Experiment: N4 MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00216 and OHPLBJKB_00217 are separated by 164 nucleotides OHPLBJKB_00217 and OHPLBJKB_00218 are separated by 99 nucleotides OHPLBJKB_00218 and OHPLBJKB_00219 are separated by 245 nucleotides OHPLBJKB_00219 and OHPLBJKB_00220 are separated by 104 nucleotides
OHPLBJKB_00216: OHPLBJKB_00216 - Inner membrane transport permease YhhJ, at 237,829 to 238,953
_00216
OHPLBJKB_00217: OHPLBJKB_00217 - ISAs1 family transposase ISEc1, at 239,118 to 239,975
_00217
OHPLBJKB_00218: OHPLBJKB_00218 - ISAs1 family transposase ISEc1, at 240,075 to 240,254
_00218
OHPLBJKB_00219: OHPLBJKB_00219 - Protein YibA, at 240,500 to 240,745
_00219
OHPLBJKB_00220: OHPLBJKB_00220 - putative protein YbbC, at 240,850 to 241,116
_00220
Position (kb) 239
240 Strain fitness (log2 ratio) -1
0
1 at 238.218 kb on + strand, within OHPLBJKB_00216 at 238.231 kb on + strand, within OHPLBJKB_00216 at 238.231 kb on + strand, within OHPLBJKB_00216 at 238.231 kb on + strand, within OHPLBJKB_00216 at 238.232 kb on - strand, within OHPLBJKB_00216 at 238.232 kb on - strand, within OHPLBJKB_00216 at 238.234 kb on - strand, within OHPLBJKB_00216 at 238.242 kb on + strand, within OHPLBJKB_00216 at 238.387 kb on - strand, within OHPLBJKB_00216 at 238.387 kb on - strand, within OHPLBJKB_00216 at 238.403 kb on + strand, within OHPLBJKB_00216 at 238.404 kb on - strand, within OHPLBJKB_00216 at 238.404 kb on - strand, within OHPLBJKB_00216 at 238.404 kb on - strand, within OHPLBJKB_00216 at 238.457 kb on + strand, within OHPLBJKB_00216 at 238.457 kb on + strand, within OHPLBJKB_00216 at 238.568 kb on + strand, within OHPLBJKB_00216 at 238.568 kb on + strand, within OHPLBJKB_00216 at 238.569 kb on - strand, within OHPLBJKB_00216 at 238.605 kb on + strand, within OHPLBJKB_00216 at 238.759 kb on - strand, within OHPLBJKB_00216 at 238.782 kb on + strand, within OHPLBJKB_00216 at 238.783 kb on - strand, within OHPLBJKB_00216 at 238.783 kb on - strand, within OHPLBJKB_00216 at 238.834 kb on + strand, within OHPLBJKB_00216 at 238.955 kb on + strand at 238.955 kb on + strand at 238.956 kb on - strand at 238.956 kb on - strand at 238.956 kb on - strand at 238.956 kb on - strand at 238.972 kb on + strand at 238.979 kb on - strand at 238.981 kb on - strand at 239.042 kb on + strand at 239.043 kb on - strand at 239.155 kb on + strand at 239.155 kb on + strand at 239.156 kb on - strand at 239.156 kb on - strand at 239.156 kb on - strand at 239.208 kb on + strand, within OHPLBJKB_00217 at 239.208 kb on + strand, within OHPLBJKB_00217 at 239.234 kb on + strand, within OHPLBJKB_00217 at 239.847 kb on - strand, within OHPLBJKB_00217 at 240.806 kb on + strand at 240.843 kb on + strand at 240.844 kb on - strand at 240.847 kb on + strand at 240.847 kb on + strand at 240.847 kb on + strand at 240.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction N4 MOI10 remove 238,218 + OHPLBJKB_00216 0.35 -0.3 238,231 + OHPLBJKB_00216 0.36 +0.3 238,231 + OHPLBJKB_00216 0.36 -0.1 238,231 + OHPLBJKB_00216 0.36 -0.8 238,232 - OHPLBJKB_00216 0.36 -0.2 238,232 - OHPLBJKB_00216 0.36 -0.1 238,234 - OHPLBJKB_00216 0.36 -0.2 238,242 + OHPLBJKB_00216 0.37 +0.6 238,387 - OHPLBJKB_00216 0.50 -0.6 238,387 - OHPLBJKB_00216 0.50 -0.6 238,403 + OHPLBJKB_00216 0.51 +0.2 238,404 - OHPLBJKB_00216 0.51 -0.1 238,404 - OHPLBJKB_00216 0.51 +0.0 238,404 - OHPLBJKB_00216 0.51 +0.2 238,457 + OHPLBJKB_00216 0.56 -0.5 238,457 + OHPLBJKB_00216 0.56 -0.6 238,568 + OHPLBJKB_00216 0.66 -0.0 238,568 + OHPLBJKB_00216 0.66 -0.6 238,569 - OHPLBJKB_00216 0.66 -0.0 238,605 + OHPLBJKB_00216 0.69 -0.7 238,759 - OHPLBJKB_00216 0.83 +0.9 238,782 + OHPLBJKB_00216 0.85 -0.4 238,783 - OHPLBJKB_00216 0.85 -0.1 238,783 - OHPLBJKB_00216 0.85 -1.6 238,834 + OHPLBJKB_00216 0.89 +0.9 238,955 + +0.3 238,955 + +0.2 238,956 - -0.4 238,956 - +0.3 238,956 - -0.1 238,956 - -0.1 238,972 + +0.4 238,979 - -0.4 238,981 - +0.5 239,042 + +0.2 239,043 - -1.7 239,155 + +1.1 239,155 + +0.2 239,156 - -1.2 239,156 - +0.6 239,156 - +0.2 239,208 + OHPLBJKB_00217 0.10 -0.7 239,208 + OHPLBJKB_00217 0.10 +0.5 239,234 + OHPLBJKB_00217 0.14 -0.6 239,847 - OHPLBJKB_00217 0.85 -0.7 240,806 + +0.3 240,843 + -0.0 240,844 - +0.2 240,847 + -0.8 240,847 + -0.1 240,847 + -0.6 240,848 - -1.2
Or see this region's nucleotide sequence