Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02842 and OHPLBJKB_02843 are separated by 95 nucleotides OHPLBJKB_02843 and OHPLBJKB_02844 are separated by 3 nucleotides OHPLBJKB_02844 and OHPLBJKB_02845 are separated by 16 nucleotides OHPLBJKB_02845 and OHPLBJKB_02846 are separated by 142 nucleotides
OHPLBJKB_02842: OHPLBJKB_02842 - hypothetical protein, at 2,969,036 to 2,969,500
_02842
OHPLBJKB_02843: OHPLBJKB_02843 - hypothetical protein, at 2,969,596 to 2,970,246
_02843
OHPLBJKB_02844: OHPLBJKB_02844 - hypothetical protein, at 2,970,250 to 2,971,308
_02844
OHPLBJKB_02845: OHPLBJKB_02845 - hypothetical protein, at 2,971,325 to 2,972,158
_02845
OHPLBJKB_02846: OHPLBJKB_02846 - hypothetical protein, at 2,972,301 to 2,974,067
_02846
Position (kb)
2970
2971
2972 Strain fitness (log2 ratio)
-1
0
1
2 at 2969.286 kb on + strand, within OHPLBJKB_02842 at 2969.287 kb on - strand, within OHPLBJKB_02842 at 2969.319 kb on + strand, within OHPLBJKB_02842 at 2969.320 kb on - strand, within OHPLBJKB_02842 at 2969.320 kb on - strand, within OHPLBJKB_02842 at 2969.320 kb on - strand, within OHPLBJKB_02842 at 2969.672 kb on - strand, within OHPLBJKB_02843 at 2969.692 kb on - strand, within OHPLBJKB_02843 at 2969.958 kb on - strand, within OHPLBJKB_02843 at 2969.990 kb on + strand, within OHPLBJKB_02843 at 2969.990 kb on + strand, within OHPLBJKB_02843 at 2969.991 kb on - strand, within OHPLBJKB_02843 at 2969.991 kb on - strand, within OHPLBJKB_02843 at 2970.156 kb on - strand, within OHPLBJKB_02843 at 2970.338 kb on + strand at 2970.339 kb on - strand at 2970.339 kb on - strand at 2970.339 kb on - strand at 2970.339 kb on - strand at 2970.339 kb on - strand at 2970.425 kb on + strand, within OHPLBJKB_02844 at 2970.426 kb on - strand, within OHPLBJKB_02844 at 2970.695 kb on + strand, within OHPLBJKB_02844 at 2970.733 kb on - strand, within OHPLBJKB_02844 at 2970.972 kb on - strand, within OHPLBJKB_02844 at 2971.008 kb on + strand, within OHPLBJKB_02844 at 2971.009 kb on - strand, within OHPLBJKB_02844 at 2971.009 kb on - strand, within OHPLBJKB_02844 at 2971.010 kb on + strand, within OHPLBJKB_02844 at 2971.011 kb on - strand, within OHPLBJKB_02844 at 2971.275 kb on - strand at 2971.844 kb on - strand, within OHPLBJKB_02845 at 2972.008 kb on - strand, within OHPLBJKB_02845 at 2972.043 kb on + strand, within OHPLBJKB_02845 at 2972.044 kb on - strand, within OHPLBJKB_02845 at 2972.044 kb on - strand, within OHPLBJKB_02845 at 2972.058 kb on + strand, within OHPLBJKB_02845 at 2972.059 kb on - strand, within OHPLBJKB_02845 at 2972.185 kb on - strand at 2972.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 2,969,286 + OHPLBJKB_02842 0.54 -0.2 2,969,287 - OHPLBJKB_02842 0.54 +0.2 2,969,319 + OHPLBJKB_02842 0.61 +0.0 2,969,320 - OHPLBJKB_02842 0.61 +0.8 2,969,320 - OHPLBJKB_02842 0.61 +2.4 2,969,320 - OHPLBJKB_02842 0.61 +0.9 2,969,672 - OHPLBJKB_02843 0.12 -0.1 2,969,692 - OHPLBJKB_02843 0.15 -0.8 2,969,958 - OHPLBJKB_02843 0.56 +0.3 2,969,990 + OHPLBJKB_02843 0.61 -0.7 2,969,990 + OHPLBJKB_02843 0.61 +1.0 2,969,991 - OHPLBJKB_02843 0.61 +0.4 2,969,991 - OHPLBJKB_02843 0.61 +1.6 2,970,156 - OHPLBJKB_02843 0.86 -0.2 2,970,338 + -1.0 2,970,339 - -0.5 2,970,339 - -0.3 2,970,339 - +0.2 2,970,339 - +0.6 2,970,339 - +0.3 2,970,425 + OHPLBJKB_02844 0.17 +0.2 2,970,426 - OHPLBJKB_02844 0.17 -1.1 2,970,695 + OHPLBJKB_02844 0.42 -0.3 2,970,733 - OHPLBJKB_02844 0.46 -1.1 2,970,972 - OHPLBJKB_02844 0.68 +0.2 2,971,008 + OHPLBJKB_02844 0.72 -0.7 2,971,009 - OHPLBJKB_02844 0.72 -0.9 2,971,009 - OHPLBJKB_02844 0.72 +0.1 2,971,010 + OHPLBJKB_02844 0.72 +0.2 2,971,011 - OHPLBJKB_02844 0.72 -0.6 2,971,275 - +0.5 2,971,844 - OHPLBJKB_02845 0.62 -1.1 2,972,008 - OHPLBJKB_02845 0.82 -0.2 2,972,043 + OHPLBJKB_02845 0.86 +0.4 2,972,044 - OHPLBJKB_02845 0.86 +0.1 2,972,044 - OHPLBJKB_02845 0.86 +0.7 2,972,058 + OHPLBJKB_02845 0.88 -0.1 2,972,059 - OHPLBJKB_02845 0.88 +0.4 2,972,185 - -0.8 2,972,234 - +0.0
Or see this region's nucleotide sequence