Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04062

Experiment: Glycogen from bovine liver 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04060 and BACOVA_04061 are separated by 4 nucleotidesBACOVA_04061 and BACOVA_04062 are separated by 94 nucleotidesBACOVA_04062 and BACOVA_04063 are separated by 152 nucleotidesBACOVA_04063 and BACOVA_04064 are separated by 73 nucleotides BACOVA_04060: BACOVA_04060 - acetyltransferase, GNAT family, at 392,556 to 393,092 _04060 BACOVA_04061: BACOVA_04061 - putative ACR, COG1678, at 393,097 to 393,687 _04061 BACOVA_04062: BACOVA_04062 - aminotransferase, class I/II, at 393,782 to 395,098 _04062 BACOVA_04063: BACOVA_04063 - tRNA-Asp, at 395,251 to 395,324 _04063 BACOVA_04064: BACOVA_04064 - beta-ketoacyl-acyl-carrier-protein synthase III, at 395,398 to 396,402 _04064 Position (kb) 393 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2at 392.784 kb on - strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.792 kb on + strand, within BACOVA_04060at 392.801 kb on + strand, within BACOVA_04060at 392.804 kb on + strand, within BACOVA_04060at 392.805 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.944 kb on - strand, within BACOVA_04060at 392.963 kb on + strand, within BACOVA_04060at 393.084 kb on - strandat 393.108 kb on + strandat 393.151 kb on + strandat 393.151 kb on + strandat 393.152 kb on + strandat 393.178 kb on - strand, within BACOVA_04061at 393.203 kb on + strand, within BACOVA_04061at 393.204 kb on - strand, within BACOVA_04061at 393.253 kb on - strand, within BACOVA_04061at 393.256 kb on + strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.326 kb on - strand, within BACOVA_04061at 393.330 kb on + strand, within BACOVA_04061at 393.333 kb on - strand, within BACOVA_04061at 393.366 kb on - strand, within BACOVA_04061at 393.399 kb on + strand, within BACOVA_04061at 393.400 kb on - strand, within BACOVA_04061at 393.406 kb on + strand, within BACOVA_04061at 393.407 kb on - strand, within BACOVA_04061at 393.425 kb on - strand, within BACOVA_04061at 393.442 kb on - strand, within BACOVA_04061at 393.476 kb on + strand, within BACOVA_04061at 393.502 kb on - strand, within BACOVA_04061at 393.601 kb on + strand, within BACOVA_04061at 393.602 kb on - strand, within BACOVA_04061at 393.663 kb on + strandat 393.663 kb on + strandat 393.681 kb on + strandat 393.694 kb on - strandat 393.694 kb on - strandat 393.694 kb on - strandat 393.716 kb on - strandat 393.716 kb on - strandat 393.747 kb on - strandat 393.759 kb on + strandat 393.759 kb on + strandat 393.760 kb on - strandat 393.770 kb on + strandat 393.771 kb on - strandat 393.771 kb on - strandat 393.771 kb on - strandat 393.810 kb on - strandat 393.838 kb on - strandat 393.863 kb on - strandat 393.895 kb on + strandat 393.903 kb on - strandat 393.903 kb on - strandat 393.927 kb on + strand, within BACOVA_04062at 394.023 kb on + strand, within BACOVA_04062at 394.023 kb on + strand, within BACOVA_04062at 394.024 kb on - strand, within BACOVA_04062at 394.083 kb on + strand, within BACOVA_04062at 394.083 kb on + strand, within BACOVA_04062at 394.086 kb on - strand, within BACOVA_04062at 394.108 kb on + strand, within BACOVA_04062at 394.268 kb on + strand, within BACOVA_04062at 394.298 kb on - strand, within BACOVA_04062at 394.344 kb on - strand, within BACOVA_04062at 394.344 kb on - strand, within BACOVA_04062at 394.348 kb on - strand, within BACOVA_04062at 394.348 kb on - strand, within BACOVA_04062at 394.358 kb on - strand, within BACOVA_04062at 394.403 kb on + strand, within BACOVA_04062at 394.404 kb on - strand, within BACOVA_04062at 394.554 kb on - strand, within BACOVA_04062at 394.556 kb on - strand, within BACOVA_04062at 394.572 kb on + strand, within BACOVA_04062at 394.748 kb on - strand, within BACOVA_04062at 394.748 kb on - strand, within BACOVA_04062at 394.790 kb on + strand, within BACOVA_04062at 394.790 kb on + strand, within BACOVA_04062at 394.817 kb on - strand, within BACOVA_04062at 394.817 kb on - strand, within BACOVA_04062at 394.867 kb on - strand, within BACOVA_04062at 394.868 kb on + strand, within BACOVA_04062at 394.961 kb on - strand, within BACOVA_04062at 395.020 kb on + strandat 395.114 kb on - strandat 395.116 kb on + strandat 395.139 kb on - strandat 395.146 kb on - strandat 395.259 kb on - strand, within BACOVA_04063at 395.272 kb on - strand, within BACOVA_04063at 395.399 kb on + strandat 395.417 kb on + strandat 395.433 kb on - strandat 395.470 kb on - strandat 395.541 kb on + strand, within BACOVA_04064at 395.541 kb on + strand, within BACOVA_04064at 395.688 kb on + strand, within BACOVA_04064at 395.723 kb on + strand, within BACOVA_04064at 395.724 kb on - strand, within BACOVA_04064at 395.724 kb on - strand, within BACOVA_04064at 395.737 kb on - strand, within BACOVA_04064at 395.737 kb on - strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.756 kb on + strand, within BACOVA_04064at 395.770 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.793 kb on + strand, within BACOVA_04064at 395.794 kb on - strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.814 kb on + strand, within BACOVA_04064at 395.865 kb on + strand, within BACOVA_04064at 395.883 kb on + strand, within BACOVA_04064at 395.883 kb on + strand, within BACOVA_04064at 395.980 kb on + strand, within BACOVA_04064at 395.980 kb on + strand, within BACOVA_04064at 395.986 kb on + strand, within BACOVA_04064at 396.042 kb on - strand, within BACOVA_04064

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C)
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392,784 - BACOVA_04060 0.42 -1.3
392,792 + BACOVA_04060 0.44 -0.8
392,792 + BACOVA_04060 0.44 -0.3
392,801 + BACOVA_04060 0.46 -0.6
392,804 + BACOVA_04060 0.46 -0.9
392,805 - BACOVA_04060 0.46 +0.2
392,944 - BACOVA_04060 0.72 -1.3
392,944 - BACOVA_04060 0.72 +0.8
392,963 + BACOVA_04060 0.76 +0.2
393,084 - -1.6
393,108 + -0.3
393,151 + +0.1
393,151 + +0.5
393,152 + +0.1
393,178 - BACOVA_04061 0.14 -1.0
393,203 + BACOVA_04061 0.18 -0.6
393,204 - BACOVA_04061 0.18 +1.4
393,253 - BACOVA_04061 0.26 -0.1
393,256 + BACOVA_04061 0.27 -1.6
393,326 - BACOVA_04061 0.39 -1.3
393,326 - BACOVA_04061 0.39 -0.2
393,330 + BACOVA_04061 0.39 -0.0
393,333 - BACOVA_04061 0.40 +0.3
393,366 - BACOVA_04061 0.46 -0.8
393,399 + BACOVA_04061 0.51 -1.5
393,400 - BACOVA_04061 0.51 -1.1
393,406 + BACOVA_04061 0.52 -2.0
393,407 - BACOVA_04061 0.52 +1.5
393,425 - BACOVA_04061 0.55 -0.0
393,442 - BACOVA_04061 0.58 -0.0
393,476 + BACOVA_04061 0.64 -0.3
393,502 - BACOVA_04061 0.69 -1.5
393,601 + BACOVA_04061 0.85 -1.8
393,602 - BACOVA_04061 0.85 +0.4
393,663 + -1.1
393,663 + +0.3
393,681 + -1.3
393,694 - +2.0
393,694 - +0.2
393,694 - +0.0
393,716 - +0.2
393,716 - +1.6
393,747 - -0.3
393,759 + -0.2
393,759 + +1.2
393,760 - +0.9
393,770 + -0.1
393,771 - -0.2
393,771 - +0.2
393,771 - -0.4
393,810 - -1.5
393,838 - -0.4
393,863 - -1.5
393,895 + -0.2
393,903 - +0.8
393,903 - +0.1
393,927 + BACOVA_04062 0.11 -0.1
394,023 + BACOVA_04062 0.18 +0.9
394,023 + BACOVA_04062 0.18 -1.8
394,024 - BACOVA_04062 0.18 -0.3
394,083 + BACOVA_04062 0.23 +1.0
394,083 + BACOVA_04062 0.23 -0.4
394,086 - BACOVA_04062 0.23 +0.4
394,108 + BACOVA_04062 0.25 -0.2
394,268 + BACOVA_04062 0.37 -0.2
394,298 - BACOVA_04062 0.39 -0.0
394,344 - BACOVA_04062 0.43 -1.7
394,344 - BACOVA_04062 0.43 -2.7
394,348 - BACOVA_04062 0.43 +0.7
394,348 - BACOVA_04062 0.43 -0.8
394,358 - BACOVA_04062 0.44 +0.8
394,403 + BACOVA_04062 0.47 -0.4
394,404 - BACOVA_04062 0.47 +0.0
394,554 - BACOVA_04062 0.59 -0.3
394,556 - BACOVA_04062 0.59 -0.0
394,572 + BACOVA_04062 0.60 +0.3
394,748 - BACOVA_04062 0.73 -0.1
394,748 - BACOVA_04062 0.73 +0.4
394,790 + BACOVA_04062 0.77 +0.4
394,790 + BACOVA_04062 0.77 -1.3
394,817 - BACOVA_04062 0.79 -2.3
394,817 - BACOVA_04062 0.79 +0.1
394,867 - BACOVA_04062 0.82 -0.5
394,868 + BACOVA_04062 0.82 -0.1
394,961 - BACOVA_04062 0.90 -1.8
395,020 + -0.2
395,114 - -0.9
395,116 + -0.2
395,139 - +1.0
395,146 - +1.1
395,259 - BACOVA_04063 0.11 +0.6
395,272 - BACOVA_04063 0.28 -1.2
395,399 + -1.6
395,417 + -0.5
395,433 - +0.8
395,470 - +0.2
395,541 + BACOVA_04064 0.14 +0.5
395,541 + BACOVA_04064 0.14 +0.8
395,688 + BACOVA_04064 0.29 +0.2
395,723 + BACOVA_04064 0.32 -2.2
395,724 - BACOVA_04064 0.32 +0.1
395,724 - BACOVA_04064 0.32 +1.2
395,737 - BACOVA_04064 0.34 -1.1
395,737 - BACOVA_04064 0.34 -0.4
395,754 + BACOVA_04064 0.35 +0.1
395,754 + BACOVA_04064 0.35 -0.0
395,754 + BACOVA_04064 0.35 -0.4
395,756 + BACOVA_04064 0.36 -1.4
395,770 - BACOVA_04064 0.37 +2.0
395,779 - BACOVA_04064 0.38 -0.7
395,779 - BACOVA_04064 0.38 +0.2
395,779 - BACOVA_04064 0.38 +0.8
395,793 + BACOVA_04064 0.39 -0.7
395,794 - BACOVA_04064 0.39 +0.2
395,797 + BACOVA_04064 0.40 -0.7
395,797 + BACOVA_04064 0.40 -0.6
395,814 + BACOVA_04064 0.41 +0.6
395,865 + BACOVA_04064 0.46 -0.2
395,883 + BACOVA_04064 0.48 +0.4
395,883 + BACOVA_04064 0.48 -0.5
395,980 + BACOVA_04064 0.58 -0.3
395,980 + BACOVA_04064 0.58 -0.9
395,986 + BACOVA_04064 0.59 +0.4
396,042 - BACOVA_04064 0.64 -0.6

Or see this region's nucleotide sequence