Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05118

Experiment: Glycogen from bovine liver 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05116 and BACOVA_05117 are separated by 26 nucleotidesBACOVA_05117 and BACOVA_05118 are separated by 25 nucleotidesBACOVA_05118 and BACOVA_05119 are separated by 38 nucleotides BACOVA_05116: BACOVA_05116 - GumN protein, at 589,272 to 590,156 _05116 BACOVA_05117: BACOVA_05117 - NlpC/P60 family protein, at 590,183 to 590,806 _05117 BACOVA_05118: BACOVA_05118 - ABC transporter, ATP-binding protein, at 590,832 to 591,539 _05118 BACOVA_05119: BACOVA_05119 - hypothetical protein, at 591,578 to 593,071 _05119 Position (kb) 590 591 592Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 589.963 kb on + strand, within BACOVA_05116at 589.965 kb on + strand, within BACOVA_05116at 589.965 kb on + strand, within BACOVA_05116at 589.965 kb on + strand, within BACOVA_05116at 589.966 kb on - strand, within BACOVA_05116at 589.986 kb on - strand, within BACOVA_05116at 589.995 kb on - strand, within BACOVA_05116at 590.053 kb on + strand, within BACOVA_05116at 590.091 kb on + strandat 590.170 kb on + strandat 590.170 kb on + strandat 590.180 kb on + strandat 590.180 kb on + strandat 590.181 kb on - strandat 590.181 kb on - strandat 590.189 kb on + strandat 590.224 kb on - strandat 590.303 kb on + strand, within BACOVA_05117at 590.304 kb on - strand, within BACOVA_05117at 590.313 kb on - strand, within BACOVA_05117at 590.345 kb on + strand, within BACOVA_05117at 590.345 kb on + strand, within BACOVA_05117at 590.386 kb on + strand, within BACOVA_05117at 590.433 kb on + strand, within BACOVA_05117at 590.435 kb on + strand, within BACOVA_05117at 590.441 kb on - strand, within BACOVA_05117at 590.446 kb on - strand, within BACOVA_05117at 590.459 kb on + strand, within BACOVA_05117at 590.546 kb on - strand, within BACOVA_05117at 590.582 kb on + strand, within BACOVA_05117at 590.584 kb on + strand, within BACOVA_05117at 590.584 kb on + strand, within BACOVA_05117at 590.585 kb on - strand, within BACOVA_05117at 590.607 kb on + strand, within BACOVA_05117at 590.642 kb on - strand, within BACOVA_05117at 590.660 kb on + strand, within BACOVA_05117at 590.661 kb on - strand, within BACOVA_05117at 590.686 kb on - strand, within BACOVA_05117at 590.716 kb on + strand, within BACOVA_05117at 590.716 kb on + strand, within BACOVA_05117at 590.717 kb on - strand, within BACOVA_05117at 590.723 kb on - strand, within BACOVA_05117at 590.745 kb on - strandat 590.745 kb on - strandat 590.747 kb on - strandat 590.748 kb on + strandat 590.749 kb on - strandat 590.749 kb on - strandat 590.749 kb on - strandat 590.758 kb on + strandat 590.762 kb on + strandat 590.807 kb on + strandat 590.812 kb on + strandat 590.813 kb on - strandat 590.844 kb on + strandat 590.850 kb on - strandat 590.855 kb on - strandat 590.897 kb on + strandat 590.944 kb on - strand, within BACOVA_05118at 590.949 kb on + strand, within BACOVA_05118at 590.950 kb on - strand, within BACOVA_05118at 590.955 kb on - strand, within BACOVA_05118at 590.976 kb on + strand, within BACOVA_05118at 590.978 kb on + strand, within BACOVA_05118at 590.982 kb on - strand, within BACOVA_05118at 591.006 kb on - strand, within BACOVA_05118at 591.032 kb on + strand, within BACOVA_05118at 591.032 kb on + strand, within BACOVA_05118at 591.033 kb on - strand, within BACOVA_05118at 591.081 kb on + strand, within BACOVA_05118at 591.081 kb on + strand, within BACOVA_05118at 591.128 kb on + strand, within BACOVA_05118at 591.129 kb on - strand, within BACOVA_05118at 591.131 kb on + strand, within BACOVA_05118at 591.131 kb on + strand, within BACOVA_05118at 591.142 kb on + strand, within BACOVA_05118at 591.142 kb on + strand, within BACOVA_05118at 591.153 kb on + strand, within BACOVA_05118at 591.186 kb on - strand, within BACOVA_05118at 591.239 kb on - strand, within BACOVA_05118at 591.262 kb on + strand, within BACOVA_05118at 591.262 kb on + strand, within BACOVA_05118at 591.280 kb on + strand, within BACOVA_05118at 591.281 kb on - strand, within BACOVA_05118at 591.354 kb on - strand, within BACOVA_05118at 591.362 kb on + strand, within BACOVA_05118at 591.371 kb on + strand, within BACOVA_05118at 591.372 kb on - strand, within BACOVA_05118at 591.388 kb on - strand, within BACOVA_05118at 591.483 kb on + strandat 591.553 kb on + strandat 591.556 kb on - strandat 591.642 kb on - strandat 591.701 kb on + strandat 591.706 kb on - strandat 591.735 kb on - strand, within BACOVA_05119at 591.779 kb on - strand, within BACOVA_05119at 591.791 kb on + strand, within BACOVA_05119at 591.793 kb on + strand, within BACOVA_05119at 591.852 kb on + strand, within BACOVA_05119at 591.853 kb on - strand, within BACOVA_05119at 591.884 kb on - strand, within BACOVA_05119at 591.934 kb on + strand, within BACOVA_05119at 591.935 kb on - strand, within BACOVA_05119at 591.935 kb on - strand, within BACOVA_05119at 591.971 kb on + strand, within BACOVA_05119at 591.990 kb on + strand, within BACOVA_05119at 591.991 kb on - strand, within BACOVA_05119at 591.999 kb on + strand, within BACOVA_05119at 592.021 kb on + strand, within BACOVA_05119at 592.021 kb on + strand, within BACOVA_05119at 592.022 kb on - strand, within BACOVA_05119at 592.056 kb on + strand, within BACOVA_05119at 592.056 kb on + strand, within BACOVA_05119at 592.075 kb on + strand, within BACOVA_05119at 592.075 kb on + strand, within BACOVA_05119at 592.117 kb on - strand, within BACOVA_05119at 592.117 kb on - strand, within BACOVA_05119at 592.187 kb on + strand, within BACOVA_05119at 592.194 kb on - strand, within BACOVA_05119at 592.239 kb on - strand, within BACOVA_05119at 592.264 kb on + strand, within BACOVA_05119at 592.300 kb on + strand, within BACOVA_05119at 592.318 kb on + strand, within BACOVA_05119at 592.319 kb on - strand, within BACOVA_05119at 592.328 kb on - strand, within BACOVA_05119at 592.353 kb on + strand, within BACOVA_05119at 592.358 kb on - strand, within BACOVA_05119at 592.442 kb on + strand, within BACOVA_05119at 592.442 kb on + strand, within BACOVA_05119at 592.444 kb on + strand, within BACOVA_05119at 592.445 kb on - strand, within BACOVA_05119at 592.473 kb on + strand, within BACOVA_05119at 592.474 kb on - strand, within BACOVA_05119at 592.487 kb on - strand, within BACOVA_05119at 592.535 kb on - strand, within BACOVA_05119at 592.535 kb on - strand, within BACOVA_05119

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C)
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589,963 + BACOVA_05116 0.78 -2.1
589,965 + BACOVA_05116 0.78 +1.5
589,965 + BACOVA_05116 0.78 +0.5
589,965 + BACOVA_05116 0.78 -0.2
589,966 - BACOVA_05116 0.78 -3.0
589,986 - BACOVA_05116 0.81 -0.1
589,995 - BACOVA_05116 0.82 -0.3
590,053 + BACOVA_05116 0.88 -1.1
590,091 + -1.1
590,170 + -0.5
590,170 + +0.9
590,180 + +0.2
590,180 + -0.3
590,181 - +0.6
590,181 - -0.7
590,189 + +0.3
590,224 - +1.1
590,303 + BACOVA_05117 0.19 -0.5
590,304 - BACOVA_05117 0.19 -0.8
590,313 - BACOVA_05117 0.21 -0.1
590,345 + BACOVA_05117 0.26 -0.7
590,345 + BACOVA_05117 0.26 -2.9
590,386 + BACOVA_05117 0.33 -0.5
590,433 + BACOVA_05117 0.40 +0.3
590,435 + BACOVA_05117 0.40 +1.1
590,441 - BACOVA_05117 0.41 -0.4
590,446 - BACOVA_05117 0.42 +0.3
590,459 + BACOVA_05117 0.44 -0.6
590,546 - BACOVA_05117 0.58 -1.1
590,582 + BACOVA_05117 0.64 +0.9
590,584 + BACOVA_05117 0.64 +1.7
590,584 + BACOVA_05117 0.64 +0.9
590,585 - BACOVA_05117 0.64 -2.2
590,607 + BACOVA_05117 0.68 -1.3
590,642 - BACOVA_05117 0.74 -0.1
590,660 + BACOVA_05117 0.76 +0.0
590,661 - BACOVA_05117 0.77 -0.4
590,686 - BACOVA_05117 0.81 +0.3
590,716 + BACOVA_05117 0.85 +0.8
590,716 + BACOVA_05117 0.85 +0.2
590,717 - BACOVA_05117 0.86 +0.5
590,723 - BACOVA_05117 0.87 -1.1
590,745 - +0.7
590,745 - -0.8
590,747 - +0.8
590,748 + +0.3
590,749 - -1.2
590,749 - -0.0
590,749 - +0.3
590,758 + -0.3
590,762 + +0.3
590,807 + -0.2
590,812 + -0.3
590,813 - -1.1
590,844 + -1.0
590,850 - +0.1
590,855 - -2.6
590,897 + -3.7
590,944 - BACOVA_05118 0.16 -2.0
590,949 + BACOVA_05118 0.17 -2.7
590,950 - BACOVA_05118 0.17 -1.5
590,955 - BACOVA_05118 0.17 -0.9
590,976 + BACOVA_05118 0.20 -1.1
590,978 + BACOVA_05118 0.21 -1.2
590,982 - BACOVA_05118 0.21 -0.1
591,006 - BACOVA_05118 0.25 -3.2
591,032 + BACOVA_05118 0.28 -3.8
591,032 + BACOVA_05118 0.28 -2.4
591,033 - BACOVA_05118 0.28 -0.8
591,081 + BACOVA_05118 0.35 +0.9
591,081 + BACOVA_05118 0.35 -1.6
591,128 + BACOVA_05118 0.42 -2.5
591,129 - BACOVA_05118 0.42 -0.5
591,131 + BACOVA_05118 0.42 -2.8
591,131 + BACOVA_05118 0.42 -0.8
591,142 + BACOVA_05118 0.44 -1.1
591,142 + BACOVA_05118 0.44 -2.8
591,153 + BACOVA_05118 0.45 -1.3
591,186 - BACOVA_05118 0.50 -2.7
591,239 - BACOVA_05118 0.57 -2.5
591,262 + BACOVA_05118 0.61 -1.3
591,262 + BACOVA_05118 0.61 +0.4
591,280 + BACOVA_05118 0.63 -1.8
591,281 - BACOVA_05118 0.63 -1.4
591,354 - BACOVA_05118 0.74 -2.2
591,362 + BACOVA_05118 0.75 -3.6
591,371 + BACOVA_05118 0.76 -2.3
591,372 - BACOVA_05118 0.76 -2.0
591,388 - BACOVA_05118 0.79 -3.0
591,483 + -4.0
591,553 + -0.8
591,556 - -2.2
591,642 - -2.2
591,701 + -2.4
591,706 - -0.6
591,735 - BACOVA_05119 0.11 -2.4
591,779 - BACOVA_05119 0.13 -2.2
591,791 + BACOVA_05119 0.14 -2.1
591,793 + BACOVA_05119 0.14 -2.0
591,852 + BACOVA_05119 0.18 -3.0
591,853 - BACOVA_05119 0.18 -3.0
591,884 - BACOVA_05119 0.20 -2.9
591,934 + BACOVA_05119 0.24 -0.6
591,935 - BACOVA_05119 0.24 -2.3
591,935 - BACOVA_05119 0.24 -2.8
591,971 + BACOVA_05119 0.26 -1.2
591,990 + BACOVA_05119 0.28 -0.8
591,991 - BACOVA_05119 0.28 -1.9
591,999 + BACOVA_05119 0.28 -2.5
592,021 + BACOVA_05119 0.30 -1.4
592,021 + BACOVA_05119 0.30 -1.5
592,022 - BACOVA_05119 0.30 -0.1
592,056 + BACOVA_05119 0.32 -2.2
592,056 + BACOVA_05119 0.32 -2.5
592,075 + BACOVA_05119 0.33 -1.5
592,075 + BACOVA_05119 0.33 -3.0
592,117 - BACOVA_05119 0.36 -3.3
592,117 - BACOVA_05119 0.36 -3.0
592,187 + BACOVA_05119 0.41 -1.4
592,194 - BACOVA_05119 0.41 -0.4
592,239 - BACOVA_05119 0.44 -2.3
592,264 + BACOVA_05119 0.46 +0.1
592,300 + BACOVA_05119 0.48 -0.1
592,318 + BACOVA_05119 0.50 -2.3
592,319 - BACOVA_05119 0.50 -3.5
592,328 - BACOVA_05119 0.50 -1.4
592,353 + BACOVA_05119 0.52 -2.7
592,358 - BACOVA_05119 0.52 -2.1
592,442 + BACOVA_05119 0.58 -3.0
592,442 + BACOVA_05119 0.58 -1.4
592,444 + BACOVA_05119 0.58 -0.1
592,445 - BACOVA_05119 0.58 -0.6
592,473 + BACOVA_05119 0.60 -1.1
592,474 - BACOVA_05119 0.60 -2.2
592,487 - BACOVA_05119 0.61 -2.3
592,535 - BACOVA_05119 0.64 -0.4
592,535 - BACOVA_05119 0.64 -2.5

Or see this region's nucleotide sequence