Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00956

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00954 and OHPLBJKB_00955 are separated by 33 nucleotidesOHPLBJKB_00955 and OHPLBJKB_00956 are separated by 13 nucleotidesOHPLBJKB_00956 and OHPLBJKB_00957 are separated by 138 nucleotides OHPLBJKB_00954: OHPLBJKB_00954 - IS1 family transposase IS1A, at 986,721 to 986,996 _00954 OHPLBJKB_00955: OHPLBJKB_00955 - hypothetical protein, at 987,030 to 987,758 _00955 OHPLBJKB_00956: OHPLBJKB_00956 - putative protein YqcG, at 987,772 to 987,912 _00956 OHPLBJKB_00957: OHPLBJKB_00957 - 7-carboxy-7-deazaguanine synthase, at 988,051 to 988,722 _00957 Position (kb) 987 988Strain fitness (log2 ratio) -2 -1 0 1 2at 987.021 kb on + strandat 987.021 kb on + strandat 987.021 kb on + strandat 987.021 kb on + strandat 987.132 kb on - strand, within OHPLBJKB_00955at 987.146 kb on + strand, within OHPLBJKB_00955at 987.229 kb on + strand, within OHPLBJKB_00955at 987.232 kb on + strand, within OHPLBJKB_00955at 987.320 kb on + strand, within OHPLBJKB_00955at 987.321 kb on - strand, within OHPLBJKB_00955at 987.321 kb on - strand, within OHPLBJKB_00955at 987.324 kb on + strand, within OHPLBJKB_00955at 987.324 kb on + strand, within OHPLBJKB_00955at 987.325 kb on - strand, within OHPLBJKB_00955at 987.343 kb on - strand, within OHPLBJKB_00955at 987.357 kb on - strand, within OHPLBJKB_00955at 987.377 kb on + strand, within OHPLBJKB_00955at 987.387 kb on - strand, within OHPLBJKB_00955at 987.408 kb on + strand, within OHPLBJKB_00955at 987.432 kb on + strand, within OHPLBJKB_00955at 987.432 kb on + strand, within OHPLBJKB_00955at 987.489 kb on - strand, within OHPLBJKB_00955at 987.535 kb on + strand, within OHPLBJKB_00955at 987.535 kb on + strand, within OHPLBJKB_00955at 987.573 kb on + strand, within OHPLBJKB_00955at 987.597 kb on - strand, within OHPLBJKB_00955at 987.662 kb on + strand, within OHPLBJKB_00955at 987.685 kb on - strand, within OHPLBJKB_00955at 987.698 kb on + strandat 987.699 kb on - strandat 987.699 kb on - strandat 987.883 kb on - strand, within OHPLBJKB_00956at 987.915 kb on + strandat 987.942 kb on + strandat 988.022 kb on + strandat 988.030 kb on - strandat 988.099 kb on + strandat 988.100 kb on - strandat 988.100 kb on - strandat 988.100 kb on - strandat 988.100 kb on - strandat 988.105 kb on - strandat 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.245 kb on + strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.246 kb on - strand, within OHPLBJKB_00957at 988.300 kb on + strand, within OHPLBJKB_00957at 988.300 kb on + strand, within OHPLBJKB_00957at 988.301 kb on - strand, within OHPLBJKB_00957at 988.301 kb on - strand, within OHPLBJKB_00957at 988.389 kb on + strand, within OHPLBJKB_00957at 988.389 kb on + strand, within OHPLBJKB_00957at 988.390 kb on - strand, within OHPLBJKB_00957at 988.425 kb on - strand, within OHPLBJKB_00957at 988.440 kb on + strand, within OHPLBJKB_00957at 988.544 kb on + strand, within OHPLBJKB_00957at 988.552 kb on - strand, within OHPLBJKB_00957at 988.572 kb on - strand, within OHPLBJKB_00957at 988.572 kb on - strand, within OHPLBJKB_00957at 988.593 kb on + strand, within OHPLBJKB_00957at 988.594 kb on - strand, within OHPLBJKB_00957at 988.674 kb on + strandat 988.701 kb on + strandat 988.701 kb on + strandat 988.702 kb on - strandat 988.705 kb on + strandat 988.706 kb on - strandat 988.732 kb on + strandat 988.732 kb on + strandat 988.735 kb on - strandat 988.741 kb on + strandat 988.742 kb on - strandat 988.743 kb on + strandat 988.744 kb on - strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.778 kb on + strandat 988.780 kb on + strandat 988.781 kb on - strandat 988.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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987,021 + -0.2
987,021 + +0.4
987,021 + -0.0
987,021 + -0.7
987,132 - OHPLBJKB_00955 0.14 -0.6
987,146 + OHPLBJKB_00955 0.16 -1.7
987,229 + OHPLBJKB_00955 0.27 +0.1
987,232 + OHPLBJKB_00955 0.28 +0.1
987,320 + OHPLBJKB_00955 0.40 +0.5
987,321 - OHPLBJKB_00955 0.40 -0.3
987,321 - OHPLBJKB_00955 0.40 +0.2
987,324 + OHPLBJKB_00955 0.40 +0.3
987,324 + OHPLBJKB_00955 0.40 +0.1
987,325 - OHPLBJKB_00955 0.40 +1.7
987,343 - OHPLBJKB_00955 0.43 +0.9
987,357 - OHPLBJKB_00955 0.45 -0.2
987,377 + OHPLBJKB_00955 0.48 -2.4
987,387 - OHPLBJKB_00955 0.49 -1.2
987,408 + OHPLBJKB_00955 0.52 -0.2
987,432 + OHPLBJKB_00955 0.55 +0.4
987,432 + OHPLBJKB_00955 0.55 +0.2
987,489 - OHPLBJKB_00955 0.63 +0.4
987,535 + OHPLBJKB_00955 0.69 -1.7
987,535 + OHPLBJKB_00955 0.69 +0.5
987,573 + OHPLBJKB_00955 0.74 +0.5
987,597 - OHPLBJKB_00955 0.78 +1.2
987,662 + OHPLBJKB_00955 0.87 +0.7
987,685 - OHPLBJKB_00955 0.90 -1.5
987,698 + -0.7
987,699 - -0.4
987,699 - +0.1
987,883 - OHPLBJKB_00956 0.79 -0.8
987,915 + -0.4
987,942 + -1.1
988,022 + -0.7
988,030 - -1.5
988,099 + +0.0
988,100 - +0.4
988,100 - -0.1
988,100 - -0.2
988,100 - -0.2
988,105 - -0.0
988,245 + OHPLBJKB_00957 0.29 +0.7
988,245 + OHPLBJKB_00957 0.29 +0.1
988,245 + OHPLBJKB_00957 0.29 -0.1
988,245 + OHPLBJKB_00957 0.29 +0.1
988,245 + OHPLBJKB_00957 0.29 -0.8
988,245 + OHPLBJKB_00957 0.29 +0.3
988,245 + OHPLBJKB_00957 0.29 -0.2
988,245 + OHPLBJKB_00957 0.29 +0.1
988,245 + OHPLBJKB_00957 0.29 -0.6
988,246 - OHPLBJKB_00957 0.29 +0.2
988,246 - OHPLBJKB_00957 0.29 -1.0
988,246 - OHPLBJKB_00957 0.29 -1.4
988,246 - OHPLBJKB_00957 0.29 -1.1
988,246 - OHPLBJKB_00957 0.29 +0.2
988,246 - OHPLBJKB_00957 0.29 -0.8
988,246 - OHPLBJKB_00957 0.29 +0.1
988,246 - OHPLBJKB_00957 0.29 +0.9
988,246 - OHPLBJKB_00957 0.29 -0.6
988,246 - OHPLBJKB_00957 0.29 -0.5
988,246 - OHPLBJKB_00957 0.29 -1.4
988,246 - OHPLBJKB_00957 0.29 +0.6
988,300 + OHPLBJKB_00957 0.37 -1.0
988,300 + OHPLBJKB_00957 0.37 +0.9
988,301 - OHPLBJKB_00957 0.37 -1.2
988,301 - OHPLBJKB_00957 0.37 -0.1
988,389 + OHPLBJKB_00957 0.50 -0.3
988,389 + OHPLBJKB_00957 0.50 +0.6
988,390 - OHPLBJKB_00957 0.50 -0.1
988,425 - OHPLBJKB_00957 0.56 +2.0
988,440 + OHPLBJKB_00957 0.58 +0.4
988,544 + OHPLBJKB_00957 0.73 -0.0
988,552 - OHPLBJKB_00957 0.75 +0.0
988,572 - OHPLBJKB_00957 0.78 -0.0
988,572 - OHPLBJKB_00957 0.78 -0.0
988,593 + OHPLBJKB_00957 0.81 -0.1
988,594 - OHPLBJKB_00957 0.81 +0.6
988,674 + -0.2
988,701 + +0.1
988,701 + -1.2
988,702 - -0.8
988,705 + -0.2
988,706 - -0.8
988,732 + -0.0
988,732 + -0.8
988,735 - +0.2
988,741 + +0.4
988,742 - +0.4
988,743 + -0.2
988,744 - +0.1
988,778 + +0.9
988,778 + +0.3
988,778 + -1.0
988,778 + -0.7
988,778 + +0.4
988,778 + +0.9
988,778 + -0.8
988,778 + +1.0
988,780 + +0.6
988,781 - +0.1
988,862 - -1.2

Or see this region's nucleotide sequence