Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00075

Experiment: N4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00074 and OHPLBJKB_00075 are separated by 9 nucleotidesOHPLBJKB_00075 and OHPLBJKB_00076 are separated by 25 nucleotides OHPLBJKB_00074: OHPLBJKB_00074 - hypothetical protein, at 77,211 to 78,206 _00074 OHPLBJKB_00075: OHPLBJKB_00075 - Lipopolysaccharide core heptose(II) kinase RfaY, at 78,216 to 78,908 _00075 OHPLBJKB_00076: OHPLBJKB_00076 - General stress protein A, at 78,934 to 79,959 _00076 Position (kb) 78 79Strain fitness (log2 ratio) -1 0 1at 77.278 kb on + strandat 77.458 kb on + strand, within OHPLBJKB_00074at 77.523 kb on + strand, within OHPLBJKB_00074at 77.748 kb on + strand, within OHPLBJKB_00074at 77.794 kb on + strand, within OHPLBJKB_00074at 77.838 kb on + strand, within OHPLBJKB_00074at 77.838 kb on + strand, within OHPLBJKB_00074at 77.882 kb on + strand, within OHPLBJKB_00074at 78.008 kb on + strand, within OHPLBJKB_00074at 78.008 kb on + strand, within OHPLBJKB_00074at 78.221 kb on + strandat 78.230 kb on - strandat 78.680 kb on + strand, within OHPLBJKB_00075at 78.680 kb on + strand, within OHPLBJKB_00075at 78.681 kb on - strand, within OHPLBJKB_00075at 78.681 kb on - strand, within OHPLBJKB_00075at 78.907 kb on - strandat 78.907 kb on - strandat 78.941 kb on + strandat 79.009 kb on - strandat 79.015 kb on + strandat 79.056 kb on + strand, within OHPLBJKB_00076at 79.056 kb on + strand, within OHPLBJKB_00076at 79.307 kb on - strand, within OHPLBJKB_00076at 79.329 kb on + strand, within OHPLBJKB_00076at 79.389 kb on + strand, within OHPLBJKB_00076at 79.407 kb on + strand, within OHPLBJKB_00076at 79.478 kb on + strand, within OHPLBJKB_00076at 79.479 kb on - strand, within OHPLBJKB_00076at 79.533 kb on + strand, within OHPLBJKB_00076at 79.565 kb on - strand, within OHPLBJKB_00076at 79.795 kb on + strand, within OHPLBJKB_00076at 79.864 kb on + strandat 79.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N4 MOI10
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77,278 + +1.5
77,458 + OHPLBJKB_00074 0.25 +0.2
77,523 + OHPLBJKB_00074 0.31 -0.2
77,748 + OHPLBJKB_00074 0.54 +1.7
77,794 + OHPLBJKB_00074 0.59 +1.6
77,838 + OHPLBJKB_00074 0.63 +0.9
77,838 + OHPLBJKB_00074 0.63 -0.7
77,882 + OHPLBJKB_00074 0.67 +0.9
78,008 + OHPLBJKB_00074 0.80 -0.7
78,008 + OHPLBJKB_00074 0.80 +1.5
78,221 + +0.6
78,230 - +0.3
78,680 + OHPLBJKB_00075 0.67 -1.3
78,680 + OHPLBJKB_00075 0.67 -0.2
78,681 - OHPLBJKB_00075 0.67 -0.5
78,681 - OHPLBJKB_00075 0.67 -0.1
78,907 - +0.6
78,907 - +0.4
78,941 + +0.4
79,009 - +0.8
79,015 + -0.3
79,056 + OHPLBJKB_00076 0.12 +0.5
79,056 + OHPLBJKB_00076 0.12 +0.0
79,307 - OHPLBJKB_00076 0.36 +1.1
79,329 + OHPLBJKB_00076 0.38 +0.2
79,389 + OHPLBJKB_00076 0.44 -0.4
79,407 + OHPLBJKB_00076 0.46 +0.0
79,478 + OHPLBJKB_00076 0.53 +0.5
79,479 - OHPLBJKB_00076 0.53 +1.1
79,533 + OHPLBJKB_00076 0.58 +1.0
79,565 - OHPLBJKB_00076 0.62 -1.4
79,795 + OHPLBJKB_00076 0.84 +0.2
79,864 + +0.6
79,865 - +0.5

Or see this region's nucleotide sequence