Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02092 and OHPLBJKB_02093 are separated by 127 nucleotides OHPLBJKB_02093 and OHPLBJKB_02094 overlap by 1 nucleotides OHPLBJKB_02094 and OHPLBJKB_02095 are separated by 3 nucleotides OHPLBJKB_02095 and OHPLBJKB_02096 are separated by 3 nucleotides
OHPLBJKB_02092: OHPLBJKB_02092 - hypothetical protein, at 2,168,205 to 2,168,405
_02092
OHPLBJKB_02093: OHPLBJKB_02093 - Endonuclease III, at 2,168,533 to 2,169,168
_02093
OHPLBJKB_02094: OHPLBJKB_02094 - Electron transport complex subunit RsxE, at 2,169,168 to 2,169,863
_02094
OHPLBJKB_02095: OHPLBJKB_02095 - Electron transport complex subunit RsxG, at 2,169,867 to 2,170,487
_02095
OHPLBJKB_02096: OHPLBJKB_02096 - Electron transport complex subunit RsxD, at 2,170,491 to 2,171,549
_02096
Position (kb)
2169
2170 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2168.231 kb on - strand, within OHPLBJKB_02092 at 2168.249 kb on + strand, within OHPLBJKB_02092 at 2168.268 kb on + strand, within OHPLBJKB_02092 at 2168.277 kb on - strand, within OHPLBJKB_02092 at 2168.298 kb on - strand, within OHPLBJKB_02092 at 2168.577 kb on + strand at 2168.577 kb on + strand at 2168.578 kb on - strand at 2168.578 kb on - strand at 2168.578 kb on - strand at 2168.613 kb on + strand, within OHPLBJKB_02093 at 2168.614 kb on - strand, within OHPLBJKB_02093 at 2168.614 kb on - strand, within OHPLBJKB_02093 at 2168.681 kb on - strand, within OHPLBJKB_02093 at 2168.693 kb on - strand, within OHPLBJKB_02093 at 2168.727 kb on + strand, within OHPLBJKB_02093 at 2168.766 kb on + strand, within OHPLBJKB_02093 at 2168.767 kb on - strand, within OHPLBJKB_02093 at 2168.792 kb on - strand, within OHPLBJKB_02093 at 2168.792 kb on - strand, within OHPLBJKB_02093 at 2168.868 kb on + strand, within OHPLBJKB_02093 at 2168.922 kb on + strand, within OHPLBJKB_02093 at 2168.944 kb on - strand, within OHPLBJKB_02093 at 2168.945 kb on + strand, within OHPLBJKB_02093 at 2168.945 kb on + strand, within OHPLBJKB_02093 at 2168.946 kb on - strand, within OHPLBJKB_02093 at 2169.097 kb on - strand, within OHPLBJKB_02093 at 2169.352 kb on - strand, within OHPLBJKB_02094 at 2169.366 kb on - strand, within OHPLBJKB_02094 at 2169.369 kb on + strand, within OHPLBJKB_02094 at 2169.536 kb on + strand, within OHPLBJKB_02094 at 2169.537 kb on - strand, within OHPLBJKB_02094 at 2169.755 kb on + strand, within OHPLBJKB_02094 at 2169.919 kb on + strand at 2170.253 kb on - strand, within OHPLBJKB_02095 at 2170.271 kb on + strand, within OHPLBJKB_02095 at 2170.272 kb on - strand, within OHPLBJKB_02095 at 2170.272 kb on - strand, within OHPLBJKB_02095 at 2170.276 kb on - strand, within OHPLBJKB_02095 at 2170.297 kb on + strand, within OHPLBJKB_02095 at 2170.297 kb on + strand, within OHPLBJKB_02095 at 2170.324 kb on + strand, within OHPLBJKB_02095 at 2170.325 kb on - strand, within OHPLBJKB_02095 at 2170.354 kb on - strand, within OHPLBJKB_02095 at 2170.354 kb on - strand, within OHPLBJKB_02095 at 2170.423 kb on - strand, within OHPLBJKB_02095 at 2170.457 kb on + strand at 2170.458 kb on - strand at 2170.458 kb on - strand at 2170.458 kb on - strand at 2170.458 kb on - strand at 2170.531 kb on + strand at 2170.531 kb on + strand at 2170.621 kb on - strand, within OHPLBJKB_02096 at 2170.624 kb on - strand, within OHPLBJKB_02096 at 2170.624 kb on - strand, within OHPLBJKB_02096 at 2170.667 kb on + strand, within OHPLBJKB_02096 at 2170.695 kb on - strand, within OHPLBJKB_02096 at 2170.804 kb on - strand, within OHPLBJKB_02096 at 2170.846 kb on - strand, within OHPLBJKB_02096
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 2,168,231 - OHPLBJKB_02092 0.13 +1.4 2,168,249 + OHPLBJKB_02092 0.22 +0.5 2,168,268 + OHPLBJKB_02092 0.31 -1.2 2,168,277 - OHPLBJKB_02092 0.36 -0.4 2,168,298 - OHPLBJKB_02092 0.46 +2.5 2,168,577 + -0.0 2,168,577 + -0.6 2,168,578 - -2.1 2,168,578 - -0.2 2,168,578 - +0.4 2,168,613 + OHPLBJKB_02093 0.13 +1.4 2,168,614 - OHPLBJKB_02093 0.13 -0.1 2,168,614 - OHPLBJKB_02093 0.13 -0.2 2,168,681 - OHPLBJKB_02093 0.23 -0.9 2,168,693 - OHPLBJKB_02093 0.25 -0.0 2,168,727 + OHPLBJKB_02093 0.31 -0.1 2,168,766 + OHPLBJKB_02093 0.37 +0.3 2,168,767 - OHPLBJKB_02093 0.37 -0.1 2,168,792 - OHPLBJKB_02093 0.41 -2.0 2,168,792 - OHPLBJKB_02093 0.41 +0.6 2,168,868 + OHPLBJKB_02093 0.53 -1.4 2,168,922 + OHPLBJKB_02093 0.61 -1.1 2,168,944 - OHPLBJKB_02093 0.65 +0.1 2,168,945 + OHPLBJKB_02093 0.65 +0.2 2,168,945 + OHPLBJKB_02093 0.65 +0.2 2,168,946 - OHPLBJKB_02093 0.65 -0.4 2,169,097 - OHPLBJKB_02093 0.89 +0.4 2,169,352 - OHPLBJKB_02094 0.26 +0.2 2,169,366 - OHPLBJKB_02094 0.28 -0.3 2,169,369 + OHPLBJKB_02094 0.29 -0.7 2,169,536 + OHPLBJKB_02094 0.53 -1.3 2,169,537 - OHPLBJKB_02094 0.53 -1.6 2,169,755 + OHPLBJKB_02094 0.84 +0.6 2,169,919 + +0.9 2,170,253 - OHPLBJKB_02095 0.62 -1.4 2,170,271 + OHPLBJKB_02095 0.65 -0.9 2,170,272 - OHPLBJKB_02095 0.65 +0.6 2,170,272 - OHPLBJKB_02095 0.65 +0.8 2,170,276 - OHPLBJKB_02095 0.66 -1.5 2,170,297 + OHPLBJKB_02095 0.69 -1.8 2,170,297 + OHPLBJKB_02095 0.69 +1.0 2,170,324 + OHPLBJKB_02095 0.74 -0.4 2,170,325 - OHPLBJKB_02095 0.74 -0.5 2,170,354 - OHPLBJKB_02095 0.78 -0.3 2,170,354 - OHPLBJKB_02095 0.78 -0.3 2,170,423 - OHPLBJKB_02095 0.90 -1.1 2,170,457 + +0.7 2,170,458 - -1.5 2,170,458 - -0.1 2,170,458 - -1.5 2,170,458 - -0.9 2,170,531 + +0.3 2,170,531 + -0.0 2,170,621 - OHPLBJKB_02096 0.12 -0.3 2,170,624 - OHPLBJKB_02096 0.13 -1.2 2,170,624 - OHPLBJKB_02096 0.13 +1.0 2,170,667 + OHPLBJKB_02096 0.17 +0.5 2,170,695 - OHPLBJKB_02096 0.19 +0.7 2,170,804 - OHPLBJKB_02096 0.30 -0.1 2,170,846 - OHPLBJKB_02096 0.34 -0.9
Or see this region's nucleotide sequence