Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00518 and OHPLBJKB_00519 are separated by 247 nucleotides OHPLBJKB_00519 and OHPLBJKB_00520 are separated by 155 nucleotides OHPLBJKB_00520 and OHPLBJKB_00521 are separated by 125 nucleotides
OHPLBJKB_00518: OHPLBJKB_00518 - D-alanyl-D-alanine carboxypeptidase DacB, at 529,579 to 531,012
_00518
OHPLBJKB_00519: OHPLBJKB_00519 - Transcription elongation factor GreA, at 531,260 to 531,736
_00519
OHPLBJKB_00520: OHPLBJKB_00520 - RNA-binding protein YhbY, at 531,892 to 532,185
_00520
OHPLBJKB_00521: OHPLBJKB_00521 - Ribosomal RNA large subunit methyltransferase E, at 532,311 to 532,940
_00521
Position (kb) 531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.367 kb on - strand, within OHPLBJKB_00518 at 530.367 kb on - strand, within OHPLBJKB_00518 at 530.401 kb on + strand, within OHPLBJKB_00518 at 530.401 kb on + strand, within OHPLBJKB_00518 at 530.402 kb on - strand, within OHPLBJKB_00518 at 530.429 kb on + strand, within OHPLBJKB_00518 at 530.430 kb on - strand, within OHPLBJKB_00518 at 530.430 kb on - strand, within OHPLBJKB_00518 at 530.443 kb on + strand, within OHPLBJKB_00518 at 530.443 kb on + strand, within OHPLBJKB_00518 at 530.444 kb on - strand, within OHPLBJKB_00518 at 530.444 kb on - strand, within OHPLBJKB_00518 at 530.444 kb on - strand, within OHPLBJKB_00518 at 530.444 kb on - strand, within OHPLBJKB_00518 at 530.444 kb on - strand, within OHPLBJKB_00518 at 530.446 kb on - strand, within OHPLBJKB_00518 at 530.477 kb on + strand, within OHPLBJKB_00518 at 530.478 kb on - strand, within OHPLBJKB_00518 at 530.509 kb on + strand, within OHPLBJKB_00518 at 530.509 kb on + strand, within OHPLBJKB_00518 at 530.509 kb on + strand, within OHPLBJKB_00518 at 530.509 kb on + strand, within OHPLBJKB_00518 at 530.510 kb on - strand, within OHPLBJKB_00518 at 530.510 kb on - strand, within OHPLBJKB_00518 at 530.510 kb on - strand, within OHPLBJKB_00518 at 530.598 kb on + strand, within OHPLBJKB_00518 at 530.598 kb on + strand, within OHPLBJKB_00518 at 530.598 kb on + strand, within OHPLBJKB_00518 at 530.599 kb on - strand, within OHPLBJKB_00518 at 530.602 kb on + strand, within OHPLBJKB_00518 at 530.603 kb on - strand, within OHPLBJKB_00518 at 530.603 kb on - strand, within OHPLBJKB_00518 at 530.603 kb on - strand, within OHPLBJKB_00518 at 530.722 kb on - strand, within OHPLBJKB_00518 at 530.726 kb on - strand, within OHPLBJKB_00518 at 530.827 kb on - strand, within OHPLBJKB_00518 at 530.859 kb on - strand, within OHPLBJKB_00518 at 530.931 kb on + strand at 530.932 kb on - strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.934 kb on + strand at 530.935 kb on - strand at 530.935 kb on - strand at 530.935 kb on - strand at 530.935 kb on - strand at 530.935 kb on - strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.936 kb on + strand at 530.937 kb on - strand at 530.937 kb on - strand at 530.937 kb on - strand at 530.937 kb on - strand at 530.971 kb on + strand at 530.971 kb on + strand at 530.972 kb on - strand at 530.973 kb on + strand at 530.973 kb on + strand at 530.973 kb on + strand at 530.973 kb on + strand at 530.974 kb on - strand at 530.974 kb on - strand at 530.974 kb on - strand at 530.995 kb on - strand at 531.048 kb on - strand at 531.048 kb on - strand at 531.051 kb on - strand at 531.068 kb on - strand at 531.072 kb on + strand at 531.072 kb on + strand at 531.072 kb on + strand at 531.073 kb on - strand at 531.073 kb on - strand at 531.127 kb on + strand at 531.128 kb on - strand at 531.188 kb on + strand at 531.252 kb on + strand at 531.252 kb on + strand at 531.252 kb on + strand at 531.252 kb on + strand at 531.253 kb on - strand at 531.253 kb on - strand at 531.253 kb on - strand at 531.253 kb on - strand at 531.253 kb on - strand at 531.255 kb on - strand at 531.269 kb on - strand at 531.573 kb on - strand, within OHPLBJKB_00519 at 531.573 kb on - strand, within OHPLBJKB_00519 at 531.605 kb on - strand, within OHPLBJKB_00519 at 531.714 kb on + strand at 531.714 kb on + strand at 531.718 kb on + strand at 531.719 kb on - strand at 531.719 kb on - strand at 531.719 kb on - strand at 531.728 kb on + strand at 531.729 kb on - strand at 531.729 kb on - strand at 531.748 kb on + strand at 531.766 kb on - strand at 531.766 kb on - strand at 531.803 kb on + strand at 531.876 kb on + strand at 531.876 kb on + strand at 531.877 kb on - strand at 531.912 kb on + strand at 531.922 kb on - strand, within OHPLBJKB_00520 at 531.922 kb on - strand, within OHPLBJKB_00520 at 531.922 kb on - strand, within OHPLBJKB_00520 at 531.949 kb on - strand, within OHPLBJKB_00520 at 531.966 kb on + strand, within OHPLBJKB_00520 at 531.966 kb on + strand, within OHPLBJKB_00520 at 531.966 kb on + strand, within OHPLBJKB_00520 at 531.967 kb on - strand, within OHPLBJKB_00520 at 531.967 kb on - strand, within OHPLBJKB_00520 at 531.990 kb on + strand, within OHPLBJKB_00520 at 532.011 kb on + strand, within OHPLBJKB_00520 at 532.170 kb on + strand at 532.171 kb on - strand at 532.188 kb on + strand at 532.241 kb on + strand at 532.241 kb on + strand at 532.243 kb on + strand at 532.243 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 530,367 - OHPLBJKB_00518 0.55 -0.8 530,367 - OHPLBJKB_00518 0.55 +0.3 530,401 + OHPLBJKB_00518 0.57 +0.3 530,401 + OHPLBJKB_00518 0.57 +0.5 530,402 - OHPLBJKB_00518 0.57 +0.3 530,429 + OHPLBJKB_00518 0.59 -0.4 530,430 - OHPLBJKB_00518 0.59 -2.2 530,430 - OHPLBJKB_00518 0.59 +0.8 530,443 + OHPLBJKB_00518 0.60 +0.3 530,443 + OHPLBJKB_00518 0.60 +1.0 530,444 - OHPLBJKB_00518 0.60 -0.1 530,444 - OHPLBJKB_00518 0.60 +0.4 530,444 - OHPLBJKB_00518 0.60 -0.6 530,444 - OHPLBJKB_00518 0.60 -0.5 530,444 - OHPLBJKB_00518 0.60 +0.0 530,446 - OHPLBJKB_00518 0.60 +0.6 530,477 + OHPLBJKB_00518 0.63 +0.6 530,478 - OHPLBJKB_00518 0.63 -0.5 530,509 + OHPLBJKB_00518 0.65 +1.0 530,509 + OHPLBJKB_00518 0.65 +1.3 530,509 + OHPLBJKB_00518 0.65 +0.2 530,509 + OHPLBJKB_00518 0.65 -1.6 530,510 - OHPLBJKB_00518 0.65 -0.3 530,510 - OHPLBJKB_00518 0.65 -0.3 530,510 - OHPLBJKB_00518 0.65 +0.4 530,598 + OHPLBJKB_00518 0.71 -0.1 530,598 + OHPLBJKB_00518 0.71 +0.2 530,598 + OHPLBJKB_00518 0.71 -0.2 530,599 - OHPLBJKB_00518 0.71 -0.0 530,602 + OHPLBJKB_00518 0.71 -1.5 530,603 - OHPLBJKB_00518 0.71 +1.6 530,603 - OHPLBJKB_00518 0.71 +0.1 530,603 - OHPLBJKB_00518 0.71 -1.5 530,722 - OHPLBJKB_00518 0.80 -0.2 530,726 - OHPLBJKB_00518 0.80 +0.5 530,827 - OHPLBJKB_00518 0.87 +0.4 530,859 - OHPLBJKB_00518 0.89 -0.3 530,931 + +0.7 530,932 - +0.1 530,934 + -0.7 530,934 + -2.0 530,934 + +0.5 530,934 + +0.2 530,934 + -0.3 530,934 + +0.4 530,934 + +0.7 530,934 + -0.1 530,934 + +0.0 530,934 + +1.0 530,935 - -0.1 530,935 - -0.3 530,935 - +0.6 530,935 - +0.7 530,935 - +0.9 530,936 + -0.3 530,936 + +0.2 530,936 + -0.5 530,936 + +0.5 530,936 + -0.1 530,936 + +0.3 530,936 + -0.7 530,936 + +0.3 530,936 + -1.1 530,936 + -0.2 530,937 - -0.8 530,937 - -0.8 530,937 - +0.3 530,937 - +0.1 530,971 + -0.2 530,971 + +0.0 530,972 - +0.1 530,973 + +0.2 530,973 + -0.7 530,973 + +0.3 530,973 + +2.4 530,974 - -0.1 530,974 - -0.7 530,974 - +0.4 530,995 - +0.2 531,048 - -0.2 531,048 - -0.4 531,051 - -0.3 531,068 - -0.2 531,072 + -0.4 531,072 + -0.2 531,072 + +0.2 531,073 - +0.7 531,073 - +0.0 531,127 + +0.8 531,128 - +0.6 531,188 + +0.2 531,252 + -0.7 531,252 + +0.0 531,252 + -0.5 531,252 + -0.3 531,253 - -1.0 531,253 - -0.7 531,253 - -1.9 531,253 - -1.5 531,253 - -0.1 531,255 - +0.0 531,269 - +0.2 531,573 - OHPLBJKB_00519 0.66 -2.5 531,573 - OHPLBJKB_00519 0.66 -1.7 531,605 - OHPLBJKB_00519 0.72 +1.0 531,714 + -0.2 531,714 + -1.0 531,718 + -0.8 531,719 - -0.3 531,719 - -0.4 531,719 - -0.6 531,728 + -1.0 531,729 - -1.7 531,729 - +0.1 531,748 + +0.5 531,766 - -0.7 531,766 - +0.2 531,803 + +0.2 531,876 + +0.3 531,876 + -0.7 531,877 - +1.0 531,912 + -0.5 531,922 - OHPLBJKB_00520 0.10 -0.7 531,922 - OHPLBJKB_00520 0.10 -1.0 531,922 - OHPLBJKB_00520 0.10 +1.5 531,949 - OHPLBJKB_00520 0.19 -1.1 531,966 + OHPLBJKB_00520 0.25 -0.7 531,966 + OHPLBJKB_00520 0.25 -1.8 531,966 + OHPLBJKB_00520 0.25 -2.2 531,967 - OHPLBJKB_00520 0.26 -0.6 531,967 - OHPLBJKB_00520 0.26 -0.4 531,990 + OHPLBJKB_00520 0.33 -0.6 532,011 + OHPLBJKB_00520 0.40 -0.1 532,170 + +0.2 532,171 - -0.4 532,188 + -0.3 532,241 + -0.6 532,241 + +0.7 532,243 + +0.3 532,243 + +1.0
Or see this region's nucleotide sequence