Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00473 and OHPLBJKB_00474 are separated by 15 nucleotides OHPLBJKB_00474 and OHPLBJKB_00475 are separated by 394 nucleotides OHPLBJKB_00475 and OHPLBJKB_00476 are separated by 5 nucleotides OHPLBJKB_00476 and OHPLBJKB_00477 are separated by 42 nucleotides
OHPLBJKB_00473: OHPLBJKB_00473 - 50S ribosomal protein L13, at 488,662 to 489,090
_00473
OHPLBJKB_00474: OHPLBJKB_00474 - 30S ribosomal protein S9, at 489,106 to 489,498
_00474
OHPLBJKB_00475: OHPLBJKB_00475 - Stringent starvation protein A, at 489,893 to 490,531
_00475
OHPLBJKB_00476: OHPLBJKB_00476 - Stringent starvation protein B, at 490,537 to 491,034
_00476
OHPLBJKB_00477: OHPLBJKB_00477 - Putative cryptic C4-dicarboxylate transporter DcuD, at 491,077 to 492,066
_00477
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1 at 489.560 kb on - strand at 489.563 kb on + strand at 489.564 kb on - strand at 489.624 kb on - strand at 489.624 kb on - strand at 489.624 kb on - strand at 489.624 kb on - strand at 489.654 kb on + strand at 489.655 kb on - strand at 489.663 kb on + strand at 489.664 kb on - strand at 489.740 kb on + strand at 489.741 kb on - strand at 489.741 kb on - strand at 489.816 kb on + strand at 489.857 kb on + strand at 489.877 kb on - strand at 489.877 kb on - strand at 489.878 kb on + strand at 489.878 kb on + strand at 489.878 kb on + strand at 489.879 kb on - strand at 489.879 kb on - strand at 489.879 kb on - strand at 489.879 kb on - strand at 489.879 kb on - strand at 489.879 kb on - strand at 489.944 kb on - strand at 489.944 kb on - strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.953 kb on + strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.954 kb on - strand at 489.955 kb on + strand at 489.955 kb on + strand at 489.993 kb on + strand, within OHPLBJKB_00475 at 489.993 kb on + strand, within OHPLBJKB_00475 at 489.993 kb on + strand, within OHPLBJKB_00475 at 489.993 kb on + strand, within OHPLBJKB_00475 at 489.994 kb on - strand, within OHPLBJKB_00475 at 489.994 kb on - strand, within OHPLBJKB_00475 at 490.124 kb on + strand, within OHPLBJKB_00475 at 490.125 kb on - strand, within OHPLBJKB_00475 at 490.196 kb on + strand, within OHPLBJKB_00475 at 490.196 kb on + strand, within OHPLBJKB_00475 at 490.196 kb on + strand, within OHPLBJKB_00475 at 490.197 kb on - strand, within OHPLBJKB_00475 at 490.197 kb on - strand, within OHPLBJKB_00475 at 490.197 kb on - strand, within OHPLBJKB_00475 at 490.197 kb on - strand, within OHPLBJKB_00475 at 490.197 kb on - strand, within OHPLBJKB_00475 at 490.279 kb on + strand, within OHPLBJKB_00475 at 490.280 kb on - strand, within OHPLBJKB_00475 at 490.280 kb on - strand, within OHPLBJKB_00475 at 490.371 kb on - strand, within OHPLBJKB_00475 at 490.448 kb on + strand, within OHPLBJKB_00475 at 490.448 kb on + strand, within OHPLBJKB_00475 at 490.448 kb on + strand, within OHPLBJKB_00475 at 490.448 kb on + strand, within OHPLBJKB_00475 at 490.448 kb on + strand, within OHPLBJKB_00475 at 490.449 kb on - strand, within OHPLBJKB_00475 at 490.449 kb on - strand, within OHPLBJKB_00475 at 490.451 kb on - strand, within OHPLBJKB_00475 at 490.530 kb on - strand at 490.530 kb on - strand at 490.553 kb on + strand at 490.554 kb on - strand at 490.554 kb on - strand at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.588 kb on + strand, within OHPLBJKB_00476 at 490.589 kb on - strand, within OHPLBJKB_00476 at 490.691 kb on + strand, within OHPLBJKB_00476 at 490.745 kb on + strand, within OHPLBJKB_00476 at 490.746 kb on - strand, within OHPLBJKB_00476 at 490.816 kb on + strand, within OHPLBJKB_00476 at 490.817 kb on - strand, within OHPLBJKB_00476 at 490.817 kb on - strand, within OHPLBJKB_00476 at 490.817 kb on - strand, within OHPLBJKB_00476 at 490.865 kb on - strand, within OHPLBJKB_00476 at 490.876 kb on - strand, within OHPLBJKB_00476 at 490.876 kb on - strand, within OHPLBJKB_00476 at 491.032 kb on + strand at 491.032 kb on + strand at 491.033 kb on - strand at 491.070 kb on + strand at 491.081 kb on + strand at 491.082 kb on - strand at 491.086 kb on + strand at 491.187 kb on + strand, within OHPLBJKB_00477 at 491.188 kb on - strand, within OHPLBJKB_00477 at 491.188 kb on - strand, within OHPLBJKB_00477 at 491.254 kb on - strand, within OHPLBJKB_00477 at 491.260 kb on + strand, within OHPLBJKB_00477 at 491.261 kb on - strand, within OHPLBJKB_00477 at 491.272 kb on + strand, within OHPLBJKB_00477 at 491.272 kb on + strand, within OHPLBJKB_00477 at 491.272 kb on + strand, within OHPLBJKB_00477 at 491.273 kb on - strand, within OHPLBJKB_00477 at 491.273 kb on - strand, within OHPLBJKB_00477 at 491.273 kb on - strand, within OHPLBJKB_00477 at 491.273 kb on - strand, within OHPLBJKB_00477 at 491.278 kb on + strand, within OHPLBJKB_00477 at 491.278 kb on + strand, within OHPLBJKB_00477 at 491.278 kb on + strand, within OHPLBJKB_00477 at 491.278 kb on + strand, within OHPLBJKB_00477 at 491.278 kb on + strand, within OHPLBJKB_00477 at 491.278 kb on + strand, within OHPLBJKB_00477 at 491.279 kb on - strand, within OHPLBJKB_00477 at 491.279 kb on - strand, within OHPLBJKB_00477 at 491.279 kb on - strand, within OHPLBJKB_00477 at 491.279 kb on - strand, within OHPLBJKB_00477 at 491.279 kb on - strand, within OHPLBJKB_00477 at 491.319 kb on + strand, within OHPLBJKB_00477 at 491.380 kb on - strand, within OHPLBJKB_00477 at 491.380 kb on - strand, within OHPLBJKB_00477 at 491.456 kb on - strand, within OHPLBJKB_00477 at 491.470 kb on + strand, within OHPLBJKB_00477 at 491.470 kb on + strand, within OHPLBJKB_00477 at 491.494 kb on + strand, within OHPLBJKB_00477
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 489,560 - +0.5 489,563 + -0.5 489,564 - -1.0 489,624 - -0.8 489,624 - +0.0 489,624 - -0.1 489,624 - -0.3 489,654 + -1.0 489,655 - -0.2 489,663 + +0.4 489,664 - +0.6 489,740 + -0.7 489,741 - -1.8 489,741 - +0.6 489,816 + +0.4 489,857 + -0.4 489,877 - -0.3 489,877 - -0.9 489,878 + -1.3 489,878 + -1.2 489,878 + -0.2 489,879 - -1.4 489,879 - -0.3 489,879 - +0.3 489,879 - +0.8 489,879 - -0.6 489,879 - -1.1 489,944 - +0.3 489,944 - -0.2 489,953 + -0.9 489,953 + -0.6 489,953 + -0.6 489,953 + -0.5 489,953 + -1.7 489,953 + -0.1 489,953 + -1.1 489,953 + +0.3 489,953 + -0.7 489,953 + +1.1 489,953 + +1.2 489,953 + -0.4 489,953 + -0.5 489,953 + +0.6 489,953 + -0.6 489,953 + +1.0 489,954 - +0.1 489,954 - -0.6 489,954 - +0.2 489,954 - -0.1 489,954 - +0.1 489,954 - -0.4 489,954 - -0.3 489,954 - -0.7 489,954 - +0.4 489,954 - +0.6 489,954 - +0.2 489,954 - -0.1 489,954 - -0.1 489,954 - +0.1 489,954 - -0.2 489,954 - +0.9 489,954 - +1.6 489,954 - -1.0 489,954 - +0.4 489,954 - -0.4 489,954 - -1.3 489,954 - -0.7 489,955 + -0.6 489,955 + -1.0 489,993 + OHPLBJKB_00475 0.16 -1.2 489,993 + OHPLBJKB_00475 0.16 -0.8 489,993 + OHPLBJKB_00475 0.16 -0.1 489,993 + OHPLBJKB_00475 0.16 -0.4 489,994 - OHPLBJKB_00475 0.16 +0.0 489,994 - OHPLBJKB_00475 0.16 -1.3 490,124 + OHPLBJKB_00475 0.36 +0.2 490,125 - OHPLBJKB_00475 0.36 +1.0 490,196 + OHPLBJKB_00475 0.47 +0.1 490,196 + OHPLBJKB_00475 0.47 -0.5 490,196 + OHPLBJKB_00475 0.47 -0.3 490,197 - OHPLBJKB_00475 0.48 -1.6 490,197 - OHPLBJKB_00475 0.48 +0.2 490,197 - OHPLBJKB_00475 0.48 -0.9 490,197 - OHPLBJKB_00475 0.48 -1.5 490,197 - OHPLBJKB_00475 0.48 +1.0 490,279 + OHPLBJKB_00475 0.60 -0.5 490,280 - OHPLBJKB_00475 0.61 -0.8 490,280 - OHPLBJKB_00475 0.61 -2.1 490,371 - OHPLBJKB_00475 0.75 +1.0 490,448 + OHPLBJKB_00475 0.87 -0.8 490,448 + OHPLBJKB_00475 0.87 -1.4 490,448 + OHPLBJKB_00475 0.87 -0.9 490,448 + OHPLBJKB_00475 0.87 -0.5 490,448 + OHPLBJKB_00475 0.87 -1.0 490,449 - OHPLBJKB_00475 0.87 -2.1 490,449 - OHPLBJKB_00475 0.87 +0.7 490,451 - OHPLBJKB_00475 0.87 -0.7 490,530 - +0.6 490,530 - +0.3 490,553 + -1.8 490,554 - -1.7 490,554 - -0.3 490,588 + OHPLBJKB_00476 0.10 -0.4 490,588 + OHPLBJKB_00476 0.10 -0.5 490,588 + OHPLBJKB_00476 0.10 +0.9 490,588 + OHPLBJKB_00476 0.10 -0.0 490,588 + OHPLBJKB_00476 0.10 -0.2 490,588 + OHPLBJKB_00476 0.10 -0.6 490,588 + OHPLBJKB_00476 0.10 -1.4 490,589 - OHPLBJKB_00476 0.10 -0.2 490,691 + OHPLBJKB_00476 0.31 +0.5 490,745 + OHPLBJKB_00476 0.42 +0.1 490,746 - OHPLBJKB_00476 0.42 -0.7 490,816 + OHPLBJKB_00476 0.56 +0.6 490,817 - OHPLBJKB_00476 0.56 +0.8 490,817 - OHPLBJKB_00476 0.56 +0.3 490,817 - OHPLBJKB_00476 0.56 +1.0 490,865 - OHPLBJKB_00476 0.66 -0.4 490,876 - OHPLBJKB_00476 0.68 +1.0 490,876 - OHPLBJKB_00476 0.68 +0.8 491,032 + -0.5 491,032 + -0.4 491,033 - +0.0 491,070 + -0.1 491,081 + +0.1 491,082 - -0.1 491,086 + -1.0 491,187 + OHPLBJKB_00477 0.11 -0.4 491,188 - OHPLBJKB_00477 0.11 +0.5 491,188 - OHPLBJKB_00477 0.11 +0.7 491,254 - OHPLBJKB_00477 0.18 +0.4 491,260 + OHPLBJKB_00477 0.18 +0.5 491,261 - OHPLBJKB_00477 0.19 -0.4 491,272 + OHPLBJKB_00477 0.20 +0.2 491,272 + OHPLBJKB_00477 0.20 +1.2 491,272 + OHPLBJKB_00477 0.20 +0.4 491,273 - OHPLBJKB_00477 0.20 -0.6 491,273 - OHPLBJKB_00477 0.20 +0.8 491,273 - OHPLBJKB_00477 0.20 +0.2 491,273 - OHPLBJKB_00477 0.20 +0.1 491,278 + OHPLBJKB_00477 0.20 -0.9 491,278 + OHPLBJKB_00477 0.20 -0.1 491,278 + OHPLBJKB_00477 0.20 +0.4 491,278 + OHPLBJKB_00477 0.20 -0.0 491,278 + OHPLBJKB_00477 0.20 -0.8 491,278 + OHPLBJKB_00477 0.20 +0.2 491,279 - OHPLBJKB_00477 0.20 -1.9 491,279 - OHPLBJKB_00477 0.20 +0.4 491,279 - OHPLBJKB_00477 0.20 +0.1 491,279 - OHPLBJKB_00477 0.20 +0.1 491,279 - OHPLBJKB_00477 0.20 +0.2 491,319 + OHPLBJKB_00477 0.24 -0.6 491,380 - OHPLBJKB_00477 0.31 +0.4 491,380 - OHPLBJKB_00477 0.31 -1.1 491,456 - OHPLBJKB_00477 0.38 -0.4 491,470 + OHPLBJKB_00477 0.40 -0.4 491,470 + OHPLBJKB_00477 0.40 -0.3 491,494 + OHPLBJKB_00477 0.42 +0.4
Or see this region's nucleotide sequence