Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00536

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00534 and OHPLBJKB_00535 are separated by 148 nucleotidesOHPLBJKB_00535 and OHPLBJKB_00536 are separated by 246 nucleotidesOHPLBJKB_00536 and OHPLBJKB_00537 are separated by 108 nucleotides OHPLBJKB_00534: OHPLBJKB_00534 - tRNA pseudouridine synthase B, at 547,198 to 548,142 _00534 OHPLBJKB_00535: OHPLBJKB_00535 - 30S ribosomal protein S15, at 548,291 to 548,560 _00535 OHPLBJKB_00536: OHPLBJKB_00536 - Polyribonucleotide nucleotidyltransferase, at 548,807 to 550,942 _00536 OHPLBJKB_00537: OHPLBJKB_00537 - Lipoprotein NlpI, at 551,051 to 551,935 _00537 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 547.815 kb on + strand, within OHPLBJKB_00534at 547.816 kb on - strand, within OHPLBJKB_00534at 547.816 kb on - strand, within OHPLBJKB_00534at 547.816 kb on - strand, within OHPLBJKB_00534at 547.904 kb on + strand, within OHPLBJKB_00534at 547.916 kb on + strand, within OHPLBJKB_00534at 547.917 kb on - strand, within OHPLBJKB_00534at 547.984 kb on + strand, within OHPLBJKB_00534at 548.010 kb on + strand, within OHPLBJKB_00534at 548.010 kb on + strand, within OHPLBJKB_00534at 548.011 kb on - strand, within OHPLBJKB_00534at 548.011 kb on - strand, within OHPLBJKB_00534at 548.141 kb on - strandat 548.182 kb on + strandat 548.223 kb on + strandat 548.228 kb on + strandat 548.228 kb on + strandat 548.228 kb on + strandat 548.634 kb on + strandat 548.634 kb on + strandat 548.634 kb on + strandat 548.635 kb on - strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.639 kb on + strandat 548.640 kb on - strandat 548.640 kb on - strandat 548.640 kb on - strandat 548.640 kb on - strandat 548.704 kb on + strandat 548.704 kb on + strandat 548.704 kb on + strandat 548.704 kb on + strandat 548.705 kb on - strandat 548.705 kb on - strandat 548.705 kb on - strandat 548.728 kb on - strandat 548.728 kb on - strandat 548.803 kb on + strandat 548.803 kb on + strandat 548.803 kb on + strandat 548.803 kb on + strandat 548.804 kb on - strandat 548.804 kb on - strandat 548.905 kb on + strandat 548.993 kb on + strandat 548.994 kb on - strandat 549.004 kb on + strandat 549.004 kb on + strandat 549.004 kb on + strandat 549.005 kb on - strandat 549.009 kb on - strandat 549.233 kb on - strand, within OHPLBJKB_00536at 549.267 kb on + strand, within OHPLBJKB_00536at 549.267 kb on + strand, within OHPLBJKB_00536at 549.272 kb on + strand, within OHPLBJKB_00536at 549.273 kb on - strand, within OHPLBJKB_00536at 549.287 kb on + strand, within OHPLBJKB_00536at 549.287 kb on + strand, within OHPLBJKB_00536at 549.287 kb on + strand, within OHPLBJKB_00536at 549.288 kb on - strand, within OHPLBJKB_00536at 549.288 kb on - strand, within OHPLBJKB_00536at 549.288 kb on - strand, within OHPLBJKB_00536at 549.363 kb on + strand, within OHPLBJKB_00536at 549.364 kb on - strand, within OHPLBJKB_00536at 549.364 kb on - strand, within OHPLBJKB_00536at 549.420 kb on + strand, within OHPLBJKB_00536at 549.532 kb on - strand, within OHPLBJKB_00536at 549.733 kb on - strand, within OHPLBJKB_00536at 550.073 kb on + strand, within OHPLBJKB_00536at 550.080 kb on + strand, within OHPLBJKB_00536at 550.080 kb on + strand, within OHPLBJKB_00536at 550.080 kb on + strand, within OHPLBJKB_00536at 550.081 kb on - strand, within OHPLBJKB_00536at 550.081 kb on - strand, within OHPLBJKB_00536at 550.081 kb on - strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.236 kb on + strand, within OHPLBJKB_00536at 550.236 kb on + strand, within OHPLBJKB_00536at 550.236 kb on + strand, within OHPLBJKB_00536at 550.237 kb on - strand, within OHPLBJKB_00536at 550.237 kb on - strand, within OHPLBJKB_00536at 550.310 kb on - strand, within OHPLBJKB_00536at 550.474 kb on + strand, within OHPLBJKB_00536at 550.531 kb on - strand, within OHPLBJKB_00536at 550.631 kb on - strand, within OHPLBJKB_00536at 550.679 kb on + strand, within OHPLBJKB_00536at 550.680 kb on - strand, within OHPLBJKB_00536at 550.687 kb on + strand, within OHPLBJKB_00536at 550.688 kb on - strand, within OHPLBJKB_00536at 550.752 kb on + strandat 550.753 kb on - strandat 550.941 kb on - strandat 551.001 kb on - strandat 551.092 kb on + strandat 551.092 kb on + strandat 551.092 kb on + strandat 551.092 kb on + strandat 551.093 kb on - strandat 551.093 kb on - strandat 551.093 kb on - strandat 551.110 kb on + strandat 551.113 kb on + strandat 551.113 kb on + strandat 551.113 kb on + strandat 551.114 kb on - strandat 551.114 kb on - strandat 551.114 kb on - strandat 551.125 kb on + strandat 551.163 kb on + strand, within OHPLBJKB_00537at 551.164 kb on - strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.244 kb on + strand, within OHPLBJKB_00537at 551.244 kb on + strand, within OHPLBJKB_00537at 551.245 kb on - strand, within OHPLBJKB_00537at 551.245 kb on - strand, within OHPLBJKB_00537at 551.246 kb on + strand, within OHPLBJKB_00537at 551.246 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.265 kb on - strand, within OHPLBJKB_00537at 551.343 kb on + strand, within OHPLBJKB_00537at 551.351 kb on + strand, within OHPLBJKB_00537at 551.361 kb on + strand, within OHPLBJKB_00537at 551.361 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.367 kb on + strand, within OHPLBJKB_00537at 551.396 kb on + strand, within OHPLBJKB_00537at 551.435 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.469 kb on + strand, within OHPLBJKB_00537at 551.469 kb on + strand, within OHPLBJKB_00537at 551.471 kb on + strand, within OHPLBJKB_00537at 551.471 kb on + strand, within OHPLBJKB_00537at 551.519 kb on + strand, within OHPLBJKB_00537at 551.561 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.773 kb on + strand, within OHPLBJKB_00537at 551.773 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.780 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.933 kb on + strandat 551.933 kb on + strandat 551.942 kb on + strandat 551.942 kb on + strandat 551.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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547,815 + OHPLBJKB_00534 0.65 +0.1
547,816 - OHPLBJKB_00534 0.65 -0.4
547,816 - OHPLBJKB_00534 0.65 -0.1
547,816 - OHPLBJKB_00534 0.65 +0.4
547,904 + OHPLBJKB_00534 0.75 -0.8
547,916 + OHPLBJKB_00534 0.76 +0.5
547,917 - OHPLBJKB_00534 0.76 -1.7
547,984 + OHPLBJKB_00534 0.83 -0.0
548,010 + OHPLBJKB_00534 0.86 -0.1
548,010 + OHPLBJKB_00534 0.86 +0.0
548,011 - OHPLBJKB_00534 0.86 -0.1
548,011 - OHPLBJKB_00534 0.86 -1.5
548,141 - -0.6
548,182 + +0.0
548,223 + +0.4
548,228 + -0.3
548,228 + +0.7
548,228 + -0.6
548,634 + -0.0
548,634 + +0.4
548,634 + +0.1
548,635 - -1.5
548,639 + -0.1
548,639 + +0.3
548,639 + +1.0
548,639 + -2.3
548,639 + -0.3
548,639 + +0.5
548,640 - +0.4
548,640 - +0.1
548,640 - +0.4
548,640 - +0.1
548,704 + +0.8
548,704 + +0.9
548,704 + -0.6
548,704 + +0.2
548,705 - +3.0
548,705 - -0.6
548,705 - +0.4
548,728 - -0.3
548,728 - +0.3
548,803 + -1.1
548,803 + -1.7
548,803 + -0.1
548,803 + -0.3
548,804 - -2.8
548,804 - -1.6
548,905 + -0.4
548,993 + -0.3
548,994 - -0.2
549,004 + +0.1
549,004 + +0.4
549,004 + -0.1
549,005 - +0.2
549,009 - +1.3
549,233 - OHPLBJKB_00536 0.20 -1.0
549,267 + OHPLBJKB_00536 0.22 +0.0
549,267 + OHPLBJKB_00536 0.22 +0.0
549,272 + OHPLBJKB_00536 0.22 +0.0
549,273 - OHPLBJKB_00536 0.22 +0.3
549,287 + OHPLBJKB_00536 0.22 -1.4
549,287 + OHPLBJKB_00536 0.22 +1.3
549,287 + OHPLBJKB_00536 0.22 +0.1
549,288 - OHPLBJKB_00536 0.23 -0.3
549,288 - OHPLBJKB_00536 0.23 -0.9
549,288 - OHPLBJKB_00536 0.23 +0.0
549,363 + OHPLBJKB_00536 0.26 -0.8
549,364 - OHPLBJKB_00536 0.26 -1.2
549,364 - OHPLBJKB_00536 0.26 +0.4
549,420 + OHPLBJKB_00536 0.29 -0.8
549,532 - OHPLBJKB_00536 0.34 -1.6
549,733 - OHPLBJKB_00536 0.43 +0.8
550,073 + OHPLBJKB_00536 0.59 +1.3
550,080 + OHPLBJKB_00536 0.60 -1.1
550,080 + OHPLBJKB_00536 0.60 -1.1
550,080 + OHPLBJKB_00536 0.60 +0.9
550,081 - OHPLBJKB_00536 0.60 -0.1
550,081 - OHPLBJKB_00536 0.60 -0.1
550,081 - OHPLBJKB_00536 0.60 -0.2
550,229 + OHPLBJKB_00536 0.67 +0.3
550,229 + OHPLBJKB_00536 0.67 -0.2
550,229 + OHPLBJKB_00536 0.67 -1.3
550,229 + OHPLBJKB_00536 0.67 -1.1
550,229 + OHPLBJKB_00536 0.67 -0.9
550,229 + OHPLBJKB_00536 0.67 -1.0
550,229 + OHPLBJKB_00536 0.67 -0.6
550,229 + OHPLBJKB_00536 0.67 +2.0
550,229 + OHPLBJKB_00536 0.67 -2.1
550,229 + OHPLBJKB_00536 0.67 -0.4
550,229 + OHPLBJKB_00536 0.67 -1.4
550,229 + OHPLBJKB_00536 0.67 -0.4
550,230 - OHPLBJKB_00536 0.67 +0.2
550,230 - OHPLBJKB_00536 0.67 +1.2
550,230 - OHPLBJKB_00536 0.67 +2.0
550,230 - OHPLBJKB_00536 0.67 +0.4
550,236 + OHPLBJKB_00536 0.67 -1.7
550,236 + OHPLBJKB_00536 0.67 -1.1
550,236 + OHPLBJKB_00536 0.67 +1.0
550,237 - OHPLBJKB_00536 0.67 -1.1
550,237 - OHPLBJKB_00536 0.67 -1.8
550,310 - OHPLBJKB_00536 0.70 -1.1
550,474 + OHPLBJKB_00536 0.78 +0.9
550,531 - OHPLBJKB_00536 0.81 -1.3
550,631 - OHPLBJKB_00536 0.85 +0.6
550,679 + OHPLBJKB_00536 0.88 +0.0
550,680 - OHPLBJKB_00536 0.88 +1.0
550,687 + OHPLBJKB_00536 0.88 -0.9
550,688 - OHPLBJKB_00536 0.88 +0.7
550,752 + +0.7
550,753 - +0.6
550,941 - -1.4
551,001 - -0.1
551,092 + -0.1
551,092 + -0.3
551,092 + +0.3
551,092 + -0.6
551,093 - +0.3
551,093 - -0.5
551,093 - -0.7
551,110 + -0.3
551,113 + -1.7
551,113 + +0.5
551,113 + -1.7
551,114 - -0.7
551,114 - -0.0
551,114 - -0.3
551,125 + +0.4
551,163 + OHPLBJKB_00537 0.13 -0.8
551,164 - OHPLBJKB_00537 0.13 +0.3
551,188 + OHPLBJKB_00537 0.15 -0.4
551,188 + OHPLBJKB_00537 0.15 -0.1
551,188 + OHPLBJKB_00537 0.15 -0.2
551,188 + OHPLBJKB_00537 0.15 +0.8
551,244 + OHPLBJKB_00537 0.22 -1.0
551,244 + OHPLBJKB_00537 0.22 +0.5
551,245 - OHPLBJKB_00537 0.22 +0.1
551,245 - OHPLBJKB_00537 0.22 -1.2
551,246 + OHPLBJKB_00537 0.22 -0.0
551,246 + OHPLBJKB_00537 0.22 -0.3
551,264 + OHPLBJKB_00537 0.24 -0.3
551,264 + OHPLBJKB_00537 0.24 +0.4
551,264 + OHPLBJKB_00537 0.24 +0.1
551,264 + OHPLBJKB_00537 0.24 +0.0
551,265 - OHPLBJKB_00537 0.24 +1.0
551,343 + OHPLBJKB_00537 0.33 -1.8
551,351 + OHPLBJKB_00537 0.34 -0.9
551,361 + OHPLBJKB_00537 0.35 -0.7
551,361 + OHPLBJKB_00537 0.35 -0.7
551,363 + OHPLBJKB_00537 0.35 -1.1
551,363 + OHPLBJKB_00537 0.35 +0.0
551,363 + OHPLBJKB_00537 0.35 -0.2
551,363 + OHPLBJKB_00537 0.35 -0.2
551,367 + OHPLBJKB_00537 0.36 +0.1
551,396 + OHPLBJKB_00537 0.39 +1.0
551,435 + OHPLBJKB_00537 0.43 -0.4
551,441 + OHPLBJKB_00537 0.44 -0.1
551,441 + OHPLBJKB_00537 0.44 +0.1
551,441 + OHPLBJKB_00537 0.44 +0.4
551,469 + OHPLBJKB_00537 0.47 -0.6
551,469 + OHPLBJKB_00537 0.47 -0.3
551,471 + OHPLBJKB_00537 0.47 -0.3
551,471 + OHPLBJKB_00537 0.47 -2.1
551,519 + OHPLBJKB_00537 0.53 +0.2
551,561 + OHPLBJKB_00537 0.58 -0.9
551,765 + OHPLBJKB_00537 0.81 -0.3
551,765 + OHPLBJKB_00537 0.81 -0.8
551,765 + OHPLBJKB_00537 0.81 -0.7
551,765 + OHPLBJKB_00537 0.81 +0.4
551,765 + OHPLBJKB_00537 0.81 -0.5
551,773 + OHPLBJKB_00537 0.82 -0.9
551,773 + OHPLBJKB_00537 0.82 +0.3
551,777 + OHPLBJKB_00537 0.82 -0.1
551,777 + OHPLBJKB_00537 0.82 -0.2
551,777 + OHPLBJKB_00537 0.82 -0.9
551,777 + OHPLBJKB_00537 0.82 -0.2
551,777 + OHPLBJKB_00537 0.82 +0.7
551,777 + OHPLBJKB_00537 0.82 -1.1
551,777 + OHPLBJKB_00537 0.82 -0.3
551,780 + OHPLBJKB_00537 0.82 -0.1
551,784 + OHPLBJKB_00537 0.83 -1.6
551,784 + OHPLBJKB_00537 0.83 -0.5
551,784 + OHPLBJKB_00537 0.83 -1.1
551,784 + OHPLBJKB_00537 0.83 -0.3
551,933 + -0.0
551,933 + -0.2
551,942 + +0.6
551,942 + -2.1
551,942 + -0.6

Or see this region's nucleotide sequence