Experiment: Galactan from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02451 and BACOVA_02452 are separated by 47 nucleotides BACOVA_02452 and BACOVA_02453 are separated by 23 nucleotides BACOVA_02453 and BACOVA_02454 are separated by 228 nucleotides BACOVA_02454 and BACOVA_02455 are separated by 131 nucleotides
BACOVA_02451: BACOVA_02451 - hypothetical protein, at 215,948 to 216,328
_02451
BACOVA_02452: BACOVA_02452 - hypothetical protein, at 216,376 to 216,726
_02452
BACOVA_02453: BACOVA_02453 - hypothetical protein, at 216,750 to 217,094
_02453
BACOVA_02454: BACOVA_02454 - hypothetical protein, at 217,323 to 217,733
_02454
BACOVA_02455: BACOVA_02455 - site-specific recombinase, phage integrase family, at 217,865 to 218,818
_02455
Position (kb) 217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 216.698 kb on + strand at 216.715 kb on - strand at 216.721 kb on - strand at 216.736 kb on + strand at 216.758 kb on + strand at 216.759 kb on - strand at 216.830 kb on + strand, within BACOVA_02453 at 216.943 kb on - strand, within BACOVA_02453 at 217.034 kb on + strand, within BACOVA_02453 at 217.051 kb on - strand, within BACOVA_02453 at 217.051 kb on - strand, within BACOVA_02453 at 217.166 kb on + strand at 217.167 kb on - strand at 217.199 kb on + strand at 217.218 kb on + strand at 217.288 kb on + strand at 217.324 kb on + strand at 217.324 kb on + strand at 217.425 kb on + strand, within BACOVA_02454 at 217.425 kb on + strand, within BACOVA_02454 at 217.425 kb on + strand, within BACOVA_02454 at 217.426 kb on - strand, within BACOVA_02454 at 217.426 kb on - strand, within BACOVA_02454 at 217.427 kb on + strand, within BACOVA_02454 at 217.472 kb on - strand, within BACOVA_02454 at 217.489 kb on + strand, within BACOVA_02454 at 217.493 kb on + strand, within BACOVA_02454 at 217.493 kb on + strand, within BACOVA_02454 at 217.494 kb on - strand, within BACOVA_02454 at 217.526 kb on + strand, within BACOVA_02454 at 217.527 kb on - strand, within BACOVA_02454 at 217.560 kb on + strand, within BACOVA_02454 at 217.560 kb on + strand, within BACOVA_02454 at 217.564 kb on + strand, within BACOVA_02454 at 217.565 kb on - strand, within BACOVA_02454 at 217.565 kb on - strand, within BACOVA_02454 at 217.577 kb on - strand, within BACOVA_02454 at 217.602 kb on + strand, within BACOVA_02454 at 217.703 kb on + strand at 217.768 kb on + strand at 217.780 kb on + strand at 217.780 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C) remove 216,698 + +0.9 216,715 - -1.3 216,721 - +0.3 216,736 + +0.6 216,758 + -0.3 216,759 - -0.3 216,830 + BACOVA_02453 0.23 +0.7 216,943 - BACOVA_02453 0.56 -1.0 217,034 + BACOVA_02453 0.82 +1.3 217,051 - BACOVA_02453 0.87 +0.9 217,051 - BACOVA_02453 0.87 +0.3 217,166 + +0.2 217,167 - +0.7 217,199 + -0.2 217,218 + -0.2 217,288 + +1.1 217,324 + -0.6 217,324 + -2.0 217,425 + BACOVA_02454 0.25 -1.9 217,425 + BACOVA_02454 0.25 -0.2 217,425 + BACOVA_02454 0.25 +0.4 217,426 - BACOVA_02454 0.25 -1.3 217,426 - BACOVA_02454 0.25 -1.3 217,427 + BACOVA_02454 0.25 +0.5 217,472 - BACOVA_02454 0.36 -0.6 217,489 + BACOVA_02454 0.40 -1.1 217,493 + BACOVA_02454 0.41 +0.1 217,493 + BACOVA_02454 0.41 -0.7 217,494 - BACOVA_02454 0.42 -0.9 217,526 + BACOVA_02454 0.49 +0.5 217,527 - BACOVA_02454 0.50 -0.4 217,560 + BACOVA_02454 0.58 +0.4 217,560 + BACOVA_02454 0.58 +0.2 217,564 + BACOVA_02454 0.59 +0.2 217,565 - BACOVA_02454 0.59 -0.4 217,565 - BACOVA_02454 0.59 +0.2 217,577 - BACOVA_02454 0.62 +0.1 217,602 + BACOVA_02454 0.68 -0.2 217,703 + +2.1 217,768 + -1.0 217,780 + +0.1 217,780 + +0.4
Or see this region's nucleotide sequence