Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00764

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00761 and OHPLBJKB_00762 overlap by 8 nucleotidesOHPLBJKB_00762 and OHPLBJKB_00763 are separated by 7 nucleotidesOHPLBJKB_00763 and OHPLBJKB_00764 overlap by 4 nucleotidesOHPLBJKB_00764 and OHPLBJKB_00765 are separated by 17 nucleotidesOHPLBJKB_00765 and OHPLBJKB_00766 are separated by 17 nucleotides OHPLBJKB_00761: OHPLBJKB_00761 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR, at 783,580 to 784,716 _00761 OHPLBJKB_00762: OHPLBJKB_00762 - dITP/XTP pyrophosphatase, at 784,709 to 785,302 _00762 OHPLBJKB_00763: OHPLBJKB_00763 - hypothetical protein, at 785,310 to 785,600 _00763 OHPLBJKB_00764: OHPLBJKB_00764 - hypothetical protein, at 785,597 to 786,163 _00764 OHPLBJKB_00765: OHPLBJKB_00765 - Pyridoxal phosphate homeostasis protein, at 786,181 to 786,885 _00765 OHPLBJKB_00766: OHPLBJKB_00766 - putative protein YggR, at 786,903 to 787,883 _00766 Position (kb) 785 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1at 784.601 kb on + strand, within OHPLBJKB_00761at 784.601 kb on + strand, within OHPLBJKB_00761at 784.602 kb on - strand, within OHPLBJKB_00761at 784.689 kb on - strandat 784.717 kb on + strandat 784.717 kb on + strandat 784.722 kb on - strandat 784.817 kb on + strand, within OHPLBJKB_00762at 784.818 kb on - strand, within OHPLBJKB_00762at 784.871 kb on - strand, within OHPLBJKB_00762at 784.871 kb on - strand, within OHPLBJKB_00762at 784.932 kb on + strand, within OHPLBJKB_00762at 784.932 kb on + strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.933 kb on - strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.934 kb on + strand, within OHPLBJKB_00762at 784.935 kb on - strand, within OHPLBJKB_00762at 785.081 kb on + strand, within OHPLBJKB_00762at 785.082 kb on - strand, within OHPLBJKB_00762at 785.302 kb on + strandat 785.303 kb on - strandat 785.303 kb on - strandat 785.307 kb on + strandat 785.308 kb on - strandat 785.311 kb on + strandat 785.311 kb on + strandat 785.311 kb on + strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.312 kb on - strandat 785.315 kb on + strandat 785.315 kb on + strandat 785.316 kb on - strandat 785.319 kb on + strandat 785.320 kb on - strandat 785.400 kb on + strand, within OHPLBJKB_00763at 785.400 kb on + strand, within OHPLBJKB_00763at 785.401 kb on - strand, within OHPLBJKB_00763at 785.401 kb on - strand, within OHPLBJKB_00763at 785.401 kb on - strand, within OHPLBJKB_00763at 785.499 kb on - strand, within OHPLBJKB_00763at 785.515 kb on - strand, within OHPLBJKB_00763at 785.525 kb on + strand, within OHPLBJKB_00763at 785.525 kb on + strand, within OHPLBJKB_00763at 785.525 kb on + strand, within OHPLBJKB_00763at 785.526 kb on - strand, within OHPLBJKB_00763at 785.552 kb on + strand, within OHPLBJKB_00763at 785.552 kb on + strand, within OHPLBJKB_00763at 785.552 kb on + strand, within OHPLBJKB_00763at 785.553 kb on - strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.554 kb on + strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.555 kb on - strand, within OHPLBJKB_00763at 785.562 kb on + strand, within OHPLBJKB_00763at 785.583 kb on - strandat 785.583 kb on - strandat 785.590 kb on - strandat 785.601 kb on - strandat 785.601 kb on - strandat 785.629 kb on + strandat 785.649 kb on - strandat 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.676 kb on + strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.677 kb on - strand, within OHPLBJKB_00764at 785.781 kb on + strand, within OHPLBJKB_00764at 785.781 kb on + strand, within OHPLBJKB_00764at 785.782 kb on - strand, within OHPLBJKB_00764at 785.795 kb on - strand, within OHPLBJKB_00764at 785.953 kb on + strand, within OHPLBJKB_00764at 785.954 kb on - strand, within OHPLBJKB_00764at 785.955 kb on + strand, within OHPLBJKB_00764at 785.955 kb on + strand, within OHPLBJKB_00764at 785.955 kb on + strand, within OHPLBJKB_00764at 785.956 kb on - strand, within OHPLBJKB_00764at 785.956 kb on - strand, within OHPLBJKB_00764at 786.036 kb on - strand, within OHPLBJKB_00764at 786.045 kb on - strand, within OHPLBJKB_00764at 786.045 kb on - strand, within OHPLBJKB_00764at 786.101 kb on + strand, within OHPLBJKB_00764at 786.104 kb on + strand, within OHPLBJKB_00764at 786.119 kb on - strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.120 kb on + strandat 786.121 kb on - strandat 786.121 kb on - strandat 786.121 kb on - strandat 786.157 kb on + strandat 786.158 kb on - strandat 786.189 kb on + strandat 786.240 kb on + strandat 786.241 kb on - strandat 786.241 kb on - strandat 786.241 kb on - strandat 786.331 kb on + strand, within OHPLBJKB_00765at 786.364 kb on + strand, within OHPLBJKB_00765at 786.364 kb on + strand, within OHPLBJKB_00765at 786.364 kb on + strand, within OHPLBJKB_00765at 786.364 kb on + strand, within OHPLBJKB_00765at 786.364 kb on + strand, within OHPLBJKB_00765at 786.365 kb on - strand, within OHPLBJKB_00765at 786.365 kb on - strand, within OHPLBJKB_00765at 786.369 kb on - strand, within OHPLBJKB_00765at 786.369 kb on - strand, within OHPLBJKB_00765at 786.369 kb on - strand, within OHPLBJKB_00765at 786.369 kb on - strand, within OHPLBJKB_00765at 786.369 kb on - strand, within OHPLBJKB_00765at 786.413 kb on - strand, within OHPLBJKB_00765at 786.422 kb on - strand, within OHPLBJKB_00765at 786.478 kb on - strand, within OHPLBJKB_00765at 786.582 kb on + strand, within OHPLBJKB_00765at 786.582 kb on + strand, within OHPLBJKB_00765at 786.582 kb on + strand, within OHPLBJKB_00765at 786.583 kb on - strand, within OHPLBJKB_00765at 786.621 kb on + strand, within OHPLBJKB_00765at 786.622 kb on - strand, within OHPLBJKB_00765at 786.624 kb on + strand, within OHPLBJKB_00765at 786.655 kb on + strand, within OHPLBJKB_00765at 786.655 kb on + strand, within OHPLBJKB_00765at 786.656 kb on - strand, within OHPLBJKB_00765at 786.656 kb on - strand, within OHPLBJKB_00765at 786.693 kb on + strand, within OHPLBJKB_00765at 786.693 kb on + strand, within OHPLBJKB_00765at 786.693 kb on + strand, within OHPLBJKB_00765at 786.693 kb on + strand, within OHPLBJKB_00765at 786.697 kb on + strand, within OHPLBJKB_00765at 786.697 kb on + strand, within OHPLBJKB_00765at 786.698 kb on - strand, within OHPLBJKB_00765at 786.713 kb on + strand, within OHPLBJKB_00765at 786.714 kb on - strand, within OHPLBJKB_00765at 786.714 kb on - strand, within OHPLBJKB_00765at 786.714 kb on - strand, within OHPLBJKB_00765at 786.799 kb on - strand, within OHPLBJKB_00765at 786.876 kb on + strandat 786.899 kb on + strandat 786.899 kb on + strandat 786.900 kb on - strandat 786.900 kb on - strandat 786.900 kb on - strandat 786.900 kb on - strandat 786.900 kb on - strandat 786.900 kb on - strandat 786.900 kb on - strandat 786.902 kb on + strandat 786.929 kb on + strandat 786.929 kb on + strandat 786.935 kb on - strandat 786.955 kb on + strandat 786.955 kb on + strandat 786.955 kb on + strandat 786.955 kb on + strandat 786.956 kb on - strandat 786.956 kb on - strandat 786.956 kb on - strandat 786.956 kb on - strandat 787.043 kb on - strand, within OHPLBJKB_00766

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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784,601 + OHPLBJKB_00761 0.90 -0.3
784,601 + OHPLBJKB_00761 0.90 -0.7
784,602 - OHPLBJKB_00761 0.90 -1.3
784,689 - +0.2
784,717 + -0.3
784,717 + -0.0
784,722 - +0.7
784,817 + OHPLBJKB_00762 0.18 -0.9
784,818 - OHPLBJKB_00762 0.18 -0.1
784,871 - OHPLBJKB_00762 0.27 -0.1
784,871 - OHPLBJKB_00762 0.27 -0.2
784,932 + OHPLBJKB_00762 0.38 -0.3
784,932 + OHPLBJKB_00762 0.38 -0.2
784,933 - OHPLBJKB_00762 0.38 +1.1
784,933 - OHPLBJKB_00762 0.38 +0.3
784,933 - OHPLBJKB_00762 0.38 -0.5
784,933 - OHPLBJKB_00762 0.38 -0.6
784,934 + OHPLBJKB_00762 0.38 +0.3
784,934 + OHPLBJKB_00762 0.38 -0.8
784,934 + OHPLBJKB_00762 0.38 -0.8
784,934 + OHPLBJKB_00762 0.38 -0.6
784,934 + OHPLBJKB_00762 0.38 +0.3
784,935 - OHPLBJKB_00762 0.38 +0.2
785,081 + OHPLBJKB_00762 0.63 +1.0
785,082 - OHPLBJKB_00762 0.63 +0.0
785,302 + +0.6
785,303 - -0.6
785,303 - -0.4
785,307 + -1.1
785,308 - -0.1
785,311 + -0.5
785,311 + -1.2
785,311 + -1.4
785,312 - -1.2
785,312 - +0.2
785,312 - -0.5
785,312 - -0.9
785,312 - -0.3
785,312 - +1.0
785,315 + -0.6
785,315 + -1.1
785,316 - +0.8
785,319 + -1.9
785,320 - -1.3
785,400 + OHPLBJKB_00763 0.31 +0.5
785,400 + OHPLBJKB_00763 0.31 +0.6
785,401 - OHPLBJKB_00763 0.31 -0.1
785,401 - OHPLBJKB_00763 0.31 -0.1
785,401 - OHPLBJKB_00763 0.31 +0.0
785,499 - OHPLBJKB_00763 0.65 +0.5
785,515 - OHPLBJKB_00763 0.70 +0.8
785,525 + OHPLBJKB_00763 0.74 -0.8
785,525 + OHPLBJKB_00763 0.74 -0.6
785,525 + OHPLBJKB_00763 0.74 +0.0
785,526 - OHPLBJKB_00763 0.74 +0.8
785,552 + OHPLBJKB_00763 0.83 +0.2
785,552 + OHPLBJKB_00763 0.83 -0.5
785,552 + OHPLBJKB_00763 0.83 +0.9
785,553 - OHPLBJKB_00763 0.84 -0.4
785,554 + OHPLBJKB_00763 0.84 +0.3
785,554 + OHPLBJKB_00763 0.84 +0.5
785,554 + OHPLBJKB_00763 0.84 -1.2
785,554 + OHPLBJKB_00763 0.84 -0.7
785,554 + OHPLBJKB_00763 0.84 -2.1
785,554 + OHPLBJKB_00763 0.84 +0.2
785,555 - OHPLBJKB_00763 0.84 -0.0
785,555 - OHPLBJKB_00763 0.84 -0.7
785,555 - OHPLBJKB_00763 0.84 +0.1
785,555 - OHPLBJKB_00763 0.84 +0.8
785,562 + OHPLBJKB_00763 0.87 -1.0
785,583 - -0.4
785,583 - -0.9
785,590 - +0.1
785,601 - +0.0
785,601 - -0.7
785,629 + +0.7
785,649 - -0.1
785,676 + OHPLBJKB_00764 0.14 -3.1
785,676 + OHPLBJKB_00764 0.14 -1.1
785,676 + OHPLBJKB_00764 0.14 -0.2
785,676 + OHPLBJKB_00764 0.14 +0.9
785,676 + OHPLBJKB_00764 0.14 -1.0
785,677 - OHPLBJKB_00764 0.14 -0.3
785,677 - OHPLBJKB_00764 0.14 -0.6
785,677 - OHPLBJKB_00764 0.14 -1.0
785,677 - OHPLBJKB_00764 0.14 +0.3
785,677 - OHPLBJKB_00764 0.14 -0.5
785,677 - OHPLBJKB_00764 0.14 -0.1
785,677 - OHPLBJKB_00764 0.14 -0.0
785,781 + OHPLBJKB_00764 0.32 -0.8
785,781 + OHPLBJKB_00764 0.32 -1.2
785,782 - OHPLBJKB_00764 0.33 -0.6
785,795 - OHPLBJKB_00764 0.35 -0.5
785,953 + OHPLBJKB_00764 0.63 -2.0
785,954 - OHPLBJKB_00764 0.63 +0.3
785,955 + OHPLBJKB_00764 0.63 -1.8
785,955 + OHPLBJKB_00764 0.63 -0.3
785,955 + OHPLBJKB_00764 0.63 -0.5
785,956 - OHPLBJKB_00764 0.63 -0.4
785,956 - OHPLBJKB_00764 0.63 +0.5
786,036 - OHPLBJKB_00764 0.77 -0.3
786,045 - OHPLBJKB_00764 0.79 -1.3
786,045 - OHPLBJKB_00764 0.79 +0.7
786,101 + OHPLBJKB_00764 0.89 +1.4
786,104 + OHPLBJKB_00764 0.89 +0.6
786,119 - -0.6
786,120 + -0.0
786,120 + -0.2
786,120 + +1.4
786,120 + +0.4
786,120 + +1.0
786,121 - -0.6
786,121 - -0.1
786,121 - -0.7
786,157 + +0.8
786,158 - +0.1
786,189 + -0.8
786,240 + -0.6
786,241 - -0.4
786,241 - -0.2
786,241 - +0.1
786,331 + OHPLBJKB_00765 0.21 -1.2
786,364 + OHPLBJKB_00765 0.26 +0.2
786,364 + OHPLBJKB_00765 0.26 +0.4
786,364 + OHPLBJKB_00765 0.26 -0.4
786,364 + OHPLBJKB_00765 0.26 +0.3
786,364 + OHPLBJKB_00765 0.26 -0.7
786,365 - OHPLBJKB_00765 0.26 +0.1
786,365 - OHPLBJKB_00765 0.26 -0.7
786,369 - OHPLBJKB_00765 0.27 +0.2
786,369 - OHPLBJKB_00765 0.27 +0.9
786,369 - OHPLBJKB_00765 0.27 -0.1
786,369 - OHPLBJKB_00765 0.27 -0.1
786,369 - OHPLBJKB_00765 0.27 +0.1
786,413 - OHPLBJKB_00765 0.33 +0.2
786,422 - OHPLBJKB_00765 0.34 -0.4
786,478 - OHPLBJKB_00765 0.42 -0.7
786,582 + OHPLBJKB_00765 0.57 +0.1
786,582 + OHPLBJKB_00765 0.57 -0.4
786,582 + OHPLBJKB_00765 0.57 -0.1
786,583 - OHPLBJKB_00765 0.57 +0.5
786,621 + OHPLBJKB_00765 0.62 -0.3
786,622 - OHPLBJKB_00765 0.63 -0.6
786,624 + OHPLBJKB_00765 0.63 -0.9
786,655 + OHPLBJKB_00765 0.67 +0.3
786,655 + OHPLBJKB_00765 0.67 -0.4
786,656 - OHPLBJKB_00765 0.67 -1.3
786,656 - OHPLBJKB_00765 0.67 +0.3
786,693 + OHPLBJKB_00765 0.73 +0.9
786,693 + OHPLBJKB_00765 0.73 -1.6
786,693 + OHPLBJKB_00765 0.73 +0.5
786,693 + OHPLBJKB_00765 0.73 +0.5
786,697 + OHPLBJKB_00765 0.73 -0.3
786,697 + OHPLBJKB_00765 0.73 +0.0
786,698 - OHPLBJKB_00765 0.73 -0.6
786,713 + OHPLBJKB_00765 0.75 -0.3
786,714 - OHPLBJKB_00765 0.76 +0.2
786,714 - OHPLBJKB_00765 0.76 +1.2
786,714 - OHPLBJKB_00765 0.76 -0.9
786,799 - OHPLBJKB_00765 0.88 +0.3
786,876 + -0.2
786,899 + -0.2
786,899 + +0.9
786,900 - -0.8
786,900 - +0.5
786,900 - -0.9
786,900 - -1.2
786,900 - +0.2
786,900 - -0.6
786,900 - -1.5
786,902 + -0.3
786,929 + -0.8
786,929 + -0.8
786,935 - -0.6
786,955 + -0.4
786,955 + -0.8
786,955 + +0.6
786,955 + -0.9
786,956 - +0.2
786,956 - -0.0
786,956 - -0.1
786,956 - -0.4
787,043 - OHPLBJKB_00766 0.14 -1.5

Or see this region's nucleotide sequence