Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04276 and BACOVA_04277 are separated by 110 nucleotides BACOVA_04277 and BACOVA_04278 are separated by 2 nucleotides BACOVA_04278 and BACOVA_04279 are separated by 88 nucleotides
BACOVA_04276: BACOVA_04276 - mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 164,020 to 164,925
_04276
BACOVA_04277: BACOVA_04277 - putative cytidine deaminase, at 165,036 to 165,518
_04277
BACOVA_04278: BACOVA_04278 - transcriptional regulator, AraC family, at 165,521 to 166,360
_04278
BACOVA_04279: BACOVA_04279 - hypothetical protein, at 166,449 to 167,030
_04279
Position (kb) 165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.070 kb on + strand at 164.154 kb on - strand, within BACOVA_04276 at 164.155 kb on + strand, within BACOVA_04276 at 164.155 kb on + strand, within BACOVA_04276 at 164.155 kb on + strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.156 kb on - strand, within BACOVA_04276 at 164.160 kb on + strand, within BACOVA_04276 at 164.205 kb on + strand, within BACOVA_04276 at 164.206 kb on - strand, within BACOVA_04276 at 164.224 kb on - strand, within BACOVA_04276 at 164.268 kb on + strand, within BACOVA_04276 at 164.302 kb on - strand, within BACOVA_04276 at 164.325 kb on - strand, within BACOVA_04276 at 164.344 kb on - strand, within BACOVA_04276 at 164.346 kb on - strand, within BACOVA_04276 at 164.400 kb on - strand, within BACOVA_04276 at 164.422 kb on - strand, within BACOVA_04276 at 164.422 kb on - strand, within BACOVA_04276 at 164.424 kb on - strand, within BACOVA_04276 at 164.443 kb on - strand, within BACOVA_04276 at 164.460 kb on + strand, within BACOVA_04276 at 164.517 kb on + strand, within BACOVA_04276 at 164.519 kb on + strand, within BACOVA_04276 at 164.529 kb on + strand, within BACOVA_04276 at 164.591 kb on + strand, within BACOVA_04276 at 164.611 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.613 kb on - strand, within BACOVA_04276 at 164.686 kb on - strand, within BACOVA_04276 at 164.764 kb on - strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.816 kb on + strand, within BACOVA_04276 at 164.820 kb on + strand, within BACOVA_04276 at 164.820 kb on + strand, within BACOVA_04276 at 164.821 kb on - strand, within BACOVA_04276 at 164.825 kb on - strand, within BACOVA_04276 at 164.907 kb on + strand at 164.908 kb on - strand at 164.945 kb on - strand at 164.978 kb on + strand at 164.979 kb on - strand at 165.007 kb on + strand at 165.008 kb on - strand at 165.008 kb on - strand at 165.028 kb on + strand at 165.033 kb on + strand at 165.033 kb on + strand at 165.033 kb on + strand at 165.034 kb on - strand at 165.034 kb on - strand at 165.035 kb on + strand at 165.053 kb on + strand at 165.060 kb on - strand at 165.062 kb on + strand at 165.065 kb on + strand at 165.066 kb on - strand at 165.071 kb on - strand at 165.072 kb on + strand at 165.079 kb on - strand at 165.079 kb on - strand at 165.110 kb on + strand, within BACOVA_04277 at 165.144 kb on + strand, within BACOVA_04277 at 165.202 kb on + strand, within BACOVA_04277 at 165.202 kb on + strand, within BACOVA_04277 at 165.260 kb on + strand, within BACOVA_04277 at 165.260 kb on + strand, within BACOVA_04277 at 165.261 kb on - strand, within BACOVA_04277 at 165.261 kb on - strand, within BACOVA_04277 at 165.263 kb on + strand, within BACOVA_04277 at 165.269 kb on - strand, within BACOVA_04277 at 165.269 kb on - strand, within BACOVA_04277 at 165.269 kb on - strand, within BACOVA_04277 at 165.409 kb on - strand, within BACOVA_04277 at 165.433 kb on + strand, within BACOVA_04277 at 165.433 kb on + strand, within BACOVA_04277 at 165.434 kb on - strand, within BACOVA_04277 at 165.453 kb on + strand, within BACOVA_04277 at 165.460 kb on + strand, within BACOVA_04277 at 165.468 kb on - strand, within BACOVA_04277 at 165.520 kb on + strand at 165.520 kb on + strand at 165.520 kb on + strand at 165.533 kb on + strand at 165.547 kb on - strand at 165.566 kb on - strand at 165.566 kb on - strand at 165.575 kb on + strand at 165.575 kb on + strand at 165.624 kb on + strand, within BACOVA_04278 at 165.631 kb on - strand, within BACOVA_04278 at 165.646 kb on + strand, within BACOVA_04278 at 165.652 kb on - strand, within BACOVA_04278 at 165.875 kb on - strand, within BACOVA_04278 at 165.916 kb on + strand, within BACOVA_04278 at 165.917 kb on - strand, within BACOVA_04278 at 165.948 kb on + strand, within BACOVA_04278 at 165.982 kb on + strand, within BACOVA_04278 at 166.058 kb on - strand, within BACOVA_04278 at 166.226 kb on + strand, within BACOVA_04278 at 166.259 kb on - strand, within BACOVA_04278 at 166.327 kb on - strand at 166.376 kb on + strand at 166.383 kb on - strand at 166.420 kb on + strand at 166.421 kb on - strand at 166.421 kb on - strand at 166.421 kb on - strand at 166.426 kb on - strand at 166.435 kb on - strand at 166.471 kb on + strand at 166.472 kb on - strand at 166.472 kb on - strand at 166.512 kb on - strand, within BACOVA_04279
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 164,070 + -2.5 164,154 - BACOVA_04276 0.15 -0.4 164,155 + BACOVA_04276 0.15 +0.7 164,155 + BACOVA_04276 0.15 +0.0 164,155 + BACOVA_04276 0.15 -1.6 164,156 - BACOVA_04276 0.15 +0.2 164,156 - BACOVA_04276 0.15 +0.3 164,156 - BACOVA_04276 0.15 -1.0 164,156 - BACOVA_04276 0.15 +1.6 164,160 + BACOVA_04276 0.15 -0.9 164,205 + BACOVA_04276 0.20 -0.7 164,206 - BACOVA_04276 0.21 -1.8 164,224 - BACOVA_04276 0.23 -1.3 164,268 + BACOVA_04276 0.27 -2.1 164,302 - BACOVA_04276 0.31 +0.1 164,325 - BACOVA_04276 0.34 +0.9 164,344 - BACOVA_04276 0.36 -1.8 164,346 - BACOVA_04276 0.36 -1.8 164,400 - BACOVA_04276 0.42 -0.2 164,422 - BACOVA_04276 0.44 -1.3 164,422 - BACOVA_04276 0.44 -0.5 164,424 - BACOVA_04276 0.45 -0.8 164,443 - BACOVA_04276 0.47 -1.6 164,460 + BACOVA_04276 0.49 -1.1 164,517 + BACOVA_04276 0.55 -2.7 164,519 + BACOVA_04276 0.55 -0.9 164,529 + BACOVA_04276 0.56 -0.4 164,591 + BACOVA_04276 0.63 -0.4 164,611 - BACOVA_04276 0.65 -1.3 164,613 - BACOVA_04276 0.65 -2.1 164,613 - BACOVA_04276 0.65 -1.0 164,613 - BACOVA_04276 0.65 +0.2 164,686 - BACOVA_04276 0.74 -0.9 164,764 - BACOVA_04276 0.82 -0.9 164,816 + BACOVA_04276 0.88 -1.3 164,816 + BACOVA_04276 0.88 -2.3 164,816 + BACOVA_04276 0.88 -0.7 164,820 + BACOVA_04276 0.88 -1.7 164,820 + BACOVA_04276 0.88 -1.6 164,821 - BACOVA_04276 0.88 +0.5 164,825 - BACOVA_04276 0.89 +1.3 164,907 + +0.7 164,908 - -1.0 164,945 - -0.9 164,978 + -2.2 164,979 - -0.9 165,007 + +0.1 165,008 - -1.2 165,008 - +0.9 165,028 + -0.5 165,033 + +0.1 165,033 + +0.1 165,033 + +0.2 165,034 - +1.4 165,034 - +2.4 165,035 + +0.2 165,053 + -0.7 165,060 - -1.2 165,062 + -0.1 165,065 + +1.1 165,066 - -2.4 165,071 - -1.6 165,072 + +0.0 165,079 - -0.7 165,079 - +0.1 165,110 + BACOVA_04277 0.15 -0.2 165,144 + BACOVA_04277 0.22 +1.3 165,202 + BACOVA_04277 0.34 -0.2 165,202 + BACOVA_04277 0.34 -0.1 165,260 + BACOVA_04277 0.46 +0.4 165,260 + BACOVA_04277 0.46 +0.9 165,261 - BACOVA_04277 0.47 -0.7 165,261 - BACOVA_04277 0.47 +0.5 165,263 + BACOVA_04277 0.47 -0.2 165,269 - BACOVA_04277 0.48 +1.1 165,269 - BACOVA_04277 0.48 +0.4 165,269 - BACOVA_04277 0.48 +1.3 165,409 - BACOVA_04277 0.77 -0.4 165,433 + BACOVA_04277 0.82 -0.8 165,433 + BACOVA_04277 0.82 -0.7 165,434 - BACOVA_04277 0.82 +0.4 165,453 + BACOVA_04277 0.86 -1.0 165,460 + BACOVA_04277 0.88 -1.1 165,468 - BACOVA_04277 0.89 +0.5 165,520 + +0.7 165,520 + +0.4 165,520 + +0.1 165,533 + +0.5 165,547 - +0.6 165,566 - +0.7 165,566 - -0.4 165,575 + +0.4 165,575 + -0.4 165,624 + BACOVA_04278 0.12 +0.4 165,631 - BACOVA_04278 0.13 -0.1 165,646 + BACOVA_04278 0.15 +0.9 165,652 - BACOVA_04278 0.16 +1.3 165,875 - BACOVA_04278 0.42 -0.7 165,916 + BACOVA_04278 0.47 +0.2 165,917 - BACOVA_04278 0.47 +0.6 165,948 + BACOVA_04278 0.51 +1.0 165,982 + BACOVA_04278 0.55 +0.4 166,058 - BACOVA_04278 0.64 -0.8 166,226 + BACOVA_04278 0.84 -0.7 166,259 - BACOVA_04278 0.88 -0.8 166,327 - -1.8 166,376 + +0.4 166,383 - -0.0 166,420 + -1.1 166,421 - +2.6 166,421 - +1.9 166,421 - -0.1 166,426 - -0.2 166,435 - +1.7 166,471 + +0.7 166,472 - -0.2 166,472 - -0.5 166,512 - BACOVA_04279 0.11 -0.6
Or see this region's nucleotide sequence