Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01661

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01660 and OHPLBJKB_01661 are separated by 26 nucleotidesOHPLBJKB_01661 and OHPLBJKB_01662 are separated by 31 nucleotidesOHPLBJKB_01662 and OHPLBJKB_01663 are separated by 14 nucleotides OHPLBJKB_01660: OHPLBJKB_01660 - dTDP-glucose 4,6-dehydratase 2, at 1,748,988 to 1,750,052 _01660 OHPLBJKB_01661: OHPLBJKB_01661 - Glucose-1-phosphate thymidylyltransferase 2, at 1,750,079 to 1,750,948 _01661 OHPLBJKB_01662: OHPLBJKB_01662 - dTDP-4-dehydrorhamnose reductase, at 1,750,980 to 1,751,870 _01662 OHPLBJKB_01663: OHPLBJKB_01663 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,751,885 to 1,752,439 _01663 Position (kb) 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1749.093 kb on + strandat 1749.094 kb on - strandat 1749.327 kb on + strand, within OHPLBJKB_01660at 1749.396 kb on + strand, within OHPLBJKB_01660at 1749.516 kb on + strand, within OHPLBJKB_01660at 1749.555 kb on + strand, within OHPLBJKB_01660at 1749.555 kb on + strand, within OHPLBJKB_01660at 1749.555 kb on + strand, within OHPLBJKB_01660at 1749.556 kb on - strand, within OHPLBJKB_01660at 1749.556 kb on - strand, within OHPLBJKB_01660at 1749.556 kb on - strand, within OHPLBJKB_01660at 1749.565 kb on - strand, within OHPLBJKB_01660at 1749.596 kb on + strand, within OHPLBJKB_01660at 1749.693 kb on + strand, within OHPLBJKB_01660at 1749.693 kb on + strand, within OHPLBJKB_01660at 1749.734 kb on + strand, within OHPLBJKB_01660at 1749.976 kb on - strandat 1749.981 kb on - strandat 1750.021 kb on - strandat 1750.078 kb on + strandat 1750.088 kb on - strandat 1750.119 kb on + strandat 1750.119 kb on + strandat 1750.163 kb on + strandat 1750.164 kb on - strandat 1750.348 kb on + strand, within OHPLBJKB_01661at 1750.402 kb on + strand, within OHPLBJKB_01661at 1750.402 kb on + strand, within OHPLBJKB_01661at 1750.403 kb on - strand, within OHPLBJKB_01661at 1750.403 kb on - strand, within OHPLBJKB_01661at 1750.405 kb on + strand, within OHPLBJKB_01661at 1750.406 kb on - strand, within OHPLBJKB_01661at 1750.409 kb on + strand, within OHPLBJKB_01661at 1750.409 kb on + strand, within OHPLBJKB_01661at 1750.409 kb on + strand, within OHPLBJKB_01661at 1750.534 kb on + strand, within OHPLBJKB_01661at 1750.598 kb on + strand, within OHPLBJKB_01661at 1750.688 kb on + strand, within OHPLBJKB_01661at 1750.688 kb on + strand, within OHPLBJKB_01661at 1750.688 kb on + strand, within OHPLBJKB_01661at 1750.688 kb on + strand, within OHPLBJKB_01661at 1750.689 kb on - strand, within OHPLBJKB_01661at 1750.689 kb on - strand, within OHPLBJKB_01661at 1750.689 kb on - strand, within OHPLBJKB_01661at 1750.920 kb on - strandat 1750.920 kb on - strandat 1751.070 kb on + strand, within OHPLBJKB_01662at 1751.070 kb on + strand, within OHPLBJKB_01662at 1751.071 kb on - strand, within OHPLBJKB_01662at 1751.295 kb on + strand, within OHPLBJKB_01662at 1751.296 kb on - strand, within OHPLBJKB_01662at 1751.296 kb on - strand, within OHPLBJKB_01662at 1751.442 kb on + strand, within OHPLBJKB_01662at 1751.442 kb on + strand, within OHPLBJKB_01662at 1751.442 kb on + strand, within OHPLBJKB_01662at 1751.442 kb on + strand, within OHPLBJKB_01662at 1751.442 kb on + strand, within OHPLBJKB_01662at 1751.442 kb on + strand, within OHPLBJKB_01662at 1751.443 kb on - strand, within OHPLBJKB_01662at 1751.443 kb on - strand, within OHPLBJKB_01662at 1751.443 kb on - strand, within OHPLBJKB_01662at 1751.443 kb on - strand, within OHPLBJKB_01662at 1751.443 kb on - strand, within OHPLBJKB_01662at 1751.594 kb on + strand, within OHPLBJKB_01662at 1751.616 kb on + strand, within OHPLBJKB_01662at 1751.616 kb on + strand, within OHPLBJKB_01662at 1751.617 kb on - strand, within OHPLBJKB_01662at 1751.664 kb on + strand, within OHPLBJKB_01662at 1751.868 kb on + strandat 1751.893 kb on + strandat 1751.894 kb on - strandat 1751.896 kb on + strandat 1751.896 kb on + strandat 1751.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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1,749,093 + -0.3
1,749,094 - -0.8
1,749,327 + OHPLBJKB_01660 0.32 +0.9
1,749,396 + OHPLBJKB_01660 0.38 -0.3
1,749,516 + OHPLBJKB_01660 0.50 -1.8
1,749,555 + OHPLBJKB_01660 0.53 -1.0
1,749,555 + OHPLBJKB_01660 0.53 +0.4
1,749,555 + OHPLBJKB_01660 0.53 +0.8
1,749,556 - OHPLBJKB_01660 0.53 -2.2
1,749,556 - OHPLBJKB_01660 0.53 -0.8
1,749,556 - OHPLBJKB_01660 0.53 -0.5
1,749,565 - OHPLBJKB_01660 0.54 -2.2
1,749,596 + OHPLBJKB_01660 0.57 -0.0
1,749,693 + OHPLBJKB_01660 0.66 -0.9
1,749,693 + OHPLBJKB_01660 0.66 +0.7
1,749,734 + OHPLBJKB_01660 0.70 -0.1
1,749,976 - -1.8
1,749,981 - -1.2
1,750,021 - -0.0
1,750,078 + -1.8
1,750,088 - -0.5
1,750,119 + -0.2
1,750,119 + -2.7
1,750,163 + -0.2
1,750,164 - +0.1
1,750,348 + OHPLBJKB_01661 0.31 -1.0
1,750,402 + OHPLBJKB_01661 0.37 +0.8
1,750,402 + OHPLBJKB_01661 0.37 -0.4
1,750,403 - OHPLBJKB_01661 0.37 -1.8
1,750,403 - OHPLBJKB_01661 0.37 -1.4
1,750,405 + OHPLBJKB_01661 0.37 -0.8
1,750,406 - OHPLBJKB_01661 0.38 -0.1
1,750,409 + OHPLBJKB_01661 0.38 -0.0
1,750,409 + OHPLBJKB_01661 0.38 -0.3
1,750,409 + OHPLBJKB_01661 0.38 +0.1
1,750,534 + OHPLBJKB_01661 0.52 +0.6
1,750,598 + OHPLBJKB_01661 0.60 +0.0
1,750,688 + OHPLBJKB_01661 0.70 -0.1
1,750,688 + OHPLBJKB_01661 0.70 -0.8
1,750,688 + OHPLBJKB_01661 0.70 -1.5
1,750,688 + OHPLBJKB_01661 0.70 -1.5
1,750,689 - OHPLBJKB_01661 0.70 +1.2
1,750,689 - OHPLBJKB_01661 0.70 -0.8
1,750,689 - OHPLBJKB_01661 0.70 +0.2
1,750,920 - -0.8
1,750,920 - +0.4
1,751,070 + OHPLBJKB_01662 0.10 -0.5
1,751,070 + OHPLBJKB_01662 0.10 -1.5
1,751,071 - OHPLBJKB_01662 0.10 -1.8
1,751,295 + OHPLBJKB_01662 0.35 +1.6
1,751,296 - OHPLBJKB_01662 0.35 -0.5
1,751,296 - OHPLBJKB_01662 0.35 -1.9
1,751,442 + OHPLBJKB_01662 0.52 -0.5
1,751,442 + OHPLBJKB_01662 0.52 -1.5
1,751,442 + OHPLBJKB_01662 0.52 -1.7
1,751,442 + OHPLBJKB_01662 0.52 -1.8
1,751,442 + OHPLBJKB_01662 0.52 -1.4
1,751,442 + OHPLBJKB_01662 0.52 -1.5
1,751,443 - OHPLBJKB_01662 0.52 -2.0
1,751,443 - OHPLBJKB_01662 0.52 -1.8
1,751,443 - OHPLBJKB_01662 0.52 -1.9
1,751,443 - OHPLBJKB_01662 0.52 -1.9
1,751,443 - OHPLBJKB_01662 0.52 -1.0
1,751,594 + OHPLBJKB_01662 0.69 +3.3
1,751,616 + OHPLBJKB_01662 0.71 -1.2
1,751,616 + OHPLBJKB_01662 0.71 -0.2
1,751,617 - OHPLBJKB_01662 0.71 -2.5
1,751,664 + OHPLBJKB_01662 0.77 -0.8
1,751,868 + -0.1
1,751,893 + -2.6
1,751,894 - -2.0
1,751,896 + -2.5
1,751,896 + -1.2
1,751,906 - -0.5

Or see this region's nucleotide sequence