OHPLBJKB_02997at 3122.347 kb on - strand, within OHPLBJKB_02997at 3122.347 kb on - strand, within OHPLBJKB_02997at 3122.347 kb on - strand, within OHPLBJKB_02997at 3122.348 kb on + strand, within OHPLBJKB_02997at 3122.348 kb on + strand, within OHPLBJKB_02997at 3122.349 kb on - strand, within OHPLBJKB_02997at 3122.386 kb on - strand, within OHPLBJKB_02997

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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3,119,996 - OHPLBJKB_02993 0.63 -0.5
3,120,025 + OHPLBJKB_02993 0.65 +0.3
3,120,072 + OHPLBJKB_02993 0.67 -0.5
3,120,073 - OHPLBJKB_02993 0.68 -0.0
3,120,106 + OHPLBJKB_02993 0.69 -0.5
3,120,106 + OHPLBJKB_02993 0.69 +1.9
3,120,107 - OHPLBJKB_02993 0.69 -0.4
3,120,169 + OHPLBJKB_02993 0.73 +0.7
3,120,303 + OHPLBJKB_02993 0.81 -0.1
3,120,303 + OHPLBJKB_02993 0.81 +0.1
3,120,304 - OHPLBJKB_02993 0.81 +0.5
3,120,304 - OHPLBJKB_02993 0.81 +0.3
3,120,304 - OHPLBJKB_02993 0.81 +1.1
3,120,307 + OHPLBJKB_02993 0.81 -0.1
3,120,307 + OHPLBJKB_02993 0.81 -1.2
3,120,308 - OHPLBJKB_02993 0.81 +0.6
3,120,379 + OHPLBJKB_02993 0.85 +1.6
3,120,380 - OHPLBJKB_02993 0.85 +0.9
3,120,380 - OHPLBJKB_02993 0.85 +0.1
3,120,380 - OHPLBJKB_02993 0.85 +2.2
3,120,385 + OHPLBJKB_02993 0.85 -0.1
3,120,385 + OHPLBJKB_02993 0.85 -0.4
3,120,385 + OHPLBJKB_02993 0.85 -0.9
3,120,385 + OHPLBJKB_02993 0.85 +0.1
3,120,385 + OHPLBJKB_02993 0.85 -0.3
3,120,385 + OHPLBJKB_02993 0.85 +0.0
3,120,386 - OHPLBJKB_02993 0.85 -0.5
3,120,386 - OHPLBJKB_02993 0.85 +0.4
3,120,386 - OHPLBJKB_02993 0.85 -2.8
3,120,386 - OHPLBJKB_02993 0.85 +0.3
3,120,386 - OHPLBJKB_02993 0.85 -0.3
3,120,386 - OHPLBJKB_02993 0.85 +0.9
3,120,386 - OHPLBJKB_02993 0.85 -0.8
3,120,386 - OHPLBJKB_02993 0.85 -0.2
3,120,386 - OHPLBJKB_02993 0.85 -0.0
3,120,386 - OHPLBJKB_02993 0.85 +0.9
3,120,387 + OHPLBJKB_02993 0.85 -0.1
3,120,387 + OHPLBJKB_02993 0.85 -0.8
3,120,387 + OHPLBJKB_02993 0.85 +0.8
3,120,388 - OHPLBJKB_02993 0.85 -0.3
3,120,388 - OHPLBJKB_02993 0.85 -0.1
3,120,388 - OHPLBJKB_02993 0.85 -1.6
3,120,388 - OHPLBJKB_02993 0.85 +0.1
3,120,388 - OHPLBJKB_02993 0.85 -0.6
3,120,388 - OHPLBJKB_02993 0.85 +0.4
3,120,388 - OHPLBJKB_02993 0.85 -1.1
3,120,415 - OHPLBJKB_02993 0.87 +0.3
3,120,415 - OHPLBJKB_02993 0.87 -1.0
3,120,415 - OHPLBJKB_02993 0.87 -0.4
3,120,438 + OHPLBJKB_02993 0.88 +0.4
3,120,438 + OHPLBJKB_02993 0.88 -1.1
3,120,438 + OHPLBJKB_02993 0.88 -0.7
3,120,438 + OHPLBJKB_02993 0.88 +0.0
3,120,438 + OHPLBJKB_02993 0.88 -1.1
3,120,439 - OHPLBJKB_02993 0.88 -0.8
3,120,439 - OHPLBJKB_02993 0.88 -0.5
3,120,439 - OHPLBJKB_02993 0.88 +0.3
3,120,439 - OHPLBJKB_02993 0.88 +1.1
3,120,442 + OHPLBJKB_02993 0.88 -1.0
3,120,442 + OHPLBJKB_02993 0.88 +0.6
3,120,442 + OHPLBJKB_02993 0.88 +0.5
3,120,443 - OHPLBJKB_02993 0.88 -0.1
3,120,443 - OHPLBJKB_02993 0.88 -0.2
3,120,458 - OHPLBJKB_02993 0.89 -0.8
3,120,469 + OHPLBJKB_02993 0.90 -0.7
3,120,470 - +0.3
3,120,590 - -0.0
3,120,590 - -2.1
3,120,674 + +0.0
3,120,674 + +0.5
3,120,683 + OHPLBJKB_02994 0.11 +1.4
3,120,684 - OHPLBJKB_02994 0.11 +1.3
3,120,684 - OHPLBJKB_02994 0.11 -0.7
3,120,741 + OHPLBJKB_02994 0.27 +2.2
3,120,747 - OHPLBJKB_02994 0.29 -0.3
3,120,747 - OHPLBJKB_02994 0.29 +0.4
3,120,860 + OHPLBJKB_02994 0.61 -0.6
3,120,861 - OHPLBJKB_02994 0.62 +0.7
3,120,861 - OHPLBJKB_02994 0.62 -1.2
3,120,861 - OHPLBJKB_02994 0.62 +0.6
3,120,861 - OHPLBJKB_02994 0.62 -0.4
3,120,861 - OHPLBJKB_02994 0.62 +0.7
3,120,861 - OHPLBJKB_02994 0.62 +0.3
3,120,897 + OHPLBJKB_02994 0.72 +0.6
3,120,899 + OHPLBJKB_02994 0.73 -1.6
3,120,899 + OHPLBJKB_02994 0.73 -0.3
3,120,899 + OHPLBJKB_02994 0.73 -0.3
3,120,899 + OHPLBJKB_02994 0.73 +0.7
3,120,899 + OHPLBJKB_02994 0.73 -0.8
3,120,899 + OHPLBJKB_02994 0.73 -0.4
3,120,899 + OHPLBJKB_02994 0.73 +0.6
3,120,900 - OHPLBJKB_02994 0.73 -1.1
3,120,900 - OHPLBJKB_02994 0.73 -0.0
3,120,900 - OHPLBJKB_02994 0.73 +0.3
3,120,900 - OHPLBJKB_02994 0.73 -1.4
3,120,900 - OHPLBJKB_02994 0.73 +0.3
3,120,900 - OHPLBJKB_02994 0.73 +0.4
3,120,908 + OHPLBJKB_02994 0.75 +1.1
3,120,908 + OHPLBJKB_02994 0.75 -0.8
3,120,908 + OHPLBJKB_02994 0.75 +0.9
3,120,908 + OHPLBJKB_02994 0.75 +0.4
3,120,909 - OHPLBJKB_02994 0.76 -0.4
3,120,909 - OHPLBJKB_02994 0.76 +1.9
3,120,909 - OHPLBJKB_02994 0.76 -1.4
3,120,909 - OHPLBJKB_02994 0.76 -0.4
3,120,909 - OHPLBJKB_02994 0.76 -0.2
3,120,955 + OHPLBJKB_02994 0.89 -0.2
3,120,955 + OHPLBJKB_02994 0.89 +1.7
3,120,955 + OHPLBJKB_02994 0.89 -0.3
3,120,989 - -0.4
3,120,994 - -0.3
3,121,031 + OHPLBJKB_02995 0.11 -0.9
3,121,112 + OHPLBJKB_02995 0.31 +0.5
3,121,113 - OHPLBJKB_02995 0.31 +0.2
3,121,129 + OHPLBJKB_02995 0.35 -0.8
3,121,129 + OHPLBJKB_02995 0.35 -0.6
3,121,160 + OHPLBJKB_02995 0.43 -0.3
3,121,333 - OHPLBJKB_02995 0.85 -0.3
3,121,343 + OHPLBJKB_02995 0.88 +0.2
3,121,400 + +0.9
3,121,400 + +0.3
3,121,401 - -0.8
3,121,401 - +0.6
3,121,404 - +0.7
3,121,504 + +0.6
3,121,556 - -0.6
3,121,556 - -0.7
3,121,641 - -0.4
3,121,644 + -0.2
3,121,768 + -0.5
3,121,770 + -0.6
3,121,804 + OHPLBJKB_02996 0.30 +1.0
3,121,816 - OHPLBJKB_02996 0.41 +0.2
3,121,816 - OHPLBJKB_02996 0.41 -0.2
3,121,816 - OHPLBJKB_02996 0.41 +0.1
3,121,820 - OHPLBJKB_02996 0.44 -0.2
3,121,893 + +0.3
3,122,000 - -0.3
3,122,040 + -0.4
3,122,040 + -0.6
3,122,083 - -2.1
3,122,083 - -1.3
3,122,262 - OHPLBJKB_02997 0.14 +0.7
3,122,279 + OHPLBJKB_02997 0.15 +0.6
3,122,279 + OHPLBJKB_02997 0.15 -0.1
3,122,327 + OHPLBJKB_02997 0.19 +0.0
3,122,327 + OHPLBJKB_02997 0.19 -0.3
3,122,327 + OHPLBJKB_02997 0.19 +0.1
3,122,327 + OHPLBJKB_02997 0.19 -0.3
3,122,327 + OHPLBJKB_02997 0.19 +0.9
3,122,328 - OHPLBJKB_02997 0.19 -1.2
3,122,328 - OHPLBJKB_02997 0.19 +0.4
3,122,346 + OHPLBJKB_02997 0.20 +0.1
3,122,346 + OHPLBJKB_02997 0.20 -0.7
3,122,347 - OHPLBJKB_02997 0.20 -0.7
3,122,347 - OHPLBJKB_02997 0.20 +0.7
3,122,347 - OHPLBJKB_02997 0.20 +0.6
3,122,348 + OHPLBJKB_02997 0.20 -0.5
3,122,348 + OHPLBJKB_02997 0.20 +0.5
3,122,349 - OHPLBJKB_02997 0.21 -1.1
3,122,386 - OHPLBJKB_02997 0.23 +0.3

Or see this region's nucleotide sequence