Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02347

Experiment: Glycogen from bovine liver 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02345 and BACOVA_02346 overlap by 14 nucleotidesBACOVA_02346 and BACOVA_02347 overlap by 11 nucleotidesBACOVA_02347 and BACOVA_02348 are separated by 225 nucleotidesBACOVA_02348 and BACOVA_02349 are separated by 11 nucleotides BACOVA_02345: BACOVA_02345 - hypothetical protein, at 107,090 to 107,713 _02345 BACOVA_02346: BACOVA_02346 - hypothetical protein, at 107,700 to 108,575 _02346 BACOVA_02347: BACOVA_02347 - hypothetical protein, at 108,565 to 109,557 _02347 BACOVA_02348: BACOVA_02348 - hypothetical protein, at 109,783 to 110,091 _02348 BACOVA_02349: BACOVA_02349 - DNA primase, at 110,103 to 113,420 _02349 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2at 107.683 kb on + strandat 107.684 kb on - strandat 107.684 kb on - strandat 107.684 kb on - strandat 107.701 kb on + strandat 107.706 kb on - strandat 107.730 kb on + strandat 107.731 kb on - strandat 107.731 kb on - strandat 107.771 kb on + strandat 107.771 kb on + strandat 107.772 kb on - strandat 107.798 kb on + strand, within BACOVA_02346at 107.804 kb on + strand, within BACOVA_02346at 107.805 kb on - strand, within BACOVA_02346at 107.815 kb on - strand, within BACOVA_02346at 107.850 kb on + strand, within BACOVA_02346at 107.863 kb on + strand, within BACOVA_02346at 108.019 kb on - strand, within BACOVA_02346at 108.021 kb on - strand, within BACOVA_02346at 108.022 kb on + strand, within BACOVA_02346at 108.023 kb on - strand, within BACOVA_02346at 108.029 kb on + strand, within BACOVA_02346at 108.123 kb on - strand, within BACOVA_02346at 108.147 kb on - strand, within BACOVA_02346at 108.155 kb on + strand, within BACOVA_02346at 108.162 kb on + strand, within BACOVA_02346at 108.259 kb on - strand, within BACOVA_02346at 108.290 kb on - strand, within BACOVA_02346at 108.292 kb on + strand, within BACOVA_02346at 108.293 kb on - strand, within BACOVA_02346at 108.354 kb on + strand, within BACOVA_02346at 108.501 kb on + strandat 108.552 kb on - strandat 108.552 kb on - strandat 108.566 kb on + strandat 108.567 kb on - strandat 108.584 kb on - strandat 109.746 kb on + strandat 109.746 kb on + strandat 109.748 kb on + strandat 109.784 kb on + strandat 109.804 kb on + strandat 109.804 kb on + strandat 109.806 kb on + strandat 109.849 kb on + strand, within BACOVA_02348at 109.858 kb on + strand, within BACOVA_02348at 109.912 kb on + strand, within BACOVA_02348at 109.939 kb on + strand, within BACOVA_02348at 109.982 kb on + strand, within BACOVA_02348at 109.982 kb on + strand, within BACOVA_02348at 110.310 kb on + strandat 110.374 kb on + strandat 110.395 kb on + strandat 110.532 kb on + strand, within BACOVA_02349at 110.554 kb on + strand, within BACOVA_02349at 110.555 kb on - strand, within BACOVA_02349

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C)
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107,683 + +0.2
107,684 - -0.2
107,684 - +0.5
107,684 - -0.4
107,701 + -1.0
107,706 - +0.6
107,730 + -0.8
107,731 - +0.4
107,731 - +1.7
107,771 + +0.5
107,771 + -0.0
107,772 - +0.5
107,798 + BACOVA_02346 0.11 +1.3
107,804 + BACOVA_02346 0.12 +1.7
107,805 - BACOVA_02346 0.12 +1.5
107,815 - BACOVA_02346 0.13 +1.0
107,850 + BACOVA_02346 0.17 +0.5
107,863 + BACOVA_02346 0.19 -1.6
108,019 - BACOVA_02346 0.36 -1.0
108,021 - BACOVA_02346 0.37 -0.0
108,022 + BACOVA_02346 0.37 -0.4
108,023 - BACOVA_02346 0.37 -0.7
108,029 + BACOVA_02346 0.38 -0.3
108,123 - BACOVA_02346 0.48 -0.2
108,147 - BACOVA_02346 0.51 +0.3
108,155 + BACOVA_02346 0.52 +0.1
108,162 + BACOVA_02346 0.53 -0.0
108,259 - BACOVA_02346 0.64 +0.7
108,290 - BACOVA_02346 0.67 -1.2
108,292 + BACOVA_02346 0.68 -0.7
108,293 - BACOVA_02346 0.68 -0.6
108,354 + BACOVA_02346 0.75 +0.4
108,501 + -0.0
108,552 - +1.2
108,552 - +1.0
108,566 + -2.0
108,567 - -0.2
108,584 - +0.5
109,746 + -2.5
109,746 + -0.3
109,748 + -0.6
109,784 + +0.2
109,804 + -0.1
109,804 + +1.0
109,806 + +0.4
109,849 + BACOVA_02348 0.21 -0.1
109,858 + BACOVA_02348 0.24 +0.1
109,912 + BACOVA_02348 0.42 -0.0
109,939 + BACOVA_02348 0.50 -0.8
109,982 + BACOVA_02348 0.64 -0.5
109,982 + BACOVA_02348 0.64 -0.6
110,310 + +0.4
110,374 + -0.6
110,395 + -0.9
110,532 + BACOVA_02349 0.13 -1.9
110,554 + BACOVA_02349 0.14 +0.3
110,555 - BACOVA_02349 0.14 +1.8

Or see this region's nucleotide sequence