Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01260

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01259 and OHPLBJKB_01260 are separated by 3 nucleotidesOHPLBJKB_01260 and OHPLBJKB_01261 are separated by 538 nucleotides OHPLBJKB_01259: OHPLBJKB_01259 - Succinyl-diaminopimelate desuccinylase, at 1,295,985 to 1,297,112 _01259 OHPLBJKB_01260: OHPLBJKB_01260 - Protein YffB, at 1,297,116 to 1,297,472 _01260 OHPLBJKB_01261: OHPLBJKB_01261 - Multidrug efflux pump subunit AcrB, at 1,298,011 to 1,301,124 _01261 Position (kb) 1297 1298Strain fitness (log2 ratio) -2 -1 0 1at 1297.113 kb on - strandat 1297.169 kb on + strand, within OHPLBJKB_01260at 1297.170 kb on - strand, within OHPLBJKB_01260at 1297.296 kb on - strand, within OHPLBJKB_01260at 1297.327 kb on - strand, within OHPLBJKB_01260at 1297.351 kb on - strand, within OHPLBJKB_01260at 1297.351 kb on - strand, within OHPLBJKB_01260at 1297.393 kb on + strand, within OHPLBJKB_01260at 1297.434 kb on - strand, within OHPLBJKB_01260at 1297.500 kb on + strandat 1297.585 kb on + strandat 1297.589 kb on - strandat 1297.620 kb on + strandat 1297.671 kb on + strandat 1297.675 kb on - strandat 1297.689 kb on + strandat 1297.709 kb on + strandat 1297.716 kb on + strandat 1297.716 kb on + strandat 1297.716 kb on + strandat 1297.717 kb on - strandat 1297.739 kb on + strandat 1297.739 kb on + strandat 1297.740 kb on - strandat 1297.740 kb on - strandat 1297.740 kb on - strandat 1297.743 kb on - strandat 1297.743 kb on - strandat 1297.746 kb on + strandat 1297.746 kb on + strandat 1297.746 kb on + strandat 1297.747 kb on - strandat 1297.747 kb on - strandat 1297.747 kb on - strandat 1297.747 kb on - strandat 1297.750 kb on + strandat 1297.771 kb on - strandat 1297.790 kb on + strandat 1297.791 kb on - strandat 1297.795 kb on + strandat 1297.810 kb on - strandat 1297.811 kb on + strandat 1297.811 kb on + strandat 1297.812 kb on - strandat 1297.812 kb on - strandat 1297.822 kb on + strandat 1297.833 kb on + strandat 1297.834 kb on - strandat 1297.834 kb on - strandat 1297.834 kb on - strandat 1297.837 kb on + strandat 1297.837 kb on + strandat 1297.837 kb on + strandat 1297.837 kb on + strandat 1297.838 kb on - strandat 1297.840 kb on - strandat 1297.852 kb on + strandat 1297.907 kb on - strandat 1297.911 kb on - strandat 1297.911 kb on - strandat 1297.927 kb on + strandat 1297.927 kb on + strandat 1297.927 kb on + strandat 1298.012 kb on + strandat 1298.075 kb on + strandat 1298.075 kb on + strandat 1298.076 kb on - strandat 1298.076 kb on - strandat 1298.088 kb on + strandat 1298.089 kb on - strandat 1298.188 kb on - strandat 1298.188 kb on - strandat 1298.354 kb on + strand, within OHPLBJKB_01261at 1298.354 kb on + strand, within OHPLBJKB_01261at 1298.355 kb on - strand, within OHPLBJKB_01261at 1298.355 kb on - strand, within OHPLBJKB_01261at 1298.456 kb on + strand, within OHPLBJKB_01261at 1298.456 kb on + strand, within OHPLBJKB_01261at 1298.456 kb on + strand, within OHPLBJKB_01261at 1298.456 kb on + strand, within OHPLBJKB_01261at 1298.456 kb on + strand, within OHPLBJKB_01261at 1298.457 kb on - strand, within OHPLBJKB_01261at 1298.457 kb on - strand, within OHPLBJKB_01261

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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1,297,113 - +1.3
1,297,169 + OHPLBJKB_01260 0.15 -0.4
1,297,170 - OHPLBJKB_01260 0.15 -0.3
1,297,296 - OHPLBJKB_01260 0.50 +0.0
1,297,327 - OHPLBJKB_01260 0.59 -0.2
1,297,351 - OHPLBJKB_01260 0.66 -0.5
1,297,351 - OHPLBJKB_01260 0.66 -0.2
1,297,393 + OHPLBJKB_01260 0.78 -0.8
1,297,434 - OHPLBJKB_01260 0.89 -0.3
1,297,500 + -0.5
1,297,585 + -0.1
1,297,589 - +0.8
1,297,620 + +0.1
1,297,671 + -0.8
1,297,675 - +1.2
1,297,689 + -2.0
1,297,709 + +0.2
1,297,716 + -0.1
1,297,716 + +0.2
1,297,716 + +0.9
1,297,717 - -0.1
1,297,739 + +0.1
1,297,739 + -1.8
1,297,740 - -0.1
1,297,740 - -0.6
1,297,740 - -1.2
1,297,743 - +0.1
1,297,743 - -0.8
1,297,746 + +1.2
1,297,746 + -0.3
1,297,746 + +0.6
1,297,747 - +0.3
1,297,747 - +0.9
1,297,747 - +0.7
1,297,747 - -1.7
1,297,750 + +0.5
1,297,771 - +1.2
1,297,790 + -0.8
1,297,791 - +0.2
1,297,795 + +0.7
1,297,810 - -0.1
1,297,811 + +0.2
1,297,811 + +0.0
1,297,812 - +0.6
1,297,812 - -0.5
1,297,822 + +0.5
1,297,833 + -0.4
1,297,834 - +0.2
1,297,834 - -2.4
1,297,834 - -0.8
1,297,837 + +1.0
1,297,837 + -0.8
1,297,837 + -0.6
1,297,837 + -1.0
1,297,838 - -0.3
1,297,840 - +0.0
1,297,852 + +0.2
1,297,907 - +0.2
1,297,911 - +0.6
1,297,911 - +0.8
1,297,927 + -1.5
1,297,927 + -1.1
1,297,927 + +0.0
1,298,012 + +0.5
1,298,075 + +0.3
1,298,075 + -0.3
1,298,076 - +0.7
1,298,076 - +0.4
1,298,088 + +0.5
1,298,089 - +0.6
1,298,188 - +0.1
1,298,188 - -0.2
1,298,354 + OHPLBJKB_01261 0.11 +0.0
1,298,354 + OHPLBJKB_01261 0.11 +0.6
1,298,355 - OHPLBJKB_01261 0.11 -0.1
1,298,355 - OHPLBJKB_01261 0.11 +0.3
1,298,456 + OHPLBJKB_01261 0.14 -0.8
1,298,456 + OHPLBJKB_01261 0.14 -0.1
1,298,456 + OHPLBJKB_01261 0.14 -0.0
1,298,456 + OHPLBJKB_01261 0.14 +0.1
1,298,456 + OHPLBJKB_01261 0.14 +0.5
1,298,457 - OHPLBJKB_01261 0.14 +0.2
1,298,457 - OHPLBJKB_01261 0.14 +0.4

Or see this region's nucleotide sequence