Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04405 and BACOVA_04406 overlap by 4 nucleotides BACOVA_04406 and BACOVA_04407 are separated by 150 nucleotides BACOVA_04407 and BACOVA_04408 are separated by 73 nucleotides
BACOVA_04405: BACOVA_04405 - hypothetical protein, at 318,531 to 320,720
_04405
BACOVA_04406: BACOVA_04406 - hypothetical protein, at 320,717 to 322,924
_04406
BACOVA_04407: BACOVA_04407 - hypothetical protein, at 323,075 to 323,515
_04407
BACOVA_04408: BACOVA_04408 - hypothetical protein, at 323,589 to 323,933
_04408
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 319.732 kb on + strand, within BACOVA_04405 at 319.732 kb on + strand, within BACOVA_04405 at 319.733 kb on - strand, within BACOVA_04405 at 319.733 kb on - strand, within BACOVA_04405 at 319.782 kb on - strand, within BACOVA_04405 at 319.785 kb on - strand, within BACOVA_04405 at 319.901 kb on - strand, within BACOVA_04405 at 319.918 kb on + strand, within BACOVA_04405 at 319.920 kb on + strand, within BACOVA_04405 at 319.994 kb on - strand, within BACOVA_04405 at 320.019 kb on + strand, within BACOVA_04405 at 320.020 kb on - strand, within BACOVA_04405 at 320.020 kb on - strand, within BACOVA_04405 at 320.113 kb on - strand, within BACOVA_04405 at 320.180 kb on + strand, within BACOVA_04405 at 320.208 kb on + strand, within BACOVA_04405 at 320.362 kb on - strand, within BACOVA_04405 at 320.389 kb on + strand, within BACOVA_04405 at 320.390 kb on - strand, within BACOVA_04405 at 320.487 kb on + strand, within BACOVA_04405 at 320.536 kb on + strand at 320.537 kb on - strand at 320.563 kb on - strand at 320.601 kb on - strand at 320.601 kb on - strand at 320.612 kb on - strand at 320.668 kb on + strand at 320.669 kb on - strand at 320.685 kb on - strand at 320.694 kb on - strand at 320.713 kb on + strand at 320.735 kb on - strand at 320.876 kb on + strand at 320.876 kb on + strand at 320.924 kb on + strand at 320.985 kb on + strand, within BACOVA_04406 at 321.014 kb on + strand, within BACOVA_04406 at 321.014 kb on + strand, within BACOVA_04406 at 321.025 kb on + strand, within BACOVA_04406 at 321.092 kb on + strand, within BACOVA_04406 at 321.249 kb on + strand, within BACOVA_04406 at 321.270 kb on + strand, within BACOVA_04406 at 321.270 kb on + strand, within BACOVA_04406 at 321.270 kb on + strand, within BACOVA_04406 at 321.270 kb on + strand, within BACOVA_04406 at 321.271 kb on - strand, within BACOVA_04406 at 321.395 kb on + strand, within BACOVA_04406 at 321.499 kb on + strand, within BACOVA_04406 at 321.499 kb on + strand, within BACOVA_04406 at 321.506 kb on - strand, within BACOVA_04406 at 321.570 kb on - strand, within BACOVA_04406 at 321.570 kb on - strand, within BACOVA_04406 at 321.653 kb on + strand, within BACOVA_04406 at 321.695 kb on + strand, within BACOVA_04406 at 321.695 kb on + strand, within BACOVA_04406 at 321.725 kb on - strand, within BACOVA_04406 at 321.725 kb on - strand, within BACOVA_04406 at 321.842 kb on - strand, within BACOVA_04406 at 321.888 kb on - strand, within BACOVA_04406 at 321.907 kb on + strand, within BACOVA_04406 at 321.945 kb on - strand, within BACOVA_04406 at 322.106 kb on + strand, within BACOVA_04406 at 322.106 kb on + strand, within BACOVA_04406 at 322.106 kb on + strand, within BACOVA_04406 at 322.106 kb on + strand, within BACOVA_04406 at 322.108 kb on + strand, within BACOVA_04406 at 322.130 kb on + strand, within BACOVA_04406 at 322.131 kb on - strand, within BACOVA_04406 at 322.133 kb on + strand, within BACOVA_04406 at 322.134 kb on - strand, within BACOVA_04406 at 322.146 kb on + strand, within BACOVA_04406 at 322.216 kb on + strand, within BACOVA_04406 at 322.218 kb on + strand, within BACOVA_04406 at 322.230 kb on - strand, within BACOVA_04406 at 322.230 kb on - strand, within BACOVA_04406 at 322.230 kb on - strand, within BACOVA_04406 at 322.249 kb on + strand, within BACOVA_04406 at 322.250 kb on - strand, within BACOVA_04406 at 322.261 kb on + strand, within BACOVA_04406 at 322.285 kb on - strand, within BACOVA_04406 at 322.325 kb on + strand, within BACOVA_04406 at 322.326 kb on - strand, within BACOVA_04406 at 322.356 kb on - strand, within BACOVA_04406 at 322.389 kb on - strand, within BACOVA_04406 at 322.389 kb on - strand, within BACOVA_04406 at 322.413 kb on - strand, within BACOVA_04406 at 322.421 kb on + strand, within BACOVA_04406 at 322.433 kb on + strand, within BACOVA_04406 at 322.433 kb on + strand, within BACOVA_04406 at 322.491 kb on - strand, within BACOVA_04406 at 322.491 kb on - strand, within BACOVA_04406 at 322.538 kb on + strand, within BACOVA_04406 at 322.538 kb on + strand, within BACOVA_04406 at 322.538 kb on + strand, within BACOVA_04406 at 322.538 kb on + strand, within BACOVA_04406 at 322.539 kb on - strand, within BACOVA_04406 at 322.539 kb on - strand, within BACOVA_04406 at 322.539 kb on - strand, within BACOVA_04406 at 322.539 kb on - strand, within BACOVA_04406 at 322.549 kb on + strand, within BACOVA_04406 at 322.586 kb on + strand, within BACOVA_04406 at 322.658 kb on + strand, within BACOVA_04406 at 322.658 kb on + strand, within BACOVA_04406 at 322.658 kb on + strand, within BACOVA_04406 at 322.658 kb on + strand, within BACOVA_04406 at 322.659 kb on - strand, within BACOVA_04406 at 322.708 kb on + strand at 322.708 kb on + strand at 322.780 kb on + strand at 322.781 kb on - strand at 322.795 kb on + strand at 322.795 kb on + strand at 322.795 kb on + strand at 322.796 kb on - strand at 322.815 kb on + strand at 322.815 kb on + strand at 322.845 kb on + strand at 322.856 kb on + strand at 322.899 kb on + strand at 322.899 kb on + strand at 322.900 kb on - strand at 322.927 kb on + strand at 322.927 kb on + strand at 322.928 kb on - strand at 322.928 kb on - strand at 322.937 kb on + strand at 322.951 kb on - strand at 323.028 kb on - strand at 323.069 kb on - strand at 323.095 kb on + strand at 323.095 kb on + strand at 323.096 kb on - strand at 323.096 kb on - strand at 323.105 kb on + strand at 323.106 kb on - strand at 323.106 kb on - strand at 323.107 kb on + strand at 323.107 kb on + strand at 323.108 kb on - strand at 323.108 kb on - strand at 323.108 kb on - strand at 323.108 kb on - strand at 323.108 kb on - strand at 323.109 kb on + strand at 323.110 kb on - strand at 323.195 kb on + strand, within BACOVA_04407 at 323.196 kb on - strand, within BACOVA_04407 at 323.254 kb on - strand, within BACOVA_04407 at 323.288 kb on - strand, within BACOVA_04407 at 323.335 kb on - strand, within BACOVA_04407 at 323.365 kb on - strand, within BACOVA_04407 at 323.365 kb on - strand, within BACOVA_04407 at 323.472 kb on + strand at 323.488 kb on + strand at 323.512 kb on - strand at 323.514 kb on - strand at 323.537 kb on + strand at 323.538 kb on - strand at 323.538 kb on - strand at 323.630 kb on + strand, within BACOVA_04408 at 323.679 kb on + strand, within BACOVA_04408 at 323.680 kb on - strand, within BACOVA_04408 at 323.680 kb on - strand, within BACOVA_04408 at 323.680 kb on - strand, within BACOVA_04408 at 323.828 kb on + strand, within BACOVA_04408 at 323.828 kb on + strand, within BACOVA_04408 at 323.829 kb on - strand, within BACOVA_04408 at 323.830 kb on + strand, within BACOVA_04408 at 323.831 kb on - strand, within BACOVA_04408 at 323.839 kb on - strand, within BACOVA_04408 at 323.893 kb on - strand, within BACOVA_04408 at 323.893 kb on - strand, within BACOVA_04408 at 323.893 kb on - strand, within BACOVA_04408 at 323.895 kb on + strand, within BACOVA_04408 at 323.895 kb on + strand, within BACOVA_04408 at 323.896 kb on - strand, within BACOVA_04408
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 319,732 + BACOVA_04405 0.55 -0.2 319,732 + BACOVA_04405 0.55 -0.1 319,733 - BACOVA_04405 0.55 -0.0 319,733 - BACOVA_04405 0.55 -0.1 319,782 - BACOVA_04405 0.57 +0.4 319,785 - BACOVA_04405 0.57 +1.0 319,901 - BACOVA_04405 0.63 -0.8 319,918 + BACOVA_04405 0.63 -0.6 319,920 + BACOVA_04405 0.63 -1.1 319,994 - BACOVA_04405 0.67 +0.2 320,019 + BACOVA_04405 0.68 -0.0 320,020 - BACOVA_04405 0.68 +0.3 320,020 - BACOVA_04405 0.68 -0.3 320,113 - BACOVA_04405 0.72 +0.2 320,180 + BACOVA_04405 0.75 +0.8 320,208 + BACOVA_04405 0.77 -0.1 320,362 - BACOVA_04405 0.84 -0.6 320,389 + BACOVA_04405 0.85 -0.4 320,390 - BACOVA_04405 0.85 -1.8 320,487 + BACOVA_04405 0.89 -1.2 320,536 + -0.3 320,537 - +1.5 320,563 - +0.0 320,601 - +0.4 320,601 - +0.4 320,612 - -0.0 320,668 + -0.9 320,669 - -0.8 320,685 - -0.0 320,694 - -0.2 320,713 + -1.0 320,735 - -0.0 320,876 + +0.7 320,876 + -0.2 320,924 + +0.6 320,985 + BACOVA_04406 0.12 -0.5 321,014 + BACOVA_04406 0.13 +0.2 321,014 + BACOVA_04406 0.13 -0.0 321,025 + BACOVA_04406 0.14 -0.3 321,092 + BACOVA_04406 0.17 -0.3 321,249 + BACOVA_04406 0.24 -1.1 321,270 + BACOVA_04406 0.25 +0.2 321,270 + BACOVA_04406 0.25 -1.3 321,270 + BACOVA_04406 0.25 +1.0 321,270 + BACOVA_04406 0.25 +0.2 321,271 - BACOVA_04406 0.25 +0.4 321,395 + BACOVA_04406 0.31 -0.5 321,499 + BACOVA_04406 0.35 -0.7 321,499 + BACOVA_04406 0.35 +1.0 321,506 - BACOVA_04406 0.36 +0.9 321,570 - BACOVA_04406 0.39 -1.3 321,570 - BACOVA_04406 0.39 +0.1 321,653 + BACOVA_04406 0.42 -0.0 321,695 + BACOVA_04406 0.44 -0.7 321,695 + BACOVA_04406 0.44 -0.9 321,725 - BACOVA_04406 0.46 +1.9 321,725 - BACOVA_04406 0.46 -1.2 321,842 - BACOVA_04406 0.51 +0.7 321,888 - BACOVA_04406 0.53 -0.9 321,907 + BACOVA_04406 0.54 +0.1 321,945 - BACOVA_04406 0.56 -1.1 322,106 + BACOVA_04406 0.63 +0.2 322,106 + BACOVA_04406 0.63 +0.6 322,106 + BACOVA_04406 0.63 -0.8 322,106 + BACOVA_04406 0.63 +0.1 322,108 + BACOVA_04406 0.63 -0.2 322,130 + BACOVA_04406 0.64 +0.4 322,131 - BACOVA_04406 0.64 +0.9 322,133 + BACOVA_04406 0.64 +0.1 322,134 - BACOVA_04406 0.64 -0.3 322,146 + BACOVA_04406 0.65 -1.4 322,216 + BACOVA_04406 0.68 -1.6 322,218 + BACOVA_04406 0.68 +0.3 322,230 - BACOVA_04406 0.69 +0.6 322,230 - BACOVA_04406 0.69 -0.7 322,230 - BACOVA_04406 0.69 +0.5 322,249 + BACOVA_04406 0.69 +0.1 322,250 - BACOVA_04406 0.69 -0.4 322,261 + BACOVA_04406 0.70 -0.6 322,285 - BACOVA_04406 0.71 -0.8 322,325 + BACOVA_04406 0.73 -1.4 322,326 - BACOVA_04406 0.73 +0.5 322,356 - BACOVA_04406 0.74 -0.3 322,389 - BACOVA_04406 0.76 +1.2 322,389 - BACOVA_04406 0.76 +1.0 322,413 - BACOVA_04406 0.77 -1.2 322,421 + BACOVA_04406 0.77 -0.7 322,433 + BACOVA_04406 0.78 -1.1 322,433 + BACOVA_04406 0.78 -1.1 322,491 - BACOVA_04406 0.80 +0.3 322,491 - BACOVA_04406 0.80 -0.2 322,538 + BACOVA_04406 0.82 +0.4 322,538 + BACOVA_04406 0.82 -0.2 322,538 + BACOVA_04406 0.82 -0.7 322,538 + BACOVA_04406 0.82 +0.9 322,539 - BACOVA_04406 0.83 -0.1 322,539 - BACOVA_04406 0.83 -0.1 322,539 - BACOVA_04406 0.83 -0.5 322,539 - BACOVA_04406 0.83 +0.9 322,549 + BACOVA_04406 0.83 -1.2 322,586 + BACOVA_04406 0.85 +0.1 322,658 + BACOVA_04406 0.88 +0.2 322,658 + BACOVA_04406 0.88 +0.2 322,658 + BACOVA_04406 0.88 +0.3 322,658 + BACOVA_04406 0.88 -0.2 322,659 - BACOVA_04406 0.88 -0.7 322,708 + +0.1 322,708 + -0.5 322,780 + +0.5 322,781 - -0.0 322,795 + -1.5 322,795 + +0.2 322,795 + +1.1 322,796 - +0.3 322,815 + -1.8 322,815 + +0.1 322,845 + -0.4 322,856 + -0.3 322,899 + +0.8 322,899 + -0.8 322,900 - -1.2 322,927 + +0.6 322,927 + -0.9 322,928 - -1.5 322,928 - +1.3 322,937 + +0.0 322,951 - +0.5 323,028 - +1.6 323,069 - -0.2 323,095 + +0.5 323,095 + -0.7 323,096 - -0.4 323,096 - -0.3 323,105 + +0.8 323,106 - -0.5 323,106 - +0.6 323,107 + -0.8 323,107 + -0.3 323,108 - +1.2 323,108 - -0.4 323,108 - -1.3 323,108 - -1.0 323,108 - -0.6 323,109 + -0.2 323,110 - +1.5 323,195 + BACOVA_04407 0.27 -0.2 323,196 - BACOVA_04407 0.27 -0.8 323,254 - BACOVA_04407 0.41 -0.0 323,288 - BACOVA_04407 0.48 +0.4 323,335 - BACOVA_04407 0.59 +0.7 323,365 - BACOVA_04407 0.66 -0.1 323,365 - BACOVA_04407 0.66 -0.0 323,472 + +0.9 323,488 + +0.2 323,512 - +0.2 323,514 - +0.2 323,537 + +0.7 323,538 - -0.2 323,538 - +0.5 323,630 + BACOVA_04408 0.12 +1.2 323,679 + BACOVA_04408 0.26 -0.7 323,680 - BACOVA_04408 0.26 -0.8 323,680 - BACOVA_04408 0.26 -1.5 323,680 - BACOVA_04408 0.26 -0.4 323,828 + BACOVA_04408 0.69 +1.0 323,828 + BACOVA_04408 0.69 -0.0 323,829 - BACOVA_04408 0.70 -0.1 323,830 + BACOVA_04408 0.70 +0.7 323,831 - BACOVA_04408 0.70 +0.4 323,839 - BACOVA_04408 0.72 -1.9 323,893 - BACOVA_04408 0.88 -0.5 323,893 - BACOVA_04408 0.88 +0.2 323,893 - BACOVA_04408 0.88 +1.1 323,895 + BACOVA_04408 0.89 -1.4 323,895 + BACOVA_04408 0.89 -1.5 323,896 - BACOVA_04408 0.89 +0.4
Or see this region's nucleotide sequence