Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02432

Experiment: Galactan from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02430 and BACOVA_02431 are separated by 220 nucleotidesBACOVA_02431 and BACOVA_02432 are separated by 57 nucleotidesBACOVA_02432 and BACOVA_02433 are separated by 30 nucleotides BACOVA_02430: BACOVA_02430 - hypothetical protein, at 195,225 to 196,508 _02430 BACOVA_02431: BACOVA_02431 - hypothetical protein, at 196,729 to 196,836 _02431 BACOVA_02432: BACOVA_02432 - transcriptional regulator, AraC family, at 196,894 to 197,793 _02432 BACOVA_02433: BACOVA_02433 - transcriptional regulator, AraC family, at 197,824 to 198,726 _02433 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 196.051 kb on - strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.090 kb on + strand, within BACOVA_02430at 196.091 kb on - strand, within BACOVA_02430at 196.094 kb on + strand, within BACOVA_02430at 196.095 kb on - strand, within BACOVA_02430at 196.095 kb on - strand, within BACOVA_02430at 196.132 kb on - strand, within BACOVA_02430at 196.187 kb on + strand, within BACOVA_02430at 196.188 kb on - strand, within BACOVA_02430at 196.188 kb on - strand, within BACOVA_02430at 196.194 kb on - strand, within BACOVA_02430at 196.194 kb on - strand, within BACOVA_02430at 196.198 kb on - strand, within BACOVA_02430at 196.198 kb on - strand, within BACOVA_02430at 196.224 kb on - strand, within BACOVA_02430at 196.296 kb on + strand, within BACOVA_02430at 196.297 kb on - strand, within BACOVA_02430at 196.297 kb on - strand, within BACOVA_02430at 196.300 kb on + strand, within BACOVA_02430at 196.301 kb on - strand, within BACOVA_02430at 196.394 kb on + strandat 196.394 kb on + strandat 196.395 kb on - strandat 196.459 kb on - strandat 196.489 kb on + strandat 196.490 kb on - strandat 196.490 kb on - strandat 196.490 kb on - strandat 196.509 kb on + strandat 196.510 kb on - strandat 196.536 kb on + strandat 196.539 kb on - strandat 196.543 kb on - strandat 196.637 kb on + strandat 196.638 kb on - strandat 196.670 kb on - strandat 196.670 kb on - strandat 196.730 kb on + strandat 196.874 kb on - strandat 196.890 kb on - strandat 196.904 kb on - strandat 197.013 kb on + strand, within BACOVA_02432at 197.014 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.145 kb on + strand, within BACOVA_02432at 197.146 kb on - strand, within BACOVA_02432at 197.155 kb on + strand, within BACOVA_02432at 197.158 kb on - strand, within BACOVA_02432at 197.221 kb on - strand, within BACOVA_02432at 197.229 kb on + strand, within BACOVA_02432at 197.241 kb on + strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.297 kb on - strand, within BACOVA_02432at 197.301 kb on - strand, within BACOVA_02432at 197.311 kb on + strand, within BACOVA_02432at 197.323 kb on - strand, within BACOVA_02432at 197.362 kb on - strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.408 kb on - strand, within BACOVA_02432at 197.426 kb on + strand, within BACOVA_02432at 197.439 kb on + strand, within BACOVA_02432at 197.440 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.445 kb on + strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.455 kb on - strand, within BACOVA_02432at 197.501 kb on - strand, within BACOVA_02432at 197.503 kb on - strand, within BACOVA_02432at 197.526 kb on + strand, within BACOVA_02432at 197.527 kb on - strand, within BACOVA_02432at 197.542 kb on - strand, within BACOVA_02432at 197.547 kb on + strand, within BACOVA_02432at 197.547 kb on + strand, within BACOVA_02432at 197.577 kb on + strand, within BACOVA_02432at 197.609 kb on + strand, within BACOVA_02432at 197.609 kb on + strand, within BACOVA_02432at 197.610 kb on - strand, within BACOVA_02432at 197.610 kb on - strand, within BACOVA_02432at 197.615 kb on + strand, within BACOVA_02432at 197.616 kb on - strand, within BACOVA_02432at 197.629 kb on - strand, within BACOVA_02432at 197.652 kb on - strand, within BACOVA_02432at 197.652 kb on - strand, within BACOVA_02432at 197.714 kb on - strandat 197.784 kb on + strandat 197.784 kb on + strandat 197.785 kb on - strandat 197.785 kb on - strandat 197.810 kb on + strandat 197.819 kb on + strandat 197.841 kb on - strandat 197.841 kb on - strandat 197.916 kb on - strand, within BACOVA_02433at 197.916 kb on - strand, within BACOVA_02433at 197.974 kb on - strand, within BACOVA_02433at 197.990 kb on + strand, within BACOVA_02433at 197.991 kb on - strand, within BACOVA_02433at 198.131 kb on - strand, within BACOVA_02433at 198.145 kb on - strand, within BACOVA_02433at 198.151 kb on + strand, within BACOVA_02433at 198.152 kb on - strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.178 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.210 kb on - strand, within BACOVA_02433at 198.217 kb on + strand, within BACOVA_02433at 198.241 kb on - strand, within BACOVA_02433at 198.267 kb on + strand, within BACOVA_02433at 198.268 kb on - strand, within BACOVA_02433at 198.295 kb on + strand, within BACOVA_02433at 198.296 kb on - strand, within BACOVA_02433at 198.356 kb on + strand, within BACOVA_02433at 198.391 kb on + strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.600 kb on + strand, within BACOVA_02433at 198.606 kb on + strand, within BACOVA_02433at 198.609 kb on - strand, within BACOVA_02433at 198.624 kb on + strand, within BACOVA_02433at 198.643 kb on + strandat 198.644 kb on - strandat 198.648 kb on + strandat 198.652 kb on + strandat 198.716 kb on - strandat 198.737 kb on - strandat 198.755 kb on + strandat 198.756 kb on - strandat 198.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C)
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196,051 - BACOVA_02430 0.64 -1.9
196,088 + BACOVA_02430 0.67 +0.2
196,088 + BACOVA_02430 0.67 -0.9
196,088 + BACOVA_02430 0.67 +0.3
196,089 - BACOVA_02430 0.67 -0.3
196,089 - BACOVA_02430 0.67 -0.2
196,089 - BACOVA_02430 0.67 -0.0
196,090 + BACOVA_02430 0.67 +0.6
196,091 - BACOVA_02430 0.67 +1.5
196,094 + BACOVA_02430 0.68 -0.8
196,095 - BACOVA_02430 0.68 +1.0
196,095 - BACOVA_02430 0.68 +0.6
196,132 - BACOVA_02430 0.71 +1.0
196,187 + BACOVA_02430 0.75 -1.2
196,188 - BACOVA_02430 0.75 -0.8
196,188 - BACOVA_02430 0.75 -1.3
196,194 - BACOVA_02430 0.75 +1.0
196,194 - BACOVA_02430 0.75 -1.9
196,198 - BACOVA_02430 0.76 -2.4
196,198 - BACOVA_02430 0.76 -0.5
196,224 - BACOVA_02430 0.78 +0.2
196,296 + BACOVA_02430 0.83 -0.5
196,297 - BACOVA_02430 0.83 +0.3
196,297 - BACOVA_02430 0.83 -0.2
196,300 + BACOVA_02430 0.84 -1.4
196,301 - BACOVA_02430 0.84 +0.2
196,394 + -0.8
196,394 + -1.3
196,395 - +0.3
196,459 - -1.4
196,489 + +0.3
196,490 - -0.9
196,490 - +0.1
196,490 - -0.4
196,509 + -1.3
196,510 - +0.4
196,536 + -0.1
196,539 - -0.2
196,543 - -0.2
196,637 + +0.7
196,638 - +0.2
196,670 - +0.8
196,670 - -0.5
196,730 + +0.4
196,874 - +0.7
196,890 - -0.3
196,904 - -0.1
197,013 + BACOVA_02432 0.13 -0.6
197,014 - BACOVA_02432 0.13 +0.3
197,061 - BACOVA_02432 0.19 +0.3
197,061 - BACOVA_02432 0.19 +0.7
197,141 + BACOVA_02432 0.27 +1.1
197,141 + BACOVA_02432 0.27 -0.9
197,141 + BACOVA_02432 0.27 -0.7
197,145 + BACOVA_02432 0.28 -1.4
197,146 - BACOVA_02432 0.28 -0.5
197,155 + BACOVA_02432 0.29 -0.7
197,158 - BACOVA_02432 0.29 +0.1
197,221 - BACOVA_02432 0.36 -0.1
197,229 + BACOVA_02432 0.37 +0.3
197,241 + BACOVA_02432 0.39 -0.1
197,248 - BACOVA_02432 0.39 +0.6
197,248 - BACOVA_02432 0.39 +1.0
197,290 + BACOVA_02432 0.44 +0.7
197,290 + BACOVA_02432 0.44 +1.3
197,291 - BACOVA_02432 0.44 -0.3
197,291 - BACOVA_02432 0.44 +0.3
197,297 - BACOVA_02432 0.45 -1.7
197,301 - BACOVA_02432 0.45 -0.3
197,311 + BACOVA_02432 0.46 +0.0
197,323 - BACOVA_02432 0.48 -0.7
197,362 - BACOVA_02432 0.52 +0.0
197,403 + BACOVA_02432 0.57 +0.3
197,403 + BACOVA_02432 0.57 -0.1
197,407 + BACOVA_02432 0.57 -0.5
197,407 + BACOVA_02432 0.57 +1.2
197,407 + BACOVA_02432 0.57 -1.2
197,408 - BACOVA_02432 0.57 -1.4
197,426 + BACOVA_02432 0.59 +0.9
197,439 + BACOVA_02432 0.61 +1.2
197,440 - BACOVA_02432 0.61 -1.7
197,442 - BACOVA_02432 0.61 -0.3
197,442 - BACOVA_02432 0.61 -1.4
197,445 + BACOVA_02432 0.61 +2.3
197,446 - BACOVA_02432 0.61 +0.0
197,446 - BACOVA_02432 0.61 -0.4
197,450 - BACOVA_02432 0.62 -0.3
197,450 - BACOVA_02432 0.62 -0.3
197,454 + BACOVA_02432 0.62 +0.1
197,454 + BACOVA_02432 0.62 -0.4
197,454 + BACOVA_02432 0.62 -0.1
197,455 - BACOVA_02432 0.62 -1.8
197,501 - BACOVA_02432 0.67 -1.4
197,503 - BACOVA_02432 0.68 +0.6
197,526 + BACOVA_02432 0.70 -0.6
197,527 - BACOVA_02432 0.70 -0.5
197,542 - BACOVA_02432 0.72 -0.6
197,547 + BACOVA_02432 0.73 -0.8
197,547 + BACOVA_02432 0.73 -0.5
197,577 + BACOVA_02432 0.76 -0.1
197,609 + BACOVA_02432 0.79 +0.9
197,609 + BACOVA_02432 0.79 -1.1
197,610 - BACOVA_02432 0.80 +0.4
197,610 - BACOVA_02432 0.80 +0.0
197,615 + BACOVA_02432 0.80 +0.7
197,616 - BACOVA_02432 0.80 +0.0
197,629 - BACOVA_02432 0.82 -2.5
197,652 - BACOVA_02432 0.84 -0.5
197,652 - BACOVA_02432 0.84 +1.1
197,714 - +0.9
197,784 + -0.4
197,784 + +0.4
197,785 - -0.1
197,785 - -1.1
197,810 + +1.5
197,819 + +0.3
197,841 - -2.1
197,841 - -0.4
197,916 - BACOVA_02433 0.10 +0.9
197,916 - BACOVA_02433 0.10 -0.0
197,974 - BACOVA_02433 0.17 -0.1
197,990 + BACOVA_02433 0.18 -0.7
197,991 - BACOVA_02433 0.18 +0.5
198,131 - BACOVA_02433 0.34 -0.2
198,145 - BACOVA_02433 0.36 -0.3
198,151 + BACOVA_02433 0.36 +0.0
198,152 - BACOVA_02433 0.36 -1.8
198,153 + BACOVA_02433 0.36 -0.3
198,153 + BACOVA_02433 0.36 -0.0
198,178 - BACOVA_02433 0.39 +0.2
198,205 - BACOVA_02433 0.42 +0.1
198,205 - BACOVA_02433 0.42 +0.6
198,205 - BACOVA_02433 0.42 -0.1
198,210 - BACOVA_02433 0.43 +0.5
198,217 + BACOVA_02433 0.44 -0.3
198,241 - BACOVA_02433 0.46 -0.0
198,267 + BACOVA_02433 0.49 -0.8
198,268 - BACOVA_02433 0.49 +0.5
198,295 + BACOVA_02433 0.52 +0.7
198,296 - BACOVA_02433 0.52 -1.0
198,356 + BACOVA_02433 0.59 +0.3
198,391 + BACOVA_02433 0.63 -0.4
198,425 - BACOVA_02433 0.67 +0.9
198,425 - BACOVA_02433 0.67 -0.8
198,600 + BACOVA_02433 0.86 +0.9
198,606 + BACOVA_02433 0.87 +0.4
198,609 - BACOVA_02433 0.87 -0.3
198,624 + BACOVA_02433 0.89 -0.1
198,643 + +0.3
198,644 - -0.7
198,648 + +0.2
198,652 + +0.4
198,716 - +1.4
198,737 - -0.9
198,755 + +0.4
198,756 - -0.3
198,771 - +0.1

Or see this region's nucleotide sequence