Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02516

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02515 and OHPLBJKB_02516 are separated by 23 nucleotidesOHPLBJKB_02516 and OHPLBJKB_02517 are separated by 3 nucleotides OHPLBJKB_02515: OHPLBJKB_02515 - Septum site-determining protein MinC, at 2,628,115 to 2,628,810 _02515 OHPLBJKB_02516: OHPLBJKB_02516 - Septum site-determining protein MinD, at 2,628,834 to 2,629,646 _02516 OHPLBJKB_02517: OHPLBJKB_02517 - Cell division topological specificity factor, at 2,629,650 to 2,629,916 _02517 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2627.850 kb on - strandat 2627.904 kb on - strandat 2627.960 kb on + strandat 2627.978 kb on - strandat 2628.029 kb on + strandat 2628.031 kb on + strandat 2628.041 kb on + strandat 2628.043 kb on + strandat 2628.056 kb on - strandat 2628.090 kb on + strandat 2628.090 kb on + strandat 2628.093 kb on + strandat 2628.093 kb on + strandat 2628.097 kb on + strandat 2628.158 kb on + strandat 2628.189 kb on + strand, within OHPLBJKB_02515at 2628.260 kb on + strand, within OHPLBJKB_02515at 2628.290 kb on + strand, within OHPLBJKB_02515at 2628.347 kb on + strand, within OHPLBJKB_02515at 2628.468 kb on + strand, within OHPLBJKB_02515at 2628.497 kb on + strand, within OHPLBJKB_02515at 2628.497 kb on + strand, within OHPLBJKB_02515at 2628.833 kb on + strandat 2628.854 kb on + strandat 2628.878 kb on + strandat 2629.058 kb on + strand, within OHPLBJKB_02516at 2629.064 kb on + strand, within OHPLBJKB_02516at 2629.064 kb on + strand, within OHPLBJKB_02516at 2629.253 kb on + strand, within OHPLBJKB_02516at 2629.380 kb on + strand, within OHPLBJKB_02516at 2629.862 kb on + strand, within OHPLBJKB_02517at 2629.914 kb on + strandat 2629.938 kb on - strandat 2629.954 kb on + strandat 2629.954 kb on + strandat 2629.954 kb on + strandat 2630.021 kb on + strandat 2630.034 kb on + strandat 2630.034 kb on + strandat 2630.035 kb on - strandat 2630.035 kb on - strandat 2630.053 kb on - strandat 2630.059 kb on + strandat 2630.091 kb on + strandat 2630.092 kb on - strandat 2630.179 kb on + strandat 2630.200 kb on - strandat 2630.345 kb on - strandat 2630.350 kb on + strandat 2630.398 kb on + strandat 2630.399 kb on - strandat 2630.402 kb on - strandat 2630.402 kb on - strandat 2630.402 kb on - strandat 2630.402 kb on - strandat 2630.412 kb on + strandat 2630.412 kb on + strandat 2630.412 kb on + strandat 2630.413 kb on - strandat 2630.414 kb on + strandat 2630.459 kb on - strandat 2630.552 kb on + strandat 2630.579 kb on + strandat 2630.579 kb on + strandat 2630.579 kb on + strandat 2630.579 kb on + strandat 2630.579 kb on + strandat 2630.579 kb on + strandat 2630.580 kb on - strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.581 kb on + strandat 2630.582 kb on - strandat 2630.582 kb on - strandat 2630.582 kb on - strandat 2630.582 kb on - strandat 2630.582 kb on - strandat 2630.582 kb on - strandat 2630.582 kb on - strandat 2630.583 kb on + strandat 2630.583 kb on + strandat 2630.583 kb on + strandat 2630.583 kb on + strandat 2630.583 kb on + strandat 2630.583 kb on + strandat 2630.583 kb on + strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.584 kb on - strandat 2630.623 kb on + strandat 2630.623 kb on + strandat 2630.624 kb on - strandat 2630.631 kb on - strandat 2630.631 kb on - strandat 2630.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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2,627,850 - -0.9
2,627,904 - -0.2
2,627,960 + -1.4
2,627,978 - +0.2
2,628,029 + +0.0
2,628,031 + -0.1
2,628,041 + +0.5
2,628,043 + +0.2
2,628,056 - -0.1
2,628,090 + +0.1
2,628,090 + +0.5
2,628,093 + +0.4
2,628,093 + -0.0
2,628,097 + -0.5
2,628,158 + -2.0
2,628,189 + OHPLBJKB_02515 0.11 -0.7
2,628,260 + OHPLBJKB_02515 0.21 -0.0
2,628,290 + OHPLBJKB_02515 0.25 +0.1
2,628,347 + OHPLBJKB_02515 0.33 -1.1
2,628,468 + OHPLBJKB_02515 0.51 +0.9
2,628,497 + OHPLBJKB_02515 0.55 +0.0
2,628,497 + OHPLBJKB_02515 0.55 +2.3
2,628,833 + -0.6
2,628,854 + +1.0
2,628,878 + +1.0
2,629,058 + OHPLBJKB_02516 0.28 -2.6
2,629,064 + OHPLBJKB_02516 0.28 +0.2
2,629,064 + OHPLBJKB_02516 0.28 -0.5
2,629,253 + OHPLBJKB_02516 0.52 -0.3
2,629,380 + OHPLBJKB_02516 0.67 +0.2
2,629,862 + OHPLBJKB_02517 0.79 +0.6
2,629,914 + -0.2
2,629,938 - -0.6
2,629,954 + +0.0
2,629,954 + +0.7
2,629,954 + -1.2
2,630,021 + +1.1
2,630,034 + +0.2
2,630,034 + -1.2
2,630,035 - -0.5
2,630,035 - +0.8
2,630,053 - +1.2
2,630,059 + -0.2
2,630,091 + -2.6
2,630,092 - +0.2
2,630,179 + -3.0
2,630,200 - +0.4
2,630,345 - -0.7
2,630,350 + +0.4
2,630,398 + -0.7
2,630,399 - -0.7
2,630,402 - +0.8
2,630,402 - -0.6
2,630,402 - +0.3
2,630,402 - +0.0
2,630,412 + -0.6
2,630,412 + -1.0
2,630,412 + -0.1
2,630,413 - -0.1
2,630,414 + +0.0
2,630,459 - +0.5
2,630,552 + +0.4
2,630,579 + -0.4
2,630,579 + -0.9
2,630,579 + +1.4
2,630,579 + -0.5
2,630,579 + +0.4
2,630,579 + +0.3
2,630,580 - -0.4
2,630,581 + -0.6
2,630,581 + -0.8
2,630,581 + +0.6
2,630,581 + +0.3
2,630,581 + -0.9
2,630,581 + -0.3
2,630,581 + +0.6
2,630,581 + -0.4
2,630,581 + -0.3
2,630,582 - +0.3
2,630,582 - +1.0
2,630,582 - -0.3
2,630,582 - +0.1
2,630,582 - -0.9
2,630,582 - +1.3
2,630,582 - +0.4
2,630,583 + +1.8
2,630,583 + -0.6
2,630,583 + -0.2
2,630,583 + -1.1
2,630,583 + +1.0
2,630,583 + +1.2
2,630,583 + +0.4
2,630,584 - -0.2
2,630,584 - -0.2
2,630,584 - -0.1
2,630,584 - -0.7
2,630,584 - -0.4
2,630,584 - -1.2
2,630,584 - +0.1
2,630,584 - -0.5
2,630,623 + +0.3
2,630,623 + +0.0
2,630,624 - +0.1
2,630,631 - +0.7
2,630,631 - -0.0
2,630,634 - -0.1

Or see this region's nucleotide sequence