Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02094

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02092 and OHPLBJKB_02093 are separated by 127 nucleotidesOHPLBJKB_02093 and OHPLBJKB_02094 overlap by 1 nucleotidesOHPLBJKB_02094 and OHPLBJKB_02095 are separated by 3 nucleotidesOHPLBJKB_02095 and OHPLBJKB_02096 are separated by 3 nucleotides OHPLBJKB_02092: OHPLBJKB_02092 - hypothetical protein, at 2,168,205 to 2,168,405 _02092 OHPLBJKB_02093: OHPLBJKB_02093 - Endonuclease III, at 2,168,533 to 2,169,168 _02093 OHPLBJKB_02094: OHPLBJKB_02094 - Electron transport complex subunit RsxE, at 2,169,168 to 2,169,863 _02094 OHPLBJKB_02095: OHPLBJKB_02095 - Electron transport complex subunit RsxG, at 2,169,867 to 2,170,487 _02095 OHPLBJKB_02096: OHPLBJKB_02096 - Electron transport complex subunit RsxD, at 2,170,491 to 2,171,549 _02096 Position (kb) 2169 2170Strain fitness (log2 ratio) -2 -1 0 1 2at 2168.231 kb on - strand, within OHPLBJKB_02092at 2168.249 kb on + strand, within OHPLBJKB_02092at 2168.268 kb on + strand, within OHPLBJKB_02092at 2168.277 kb on - strand, within OHPLBJKB_02092at 2168.298 kb on - strand, within OHPLBJKB_02092at 2168.577 kb on + strandat 2168.577 kb on + strandat 2168.578 kb on - strandat 2168.578 kb on - strandat 2168.578 kb on - strandat 2168.613 kb on + strand, within OHPLBJKB_02093at 2168.614 kb on - strand, within OHPLBJKB_02093at 2168.614 kb on - strand, within OHPLBJKB_02093at 2168.681 kb on - strand, within OHPLBJKB_02093at 2168.693 kb on - strand, within OHPLBJKB_02093at 2168.727 kb on + strand, within OHPLBJKB_02093at 2168.766 kb on + strand, within OHPLBJKB_02093at 2168.767 kb on - strand, within OHPLBJKB_02093at 2168.792 kb on - strand, within OHPLBJKB_02093at 2168.792 kb on - strand, within OHPLBJKB_02093at 2168.868 kb on + strand, within OHPLBJKB_02093at 2168.922 kb on + strand, within OHPLBJKB_02093at 2168.944 kb on - strand, within OHPLBJKB_02093at 2168.945 kb on + strand, within OHPLBJKB_02093at 2168.945 kb on + strand, within OHPLBJKB_02093at 2168.946 kb on - strand, within OHPLBJKB_02093at 2169.097 kb on - strand, within OHPLBJKB_02093at 2169.352 kb on - strand, within OHPLBJKB_02094at 2169.366 kb on - strand, within OHPLBJKB_02094at 2169.369 kb on + strand, within OHPLBJKB_02094at 2169.536 kb on + strand, within OHPLBJKB_02094at 2169.537 kb on - strand, within OHPLBJKB_02094at 2169.755 kb on + strand, within OHPLBJKB_02094at 2169.919 kb on + strandat 2170.253 kb on - strand, within OHPLBJKB_02095at 2170.271 kb on + strand, within OHPLBJKB_02095at 2170.272 kb on - strand, within OHPLBJKB_02095at 2170.272 kb on - strand, within OHPLBJKB_02095at 2170.276 kb on - strand, within OHPLBJKB_02095at 2170.297 kb on + strand, within OHPLBJKB_02095at 2170.297 kb on + strand, within OHPLBJKB_02095at 2170.324 kb on + strand, within OHPLBJKB_02095at 2170.325 kb on - strand, within OHPLBJKB_02095at 2170.354 kb on - strand, within OHPLBJKB_02095at 2170.354 kb on - strand, within OHPLBJKB_02095at 2170.423 kb on - strand, within OHPLBJKB_02095at 2170.457 kb on + strandat 2170.458 kb on - strandat 2170.458 kb on - strandat 2170.458 kb on - strandat 2170.458 kb on - strandat 2170.531 kb on + strandat 2170.531 kb on + strandat 2170.621 kb on - strand, within OHPLBJKB_02096at 2170.624 kb on - strand, within OHPLBJKB_02096at 2170.624 kb on - strand, within OHPLBJKB_02096at 2170.667 kb on + strand, within OHPLBJKB_02096at 2170.695 kb on - strand, within OHPLBJKB_02096at 2170.804 kb on - strand, within OHPLBJKB_02096at 2170.846 kb on - strand, within OHPLBJKB_02096

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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2,168,231 - OHPLBJKB_02092 0.13 +1.4
2,168,249 + OHPLBJKB_02092 0.22 +0.5
2,168,268 + OHPLBJKB_02092 0.31 -1.2
2,168,277 - OHPLBJKB_02092 0.36 -0.4
2,168,298 - OHPLBJKB_02092 0.46 +2.5
2,168,577 + -0.0
2,168,577 + -0.6
2,168,578 - -2.1
2,168,578 - -0.2
2,168,578 - +0.4
2,168,613 + OHPLBJKB_02093 0.13 +1.4
2,168,614 - OHPLBJKB_02093 0.13 -0.1
2,168,614 - OHPLBJKB_02093 0.13 -0.2
2,168,681 - OHPLBJKB_02093 0.23 -0.9
2,168,693 - OHPLBJKB_02093 0.25 -0.0
2,168,727 + OHPLBJKB_02093 0.31 -0.1
2,168,766 + OHPLBJKB_02093 0.37 +0.3
2,168,767 - OHPLBJKB_02093 0.37 -0.1
2,168,792 - OHPLBJKB_02093 0.41 -2.0
2,168,792 - OHPLBJKB_02093 0.41 +0.6
2,168,868 + OHPLBJKB_02093 0.53 -1.4
2,168,922 + OHPLBJKB_02093 0.61 -1.1
2,168,944 - OHPLBJKB_02093 0.65 +0.1
2,168,945 + OHPLBJKB_02093 0.65 +0.2
2,168,945 + OHPLBJKB_02093 0.65 +0.2
2,168,946 - OHPLBJKB_02093 0.65 -0.4
2,169,097 - OHPLBJKB_02093 0.89 +0.4
2,169,352 - OHPLBJKB_02094 0.26 +0.2
2,169,366 - OHPLBJKB_02094 0.28 -0.3
2,169,369 + OHPLBJKB_02094 0.29 -0.7
2,169,536 + OHPLBJKB_02094 0.53 -1.3
2,169,537 - OHPLBJKB_02094 0.53 -1.6
2,169,755 + OHPLBJKB_02094 0.84 +0.6
2,169,919 + +0.9
2,170,253 - OHPLBJKB_02095 0.62 -1.4
2,170,271 + OHPLBJKB_02095 0.65 -0.9
2,170,272 - OHPLBJKB_02095 0.65 +0.6
2,170,272 - OHPLBJKB_02095 0.65 +0.8
2,170,276 - OHPLBJKB_02095 0.66 -1.5
2,170,297 + OHPLBJKB_02095 0.69 -1.8
2,170,297 + OHPLBJKB_02095 0.69 +1.0
2,170,324 + OHPLBJKB_02095 0.74 -0.4
2,170,325 - OHPLBJKB_02095 0.74 -0.5
2,170,354 - OHPLBJKB_02095 0.78 -0.3
2,170,354 - OHPLBJKB_02095 0.78 -0.3
2,170,423 - OHPLBJKB_02095 0.90 -1.1
2,170,457 + +0.7
2,170,458 - -1.5
2,170,458 - -0.1
2,170,458 - -1.5
2,170,458 - -0.9
2,170,531 + +0.3
2,170,531 + -0.0
2,170,621 - OHPLBJKB_02096 0.12 -0.3
2,170,624 - OHPLBJKB_02096 0.13 -1.2
2,170,624 - OHPLBJKB_02096 0.13 +1.0
2,170,667 + OHPLBJKB_02096 0.17 +0.5
2,170,695 - OHPLBJKB_02096 0.19 +0.7
2,170,804 - OHPLBJKB_02096 0.30 -0.1
2,170,846 - OHPLBJKB_02096 0.34 -0.9

Or see this region's nucleotide sequence