Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02345 and BACOVA_02346 overlap by 14 nucleotides BACOVA_02346 and BACOVA_02347 overlap by 11 nucleotides BACOVA_02347 and BACOVA_02348 are separated by 225 nucleotides BACOVA_02348 and BACOVA_02349 are separated by 11 nucleotides
BACOVA_02345: BACOVA_02345 - hypothetical protein, at 107,090 to 107,713
_02345
BACOVA_02346: BACOVA_02346 - hypothetical protein, at 107,700 to 108,575
_02346
BACOVA_02347: BACOVA_02347 - hypothetical protein, at 108,565 to 109,557
_02347
BACOVA_02348: BACOVA_02348 - hypothetical protein, at 109,783 to 110,091
_02348
BACOVA_02349: BACOVA_02349 - DNA primase, at 110,103 to 113,420
_02349
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 107.683 kb on + strand at 107.684 kb on - strand at 107.684 kb on - strand at 107.684 kb on - strand at 107.701 kb on + strand at 107.706 kb on - strand at 107.730 kb on + strand at 107.731 kb on - strand at 107.731 kb on - strand at 107.771 kb on + strand at 107.771 kb on + strand at 107.772 kb on - strand at 107.798 kb on + strand, within BACOVA_02346 at 107.804 kb on + strand, within BACOVA_02346 at 107.805 kb on - strand, within BACOVA_02346 at 107.815 kb on - strand, within BACOVA_02346 at 107.850 kb on + strand, within BACOVA_02346 at 107.863 kb on + strand, within BACOVA_02346 at 108.019 kb on - strand, within BACOVA_02346 at 108.021 kb on - strand, within BACOVA_02346 at 108.022 kb on + strand, within BACOVA_02346 at 108.023 kb on - strand, within BACOVA_02346 at 108.029 kb on + strand, within BACOVA_02346 at 108.123 kb on - strand, within BACOVA_02346 at 108.147 kb on - strand, within BACOVA_02346 at 108.155 kb on + strand, within BACOVA_02346 at 108.162 kb on + strand, within BACOVA_02346 at 108.259 kb on - strand, within BACOVA_02346 at 108.290 kb on - strand, within BACOVA_02346 at 108.292 kb on + strand, within BACOVA_02346 at 108.293 kb on - strand, within BACOVA_02346 at 108.354 kb on + strand, within BACOVA_02346 at 108.501 kb on + strand at 108.552 kb on - strand at 108.552 kb on - strand at 108.566 kb on + strand at 108.567 kb on - strand at 108.584 kb on - strand at 109.746 kb on + strand at 109.746 kb on + strand at 109.748 kb on + strand at 109.784 kb on + strand at 109.804 kb on + strand at 109.804 kb on + strand at 109.806 kb on + strand at 109.849 kb on + strand, within BACOVA_02348 at 109.858 kb on + strand, within BACOVA_02348 at 109.912 kb on + strand, within BACOVA_02348 at 109.939 kb on + strand, within BACOVA_02348 at 109.982 kb on + strand, within BACOVA_02348 at 109.982 kb on + strand, within BACOVA_02348 at 110.310 kb on + strand at 110.374 kb on + strand at 110.395 kb on + strand at 110.532 kb on + strand, within BACOVA_02349 at 110.554 kb on + strand, within BACOVA_02349 at 110.555 kb on - strand, within BACOVA_02349
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 107,683 + +0.2 107,684 - -0.2 107,684 - +0.5 107,684 - -0.4 107,701 + -1.0 107,706 - +0.6 107,730 + -0.8 107,731 - +0.4 107,731 - +1.7 107,771 + +0.5 107,771 + -0.0 107,772 - +0.5 107,798 + BACOVA_02346 0.11 +1.3 107,804 + BACOVA_02346 0.12 +1.7 107,805 - BACOVA_02346 0.12 +1.5 107,815 - BACOVA_02346 0.13 +1.0 107,850 + BACOVA_02346 0.17 +0.5 107,863 + BACOVA_02346 0.19 -1.6 108,019 - BACOVA_02346 0.36 -1.0 108,021 - BACOVA_02346 0.37 -0.0 108,022 + BACOVA_02346 0.37 -0.4 108,023 - BACOVA_02346 0.37 -0.7 108,029 + BACOVA_02346 0.38 -0.3 108,123 - BACOVA_02346 0.48 -0.2 108,147 - BACOVA_02346 0.51 +0.3 108,155 + BACOVA_02346 0.52 +0.1 108,162 + BACOVA_02346 0.53 -0.0 108,259 - BACOVA_02346 0.64 +0.7 108,290 - BACOVA_02346 0.67 -1.2 108,292 + BACOVA_02346 0.68 -0.7 108,293 - BACOVA_02346 0.68 -0.6 108,354 + BACOVA_02346 0.75 +0.4 108,501 + -0.0 108,552 - +1.2 108,552 - +1.0 108,566 + -2.0 108,567 - -0.2 108,584 - +0.5 109,746 + -2.5 109,746 + -0.3 109,748 + -0.6 109,784 + +0.2 109,804 + -0.1 109,804 + +1.0 109,806 + +0.4 109,849 + BACOVA_02348 0.21 -0.1 109,858 + BACOVA_02348 0.24 +0.1 109,912 + BACOVA_02348 0.42 -0.0 109,939 + BACOVA_02348 0.50 -0.8 109,982 + BACOVA_02348 0.64 -0.5 109,982 + BACOVA_02348 0.64 -0.6 110,310 + +0.4 110,374 + -0.6 110,395 + -0.9 110,532 + BACOVA_02349 0.13 -1.9 110,554 + BACOVA_02349 0.14 +0.3 110,555 - BACOVA_02349 0.14 +1.8
Or see this region's nucleotide sequence