Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01186 and BACOVA_01187 overlap by 28 nucleotides BACOVA_01187 and BACOVA_01188 overlap by 34 nucleotides BACOVA_01188 and BACOVA_01189 overlap by 16 nucleotides
BACOVA_01186: BACOVA_01186 - Beta-ketoacyl synthase, C-terminal domain protein, at 140,810 to 142,594
_01186
BACOVA_01187: BACOVA_01187 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 142,567 to 143,040
_01187
BACOVA_01188: BACOVA_01188 - FabA-like domain protein, at 143,007 to 143,456
_01188
BACOVA_01189: BACOVA_01189 - O-methyltransferase, at 143,441 to 144,511
_01189
Position (kb) 142
143
144 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.618 kb on - strand, within BACOVA_01186 at 141.618 kb on - strand, within BACOVA_01186 at 141.626 kb on + strand, within BACOVA_01186 at 141.653 kb on + strand, within BACOVA_01186 at 141.701 kb on + strand, within BACOVA_01186 at 141.702 kb on - strand, within BACOVA_01186 at 141.716 kb on + strand, within BACOVA_01186 at 141.716 kb on + strand, within BACOVA_01186 at 141.752 kb on - strand, within BACOVA_01186 at 141.772 kb on + strand, within BACOVA_01186 at 141.779 kb on - strand, within BACOVA_01186 at 141.865 kb on + strand, within BACOVA_01186 at 141.865 kb on + strand, within BACOVA_01186 at 141.865 kb on + strand, within BACOVA_01186 at 141.865 kb on + strand, within BACOVA_01186 at 141.865 kb on + strand, within BACOVA_01186 at 141.866 kb on - strand, within BACOVA_01186 at 141.905 kb on - strand, within BACOVA_01186 at 141.908 kb on - strand, within BACOVA_01186 at 141.908 kb on - strand, within BACOVA_01186 at 141.981 kb on - strand, within BACOVA_01186 at 141.982 kb on + strand, within BACOVA_01186 at 141.987 kb on + strand, within BACOVA_01186 at 141.987 kb on + strand, within BACOVA_01186 at 141.987 kb on + strand, within BACOVA_01186 at 141.987 kb on + strand, within BACOVA_01186 at 141.988 kb on - strand, within BACOVA_01186 at 142.040 kb on - strand, within BACOVA_01186 at 142.087 kb on - strand, within BACOVA_01186 at 142.087 kb on - strand, within BACOVA_01186 at 142.100 kb on + strand, within BACOVA_01186 at 142.121 kb on + strand, within BACOVA_01186 at 142.142 kb on - strand, within BACOVA_01186 at 142.163 kb on + strand, within BACOVA_01186 at 142.273 kb on + strand, within BACOVA_01186 at 142.274 kb on - strand, within BACOVA_01186 at 142.278 kb on - strand, within BACOVA_01186 at 142.278 kb on - strand, within BACOVA_01186 at 142.346 kb on + strand, within BACOVA_01186 at 142.353 kb on - strand, within BACOVA_01186 at 142.371 kb on + strand, within BACOVA_01186 at 142.488 kb on + strand at 142.492 kb on + strand at 142.492 kb on + strand at 142.493 kb on - strand at 142.538 kb on - strand at 142.547 kb on - strand at 142.561 kb on - strand at 142.561 kb on - strand at 142.562 kb on + strand at 142.562 kb on + strand at 142.563 kb on - strand at 142.564 kb on + strand at 142.565 kb on - strand at 142.568 kb on + strand at 142.617 kb on + strand, within BACOVA_01187 at 142.618 kb on - strand, within BACOVA_01187 at 142.618 kb on - strand, within BACOVA_01187 at 142.618 kb on - strand, within BACOVA_01187 at 142.618 kb on - strand, within BACOVA_01187 at 142.654 kb on + strand, within BACOVA_01187 at 142.654 kb on + strand, within BACOVA_01187 at 142.654 kb on + strand, within BACOVA_01187 at 142.655 kb on - strand, within BACOVA_01187 at 142.672 kb on + strand, within BACOVA_01187 at 142.672 kb on + strand, within BACOVA_01187 at 142.673 kb on - strand, within BACOVA_01187 at 142.673 kb on - strand, within BACOVA_01187 at 142.675 kb on + strand, within BACOVA_01187 at 142.675 kb on + strand, within BACOVA_01187 at 142.675 kb on + strand, within BACOVA_01187 at 142.676 kb on - strand, within BACOVA_01187 at 142.676 kb on - strand, within BACOVA_01187 at 142.677 kb on + strand, within BACOVA_01187 at 142.677 kb on + strand, within BACOVA_01187 at 142.677 kb on + strand, within BACOVA_01187 at 142.678 kb on - strand, within BACOVA_01187 at 142.702 kb on - strand, within BACOVA_01187 at 142.740 kb on + strand, within BACOVA_01187 at 142.740 kb on + strand, within BACOVA_01187 at 142.740 kb on + strand, within BACOVA_01187 at 142.740 kb on + strand, within BACOVA_01187 at 142.741 kb on - strand, within BACOVA_01187 at 142.741 kb on - strand, within BACOVA_01187 at 142.741 kb on - strand, within BACOVA_01187 at 142.778 kb on - strand, within BACOVA_01187 at 142.802 kb on - strand, within BACOVA_01187 at 142.813 kb on - strand, within BACOVA_01187 at 142.820 kb on + strand, within BACOVA_01187 at 142.823 kb on + strand, within BACOVA_01187 at 142.835 kb on + strand, within BACOVA_01187 at 142.840 kb on - strand, within BACOVA_01187 at 142.845 kb on + strand, within BACOVA_01187 at 142.845 kb on + strand, within BACOVA_01187 at 142.846 kb on - strand, within BACOVA_01187 at 142.846 kb on - strand, within BACOVA_01187 at 142.848 kb on - strand, within BACOVA_01187 at 142.860 kb on - strand, within BACOVA_01187 at 142.904 kb on + strand, within BACOVA_01187 at 142.905 kb on - strand, within BACOVA_01187 at 142.918 kb on + strand, within BACOVA_01187 at 143.021 kb on + strand at 143.087 kb on + strand, within BACOVA_01188 at 143.098 kb on - strand, within BACOVA_01188 at 143.107 kb on - strand, within BACOVA_01188 at 143.128 kb on - strand, within BACOVA_01188 at 143.128 kb on - strand, within BACOVA_01188 at 143.196 kb on + strand, within BACOVA_01188 at 143.196 kb on + strand, within BACOVA_01188 at 143.217 kb on - strand, within BACOVA_01188 at 143.218 kb on + strand, within BACOVA_01188 at 143.218 kb on + strand, within BACOVA_01188 at 143.264 kb on + strand, within BACOVA_01188 at 143.303 kb on + strand, within BACOVA_01188 at 143.332 kb on + strand, within BACOVA_01188 at 143.421 kb on + strand at 143.422 kb on - strand at 143.422 kb on - strand at 143.426 kb on + strand at 143.426 kb on + strand at 143.427 kb on - strand at 143.459 kb on + strand at 143.460 kb on - strand at 143.460 kb on - strand at 143.460 kb on - strand at 143.492 kb on + strand at 143.563 kb on + strand, within BACOVA_01189 at 143.563 kb on + strand, within BACOVA_01189 at 143.587 kb on - strand, within BACOVA_01189 at 143.610 kb on + strand, within BACOVA_01189 at 143.656 kb on + strand, within BACOVA_01189 at 143.658 kb on + strand, within BACOVA_01189 at 143.658 kb on + strand, within BACOVA_01189 at 143.658 kb on + strand, within BACOVA_01189 at 143.659 kb on - strand, within BACOVA_01189 at 143.659 kb on - strand, within BACOVA_01189 at 143.702 kb on + strand, within BACOVA_01189 at 143.818 kb on + strand, within BACOVA_01189 at 143.885 kb on - strand, within BACOVA_01189 at 143.887 kb on + strand, within BACOVA_01189 at 143.887 kb on + strand, within BACOVA_01189 at 143.887 kb on + strand, within BACOVA_01189 at 143.910 kb on + strand, within BACOVA_01189 at 143.911 kb on - strand, within BACOVA_01189 at 143.915 kb on + strand, within BACOVA_01189 at 143.915 kb on + strand, within BACOVA_01189 at 144.024 kb on + strand, within BACOVA_01189
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 141,618 - BACOVA_01186 0.45 +2.5 141,618 - BACOVA_01186 0.45 -0.2 141,626 + BACOVA_01186 0.46 +0.7 141,653 + BACOVA_01186 0.47 +0.9 141,701 + BACOVA_01186 0.50 -0.7 141,702 - BACOVA_01186 0.50 +0.3 141,716 + BACOVA_01186 0.51 -0.1 141,716 + BACOVA_01186 0.51 +1.4 141,752 - BACOVA_01186 0.53 +0.8 141,772 + BACOVA_01186 0.54 -1.6 141,779 - BACOVA_01186 0.54 +0.0 141,865 + BACOVA_01186 0.59 +0.0 141,865 + BACOVA_01186 0.59 +0.8 141,865 + BACOVA_01186 0.59 -0.2 141,865 + BACOVA_01186 0.59 -1.8 141,865 + BACOVA_01186 0.59 -0.1 141,866 - BACOVA_01186 0.59 +0.2 141,905 - BACOVA_01186 0.61 -0.1 141,908 - BACOVA_01186 0.62 +0.0 141,908 - BACOVA_01186 0.62 -0.7 141,981 - BACOVA_01186 0.66 -0.5 141,982 + BACOVA_01186 0.66 +0.6 141,987 + BACOVA_01186 0.66 -0.2 141,987 + BACOVA_01186 0.66 +0.6 141,987 + BACOVA_01186 0.66 +0.9 141,987 + BACOVA_01186 0.66 +1.9 141,988 - BACOVA_01186 0.66 -0.6 142,040 - BACOVA_01186 0.69 -1.0 142,087 - BACOVA_01186 0.72 +0.5 142,087 - BACOVA_01186 0.72 -0.1 142,100 + BACOVA_01186 0.72 -0.6 142,121 + BACOVA_01186 0.73 -1.3 142,142 - BACOVA_01186 0.75 +0.8 142,163 + BACOVA_01186 0.76 -0.4 142,273 + BACOVA_01186 0.82 +1.2 142,274 - BACOVA_01186 0.82 -0.1 142,278 - BACOVA_01186 0.82 +0.4 142,278 - BACOVA_01186 0.82 -0.7 142,346 + BACOVA_01186 0.86 -0.1 142,353 - BACOVA_01186 0.86 -0.7 142,371 + BACOVA_01186 0.87 +0.9 142,488 + -0.7 142,492 + +1.6 142,492 + -0.5 142,493 - +0.9 142,538 - -1.3 142,547 - +0.3 142,561 - -0.5 142,561 - +0.3 142,562 + +1.7 142,562 + +1.5 142,563 - -0.2 142,564 + +0.6 142,565 - +0.0 142,568 + -0.9 142,617 + BACOVA_01187 0.11 +2.7 142,618 - BACOVA_01187 0.11 -0.5 142,618 - BACOVA_01187 0.11 +0.4 142,618 - BACOVA_01187 0.11 +0.7 142,618 - BACOVA_01187 0.11 +1.3 142,654 + BACOVA_01187 0.18 -1.6 142,654 + BACOVA_01187 0.18 -0.6 142,654 + BACOVA_01187 0.18 -0.2 142,655 - BACOVA_01187 0.19 +1.3 142,672 + BACOVA_01187 0.22 +0.6 142,672 + BACOVA_01187 0.22 +0.3 142,673 - BACOVA_01187 0.22 -0.3 142,673 - BACOVA_01187 0.22 +0.5 142,675 + BACOVA_01187 0.23 -0.4 142,675 + BACOVA_01187 0.23 -0.7 142,675 + BACOVA_01187 0.23 +0.5 142,676 - BACOVA_01187 0.23 +1.2 142,676 - BACOVA_01187 0.23 +0.8 142,677 + BACOVA_01187 0.23 +0.8 142,677 + BACOVA_01187 0.23 +0.5 142,677 + BACOVA_01187 0.23 -1.1 142,678 - BACOVA_01187 0.23 -0.7 142,702 - BACOVA_01187 0.28 +0.1 142,740 + BACOVA_01187 0.36 -0.5 142,740 + BACOVA_01187 0.36 -0.7 142,740 + BACOVA_01187 0.36 +0.2 142,740 + BACOVA_01187 0.36 -0.2 142,741 - BACOVA_01187 0.37 +1.9 142,741 - BACOVA_01187 0.37 +0.3 142,741 - BACOVA_01187 0.37 -1.1 142,778 - BACOVA_01187 0.45 +0.2 142,802 - BACOVA_01187 0.50 +0.5 142,813 - BACOVA_01187 0.52 -0.2 142,820 + BACOVA_01187 0.53 +0.6 142,823 + BACOVA_01187 0.54 -0.3 142,835 + BACOVA_01187 0.57 +0.4 142,840 - BACOVA_01187 0.58 +0.5 142,845 + BACOVA_01187 0.59 +0.9 142,845 + BACOVA_01187 0.59 -0.1 142,846 - BACOVA_01187 0.59 -0.6 142,846 - BACOVA_01187 0.59 +0.3 142,848 - BACOVA_01187 0.59 -0.2 142,860 - BACOVA_01187 0.62 +0.5 142,904 + BACOVA_01187 0.71 -0.6 142,905 - BACOVA_01187 0.71 +0.7 142,918 + BACOVA_01187 0.74 +0.3 143,021 + -0.3 143,087 + BACOVA_01188 0.18 +0.6 143,098 - BACOVA_01188 0.20 +0.9 143,107 - BACOVA_01188 0.22 +1.0 143,128 - BACOVA_01188 0.27 +0.8 143,128 - BACOVA_01188 0.27 -0.8 143,196 + BACOVA_01188 0.42 -0.2 143,196 + BACOVA_01188 0.42 +1.1 143,217 - BACOVA_01188 0.47 -1.8 143,218 + BACOVA_01188 0.47 -0.1 143,218 + BACOVA_01188 0.47 -0.6 143,264 + BACOVA_01188 0.57 +0.2 143,303 + BACOVA_01188 0.66 -0.2 143,332 + BACOVA_01188 0.72 +0.6 143,421 + +0.1 143,422 - -1.2 143,422 - -0.3 143,426 + -0.1 143,426 + +0.9 143,427 - +1.3 143,459 + +0.2 143,460 - +0.0 143,460 - -1.7 143,460 - -0.1 143,492 + +0.4 143,563 + BACOVA_01189 0.11 -1.5 143,563 + BACOVA_01189 0.11 -0.5 143,587 - BACOVA_01189 0.14 -1.4 143,610 + BACOVA_01189 0.16 -0.3 143,656 + BACOVA_01189 0.20 +0.9 143,658 + BACOVA_01189 0.20 -0.6 143,658 + BACOVA_01189 0.20 -0.0 143,658 + BACOVA_01189 0.20 +0.3 143,659 - BACOVA_01189 0.20 -1.7 143,659 - BACOVA_01189 0.20 +0.6 143,702 + BACOVA_01189 0.24 +1.3 143,818 + BACOVA_01189 0.35 -0.4 143,885 - BACOVA_01189 0.41 +0.2 143,887 + BACOVA_01189 0.42 +0.3 143,887 + BACOVA_01189 0.42 +0.4 143,887 + BACOVA_01189 0.42 -0.4 143,910 + BACOVA_01189 0.44 +0.1 143,911 - BACOVA_01189 0.44 +0.3 143,915 + BACOVA_01189 0.44 +1.1 143,915 + BACOVA_01189 0.44 +0.5 144,024 + BACOVA_01189 0.54 +0.4
Or see this region's nucleotide sequence