Experiment: Galactan from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04693 and BACOVA_04694 are separated by 88 nucleotides BACOVA_04694 and BACOVA_04695 overlap by 26 nucleotides BACOVA_04695 and BACOVA_04696 are separated by 54 nucleotides
BACOVA_04693: BACOVA_04693 - hypothetical protein, at 60,759 to 61,610
_04693
BACOVA_04694: BACOVA_04694 - hypothetical protein, at 61,699 to 61,854
_04694
BACOVA_04695: BACOVA_04695 - putative plasmid recombination enzyme, at 61,829 to 63,286
_04695
BACOVA_04696: BACOVA_04696 - hypothetical protein, at 63,341 to 64,741
_04696
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -1
0
1
2
3 at 60.868 kb on - strand, within BACOVA_04693 at 60.930 kb on + strand, within BACOVA_04693 at 61.091 kb on - strand, within BACOVA_04693 at 61.091 kb on - strand, within BACOVA_04693 at 61.163 kb on - strand, within BACOVA_04693 at 61.163 kb on - strand, within BACOVA_04693 at 61.228 kb on + strand, within BACOVA_04693 at 61.681 kb on + strand at 61.683 kb on + strand at 61.684 kb on - strand at 61.736 kb on + strand, within BACOVA_04694 at 61.936 kb on + strand at 61.942 kb on + strand at 61.952 kb on + strand at 61.952 kb on + strand at 61.952 kb on + strand at 62.005 kb on - strand, within BACOVA_04695 at 62.005 kb on - strand, within BACOVA_04695 at 62.005 kb on - strand, within BACOVA_04695 at 62.053 kb on - strand, within BACOVA_04695 at 62.206 kb on + strand, within BACOVA_04695 at 62.207 kb on - strand, within BACOVA_04695 at 62.213 kb on - strand, within BACOVA_04695 at 62.256 kb on - strand, within BACOVA_04695 at 62.256 kb on - strand, within BACOVA_04695 at 62.277 kb on - strand, within BACOVA_04695 at 62.437 kb on + strand, within BACOVA_04695 at 62.462 kb on - strand, within BACOVA_04695 at 62.493 kb on + strand, within BACOVA_04695 at 62.650 kb on + strand, within BACOVA_04695 at 62.816 kb on - strand, within BACOVA_04695 at 62.829 kb on + strand, within BACOVA_04695 at 62.830 kb on - strand, within BACOVA_04695 at 62.921 kb on + strand, within BACOVA_04695 at 62.993 kb on + strand, within BACOVA_04695 at 62.996 kb on - strand, within BACOVA_04695 at 63.115 kb on + strand, within BACOVA_04695 at 63.300 kb on + strand at 63.301 kb on - strand at 63.304 kb on - strand at 63.327 kb on - strand at 63.402 kb on + strand at 63.402 kb on + strand at 63.403 kb on - strand at 63.421 kb on + strand at 63.426 kb on + strand at 63.426 kb on + strand at 63.426 kb on + strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.433 kb on + strand at 63.441 kb on - strand at 63.444 kb on - strand at 63.445 kb on + strand at 63.446 kb on - strand at 63.446 kb on - strand at 63.547 kb on + strand, within BACOVA_04696 at 63.611 kb on + strand, within BACOVA_04696 at 63.659 kb on - strand, within BACOVA_04696 at 63.665 kb on + strand, within BACOVA_04696 at 63.710 kb on + strand, within BACOVA_04696 at 63.718 kb on + strand, within BACOVA_04696 at 63.778 kb on - strand, within BACOVA_04696 at 63.778 kb on - strand, within BACOVA_04696 at 63.895 kb on - strand, within BACOVA_04696 at 63.981 kb on + strand, within BACOVA_04696 at 64.052 kb on + strand, within BACOVA_04696 at 64.082 kb on + strand, within BACOVA_04696 at 64.127 kb on + strand, within BACOVA_04696
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C) remove 60,868 - BACOVA_04693 0.13 -1.2 60,930 + BACOVA_04693 0.20 -0.6 61,091 - BACOVA_04693 0.39 +0.1 61,091 - BACOVA_04693 0.39 -0.6 61,163 - BACOVA_04693 0.47 -0.7 61,163 - BACOVA_04693 0.47 -0.6 61,228 + BACOVA_04693 0.55 +1.0 61,681 + -0.4 61,683 + +1.8 61,684 - -0.3 61,736 + BACOVA_04694 0.24 +1.0 61,936 + +1.0 61,942 + -1.0 61,952 + -0.1 61,952 + -1.4 61,952 + -0.8 62,005 - BACOVA_04695 0.12 +1.0 62,005 - BACOVA_04695 0.12 -0.8 62,005 - BACOVA_04695 0.12 +0.5 62,053 - BACOVA_04695 0.15 +1.0 62,206 + BACOVA_04695 0.26 -0.8 62,207 - BACOVA_04695 0.26 +0.5 62,213 - BACOVA_04695 0.26 -0.1 62,256 - BACOVA_04695 0.29 -0.0 62,256 - BACOVA_04695 0.29 -0.5 62,277 - BACOVA_04695 0.31 +0.6 62,437 + BACOVA_04695 0.42 -0.4 62,462 - BACOVA_04695 0.43 -0.2 62,493 + BACOVA_04695 0.46 +0.7 62,650 + BACOVA_04695 0.56 +0.1 62,816 - BACOVA_04695 0.68 +0.4 62,829 + BACOVA_04695 0.69 -0.7 62,830 - BACOVA_04695 0.69 +0.9 62,921 + BACOVA_04695 0.75 +0.3 62,993 + BACOVA_04695 0.80 +0.3 62,996 - BACOVA_04695 0.80 -0.5 63,115 + BACOVA_04695 0.88 +0.8 63,300 + +1.4 63,301 - +0.6 63,304 - +1.1 63,327 - +1.0 63,402 + +1.8 63,402 + +0.9 63,403 - +1.0 63,421 + +0.0 63,426 + -0.3 63,426 + -1.2 63,426 + +2.8 63,433 + +0.5 63,433 + -0.6 63,433 + -0.7 63,441 - -1.0 63,444 - -0.1 63,445 + +1.0 63,446 - +0.5 63,446 - -0.2 63,547 + BACOVA_04696 0.15 +2.0 63,611 + BACOVA_04696 0.19 -0.2 63,659 - BACOVA_04696 0.23 +0.1 63,665 + BACOVA_04696 0.23 +0.3 63,710 + BACOVA_04696 0.26 +0.8 63,718 + BACOVA_04696 0.27 -0.9 63,778 - BACOVA_04696 0.31 +0.6 63,778 - BACOVA_04696 0.31 +0.2 63,895 - BACOVA_04696 0.40 +0.6 63,981 + BACOVA_04696 0.46 -1.2 64,052 + BACOVA_04696 0.51 -0.9 64,082 + BACOVA_04696 0.53 +0.7 64,127 + BACOVA_04696 0.56 -1.2
Or see this region's nucleotide sequence