Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01259 and OHPLBJKB_01260 are separated by 3 nucleotides OHPLBJKB_01260 and OHPLBJKB_01261 are separated by 538 nucleotides
OHPLBJKB_01259: OHPLBJKB_01259 - Succinyl-diaminopimelate desuccinylase, at 1,295,985 to 1,297,112
_01259
OHPLBJKB_01260: OHPLBJKB_01260 - Protein YffB, at 1,297,116 to 1,297,472
_01260
OHPLBJKB_01261: OHPLBJKB_01261 - Multidrug efflux pump subunit AcrB, at 1,298,011 to 1,301,124
_01261
Position (kb)
1297
1298 Strain fitness (log2 ratio)
-2
-1
0
1 at 1297.113 kb on - strand at 1297.169 kb on + strand, within OHPLBJKB_01260 at 1297.170 kb on - strand, within OHPLBJKB_01260 at 1297.296 kb on - strand, within OHPLBJKB_01260 at 1297.327 kb on - strand, within OHPLBJKB_01260 at 1297.351 kb on - strand, within OHPLBJKB_01260 at 1297.351 kb on - strand, within OHPLBJKB_01260 at 1297.393 kb on + strand, within OHPLBJKB_01260 at 1297.434 kb on - strand, within OHPLBJKB_01260 at 1297.500 kb on + strand at 1297.585 kb on + strand at 1297.589 kb on - strand at 1297.620 kb on + strand at 1297.671 kb on + strand at 1297.675 kb on - strand at 1297.689 kb on + strand at 1297.709 kb on + strand at 1297.716 kb on + strand at 1297.716 kb on + strand at 1297.716 kb on + strand at 1297.717 kb on - strand at 1297.739 kb on + strand at 1297.739 kb on + strand at 1297.740 kb on - strand at 1297.740 kb on - strand at 1297.740 kb on - strand at 1297.743 kb on - strand at 1297.743 kb on - strand at 1297.746 kb on + strand at 1297.746 kb on + strand at 1297.746 kb on + strand at 1297.747 kb on - strand at 1297.747 kb on - strand at 1297.747 kb on - strand at 1297.747 kb on - strand at 1297.750 kb on + strand at 1297.771 kb on - strand at 1297.790 kb on + strand at 1297.791 kb on - strand at 1297.795 kb on + strand at 1297.810 kb on - strand at 1297.811 kb on + strand at 1297.811 kb on + strand at 1297.812 kb on - strand at 1297.812 kb on - strand at 1297.822 kb on + strand at 1297.833 kb on + strand at 1297.834 kb on - strand at 1297.834 kb on - strand at 1297.834 kb on - strand at 1297.837 kb on + strand at 1297.837 kb on + strand at 1297.837 kb on + strand at 1297.837 kb on + strand at 1297.838 kb on - strand at 1297.840 kb on - strand at 1297.852 kb on + strand at 1297.907 kb on - strand at 1297.911 kb on - strand at 1297.911 kb on - strand at 1297.927 kb on + strand at 1297.927 kb on + strand at 1297.927 kb on + strand at 1298.012 kb on + strand at 1298.075 kb on + strand at 1298.075 kb on + strand at 1298.076 kb on - strand at 1298.076 kb on - strand at 1298.088 kb on + strand at 1298.089 kb on - strand at 1298.188 kb on - strand at 1298.188 kb on - strand at 1298.354 kb on + strand, within OHPLBJKB_01261 at 1298.354 kb on + strand, within OHPLBJKB_01261 at 1298.355 kb on - strand, within OHPLBJKB_01261 at 1298.355 kb on - strand, within OHPLBJKB_01261 at 1298.456 kb on + strand, within OHPLBJKB_01261 at 1298.456 kb on + strand, within OHPLBJKB_01261 at 1298.456 kb on + strand, within OHPLBJKB_01261 at 1298.456 kb on + strand, within OHPLBJKB_01261 at 1298.456 kb on + strand, within OHPLBJKB_01261 at 1298.457 kb on - strand, within OHPLBJKB_01261 at 1298.457 kb on - strand, within OHPLBJKB_01261
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 1,297,113 - +1.3 1,297,169 + OHPLBJKB_01260 0.15 -0.4 1,297,170 - OHPLBJKB_01260 0.15 -0.3 1,297,296 - OHPLBJKB_01260 0.50 +0.0 1,297,327 - OHPLBJKB_01260 0.59 -0.2 1,297,351 - OHPLBJKB_01260 0.66 -0.5 1,297,351 - OHPLBJKB_01260 0.66 -0.2 1,297,393 + OHPLBJKB_01260 0.78 -0.8 1,297,434 - OHPLBJKB_01260 0.89 -0.3 1,297,500 + -0.5 1,297,585 + -0.1 1,297,589 - +0.8 1,297,620 + +0.1 1,297,671 + -0.8 1,297,675 - +1.2 1,297,689 + -2.0 1,297,709 + +0.2 1,297,716 + -0.1 1,297,716 + +0.2 1,297,716 + +0.9 1,297,717 - -0.1 1,297,739 + +0.1 1,297,739 + -1.8 1,297,740 - -0.1 1,297,740 - -0.6 1,297,740 - -1.2 1,297,743 - +0.1 1,297,743 - -0.8 1,297,746 + +1.2 1,297,746 + -0.3 1,297,746 + +0.6 1,297,747 - +0.3 1,297,747 - +0.9 1,297,747 - +0.7 1,297,747 - -1.7 1,297,750 + +0.5 1,297,771 - +1.2 1,297,790 + -0.8 1,297,791 - +0.2 1,297,795 + +0.7 1,297,810 - -0.1 1,297,811 + +0.2 1,297,811 + +0.0 1,297,812 - +0.6 1,297,812 - -0.5 1,297,822 + +0.5 1,297,833 + -0.4 1,297,834 - +0.2 1,297,834 - -2.4 1,297,834 - -0.8 1,297,837 + +1.0 1,297,837 + -0.8 1,297,837 + -0.6 1,297,837 + -1.0 1,297,838 - -0.3 1,297,840 - +0.0 1,297,852 + +0.2 1,297,907 - +0.2 1,297,911 - +0.6 1,297,911 - +0.8 1,297,927 + -1.5 1,297,927 + -1.1 1,297,927 + +0.0 1,298,012 + +0.5 1,298,075 + +0.3 1,298,075 + -0.3 1,298,076 - +0.7 1,298,076 - +0.4 1,298,088 + +0.5 1,298,089 - +0.6 1,298,188 - +0.1 1,298,188 - -0.2 1,298,354 + OHPLBJKB_01261 0.11 +0.0 1,298,354 + OHPLBJKB_01261 0.11 +0.6 1,298,355 - OHPLBJKB_01261 0.11 -0.1 1,298,355 - OHPLBJKB_01261 0.11 +0.3 1,298,456 + OHPLBJKB_01261 0.14 -0.8 1,298,456 + OHPLBJKB_01261 0.14 -0.1 1,298,456 + OHPLBJKB_01261 0.14 -0.0 1,298,456 + OHPLBJKB_01261 0.14 +0.1 1,298,456 + OHPLBJKB_01261 0.14 +0.5 1,298,457 - OHPLBJKB_01261 0.14 +0.2 1,298,457 - OHPLBJKB_01261 0.14 +0.4
Or see this region's nucleotide sequence