Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02844

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02842 and OHPLBJKB_02843 are separated by 95 nucleotidesOHPLBJKB_02843 and OHPLBJKB_02844 are separated by 3 nucleotidesOHPLBJKB_02844 and OHPLBJKB_02845 are separated by 16 nucleotidesOHPLBJKB_02845 and OHPLBJKB_02846 are separated by 142 nucleotides OHPLBJKB_02842: OHPLBJKB_02842 - hypothetical protein, at 2,969,036 to 2,969,500 _02842 OHPLBJKB_02843: OHPLBJKB_02843 - hypothetical protein, at 2,969,596 to 2,970,246 _02843 OHPLBJKB_02844: OHPLBJKB_02844 - hypothetical protein, at 2,970,250 to 2,971,308 _02844 OHPLBJKB_02845: OHPLBJKB_02845 - hypothetical protein, at 2,971,325 to 2,972,158 _02845 OHPLBJKB_02846: OHPLBJKB_02846 - hypothetical protein, at 2,972,301 to 2,974,067 _02846 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -1 0 1 2at 2969.286 kb on + strand, within OHPLBJKB_02842at 2969.287 kb on - strand, within OHPLBJKB_02842at 2969.319 kb on + strand, within OHPLBJKB_02842at 2969.320 kb on - strand, within OHPLBJKB_02842at 2969.320 kb on - strand, within OHPLBJKB_02842at 2969.320 kb on - strand, within OHPLBJKB_02842at 2969.672 kb on - strand, within OHPLBJKB_02843at 2969.692 kb on - strand, within OHPLBJKB_02843at 2969.958 kb on - strand, within OHPLBJKB_02843at 2969.990 kb on + strand, within OHPLBJKB_02843at 2969.990 kb on + strand, within OHPLBJKB_02843at 2969.991 kb on - strand, within OHPLBJKB_02843at 2969.991 kb on - strand, within OHPLBJKB_02843at 2970.156 kb on - strand, within OHPLBJKB_02843at 2970.338 kb on + strandat 2970.339 kb on - strandat 2970.339 kb on - strandat 2970.339 kb on - strandat 2970.339 kb on - strandat 2970.339 kb on - strandat 2970.425 kb on + strand, within OHPLBJKB_02844at 2970.426 kb on - strand, within OHPLBJKB_02844at 2970.695 kb on + strand, within OHPLBJKB_02844at 2970.733 kb on - strand, within OHPLBJKB_02844at 2970.972 kb on - strand, within OHPLBJKB_02844at 2971.008 kb on + strand, within OHPLBJKB_02844at 2971.009 kb on - strand, within OHPLBJKB_02844at 2971.009 kb on - strand, within OHPLBJKB_02844at 2971.010 kb on + strand, within OHPLBJKB_02844at 2971.011 kb on - strand, within OHPLBJKB_02844at 2971.275 kb on - strandat 2971.844 kb on - strand, within OHPLBJKB_02845at 2972.008 kb on - strand, within OHPLBJKB_02845at 2972.043 kb on + strand, within OHPLBJKB_02845at 2972.044 kb on - strand, within OHPLBJKB_02845at 2972.044 kb on - strand, within OHPLBJKB_02845at 2972.058 kb on + strand, within OHPLBJKB_02845at 2972.059 kb on - strand, within OHPLBJKB_02845at 2972.185 kb on - strandat 2972.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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2,969,286 + OHPLBJKB_02842 0.54 -0.2
2,969,287 - OHPLBJKB_02842 0.54 +0.2
2,969,319 + OHPLBJKB_02842 0.61 +0.0
2,969,320 - OHPLBJKB_02842 0.61 +0.8
2,969,320 - OHPLBJKB_02842 0.61 +2.4
2,969,320 - OHPLBJKB_02842 0.61 +0.9
2,969,672 - OHPLBJKB_02843 0.12 -0.1
2,969,692 - OHPLBJKB_02843 0.15 -0.8
2,969,958 - OHPLBJKB_02843 0.56 +0.3
2,969,990 + OHPLBJKB_02843 0.61 -0.7
2,969,990 + OHPLBJKB_02843 0.61 +1.0
2,969,991 - OHPLBJKB_02843 0.61 +0.4
2,969,991 - OHPLBJKB_02843 0.61 +1.6
2,970,156 - OHPLBJKB_02843 0.86 -0.2
2,970,338 + -1.0
2,970,339 - -0.5
2,970,339 - -0.3
2,970,339 - +0.2
2,970,339 - +0.6
2,970,339 - +0.3
2,970,425 + OHPLBJKB_02844 0.17 +0.2
2,970,426 - OHPLBJKB_02844 0.17 -1.1
2,970,695 + OHPLBJKB_02844 0.42 -0.3
2,970,733 - OHPLBJKB_02844 0.46 -1.1
2,970,972 - OHPLBJKB_02844 0.68 +0.2
2,971,008 + OHPLBJKB_02844 0.72 -0.7
2,971,009 - OHPLBJKB_02844 0.72 -0.9
2,971,009 - OHPLBJKB_02844 0.72 +0.1
2,971,010 + OHPLBJKB_02844 0.72 +0.2
2,971,011 - OHPLBJKB_02844 0.72 -0.6
2,971,275 - +0.5
2,971,844 - OHPLBJKB_02845 0.62 -1.1
2,972,008 - OHPLBJKB_02845 0.82 -0.2
2,972,043 + OHPLBJKB_02845 0.86 +0.4
2,972,044 - OHPLBJKB_02845 0.86 +0.1
2,972,044 - OHPLBJKB_02845 0.86 +0.7
2,972,058 + OHPLBJKB_02845 0.88 -0.1
2,972,059 - OHPLBJKB_02845 0.88 +0.4
2,972,185 - -0.8
2,972,234 - +0.0

Or see this region's nucleotide sequence