Experiment: Galactan from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00518 and BACOVA_00519 are separated by 262 nucleotides BACOVA_00519 and BACOVA_00520 are separated by 214 nucleotides
BACOVA_00518: BACOVA_00518 - TrkA C-terminal domain protein, at 16,167 to 17,831
_00518
BACOVA_00519: BACOVA_00519 - hypothetical protein, at 18,094 to 18,537
_00519
BACOVA_00520: BACOVA_00520 - ATPase family associated with various cellular activities (AAA), at 18,752 to 20,326
_00520
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.112 kb on + strand, within BACOVA_00518 at 17.112 kb on + strand, within BACOVA_00518 at 17.113 kb on - strand, within BACOVA_00518 at 17.113 kb on - strand, within BACOVA_00518 at 17.113 kb on - strand, within BACOVA_00518 at 17.130 kb on + strand, within BACOVA_00518 at 17.169 kb on + strand, within BACOVA_00518 at 17.169 kb on + strand, within BACOVA_00518 at 17.170 kb on - strand, within BACOVA_00518 at 17.170 kb on - strand, within BACOVA_00518 at 17.172 kb on - strand, within BACOVA_00518 at 17.172 kb on - strand, within BACOVA_00518 at 17.227 kb on + strand, within BACOVA_00518 at 17.323 kb on - strand, within BACOVA_00518 at 17.421 kb on - strand, within BACOVA_00518 at 17.445 kb on - strand, within BACOVA_00518 at 17.453 kb on + strand, within BACOVA_00518 at 17.480 kb on - strand, within BACOVA_00518 at 17.534 kb on + strand, within BACOVA_00518 at 17.535 kb on - strand, within BACOVA_00518 at 17.602 kb on + strand, within BACOVA_00518 at 17.818 kb on + strand at 17.818 kb on + strand at 17.819 kb on - strand at 17.820 kb on + strand at 17.820 kb on + strand at 17.820 kb on + strand at 17.835 kb on + strand at 17.836 kb on - strand at 17.837 kb on + strand at 17.837 kb on + strand at 17.917 kb on - strand at 17.928 kb on + strand at 17.929 kb on - strand at 17.943 kb on + strand at 17.950 kb on + strand at 17.984 kb on + strand at 17.987 kb on + strand at 17.988 kb on - strand at 18.007 kb on + strand at 18.145 kb on + strand, within BACOVA_00519 at 18.164 kb on + strand, within BACOVA_00519 at 18.165 kb on - strand, within BACOVA_00519 at 18.165 kb on - strand, within BACOVA_00519 at 18.167 kb on - strand, within BACOVA_00519 at 18.201 kb on - strand, within BACOVA_00519 at 18.207 kb on + strand, within BACOVA_00519 at 18.207 kb on + strand, within BACOVA_00519 at 18.208 kb on - strand, within BACOVA_00519 at 18.228 kb on - strand, within BACOVA_00519 at 18.254 kb on + strand, within BACOVA_00519 at 18.260 kb on + strand, within BACOVA_00519 at 18.285 kb on - strand, within BACOVA_00519 at 18.296 kb on - strand, within BACOVA_00519 at 18.297 kb on + strand, within BACOVA_00519 at 18.347 kb on + strand, within BACOVA_00519 at 18.347 kb on + strand, within BACOVA_00519 at 18.351 kb on + strand, within BACOVA_00519 at 18.375 kb on + strand, within BACOVA_00519 at 18.385 kb on - strand, within BACOVA_00519 at 18.412 kb on - strand, within BACOVA_00519 at 18.413 kb on + strand, within BACOVA_00519 at 18.413 kb on + strand, within BACOVA_00519 at 18.414 kb on - strand, within BACOVA_00519 at 18.490 kb on + strand, within BACOVA_00519 at 18.492 kb on + strand, within BACOVA_00519 at 18.498 kb on + strand at 18.520 kb on - strand at 18.520 kb on - strand at 18.591 kb on - strand at 18.601 kb on + strand at 18.660 kb on - strand at 18.841 kb on - strand at 18.844 kb on - strand at 18.866 kb on - strand at 18.873 kb on + strand at 18.953 kb on + strand, within BACOVA_00520 at 18.954 kb on - strand, within BACOVA_00520 at 19.031 kb on + strand, within BACOVA_00520 at 19.039 kb on + strand, within BACOVA_00520 at 19.042 kb on + strand, within BACOVA_00520 at 19.089 kb on + strand, within BACOVA_00520 at 19.131 kb on + strand, within BACOVA_00520 at 19.146 kb on + strand, within BACOVA_00520 at 19.147 kb on - strand, within BACOVA_00520 at 19.148 kb on + strand, within BACOVA_00520 at 19.148 kb on + strand, within BACOVA_00520 at 19.149 kb on - strand, within BACOVA_00520 at 19.149 kb on - strand, within BACOVA_00520 at 19.166 kb on - strand, within BACOVA_00520 at 19.242 kb on + strand, within BACOVA_00520 at 19.292 kb on + strand, within BACOVA_00520 at 19.330 kb on - strand, within BACOVA_00520 at 19.372 kb on - strand, within BACOVA_00520 at 19.372 kb on - strand, within BACOVA_00520 at 19.373 kb on + strand, within BACOVA_00520 at 19.383 kb on + strand, within BACOVA_00520 at 19.404 kb on + strand, within BACOVA_00520 at 19.405 kb on - strand, within BACOVA_00520 at 19.408 kb on + strand, within BACOVA_00520 at 19.409 kb on - strand, within BACOVA_00520 at 19.418 kb on - strand, within BACOVA_00520 at 19.442 kb on - strand, within BACOVA_00520 at 19.464 kb on - strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.466 kb on - strand, within BACOVA_00520 at 19.466 kb on - strand, within BACOVA_00520 at 19.500 kb on - strand, within BACOVA_00520 at 19.501 kb on + strand, within BACOVA_00520 at 19.501 kb on + strand, within BACOVA_00520 at 19.503 kb on + strand, within BACOVA_00520 at 19.504 kb on - strand, within BACOVA_00520 at 19.504 kb on - strand, within BACOVA_00520
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C) remove 17,112 + BACOVA_00518 0.57 -0.2 17,112 + BACOVA_00518 0.57 -1.4 17,113 - BACOVA_00518 0.57 -0.8 17,113 - BACOVA_00518 0.57 -0.7 17,113 - BACOVA_00518 0.57 -0.2 17,130 + BACOVA_00518 0.58 -2.0 17,169 + BACOVA_00518 0.60 -1.4 17,169 + BACOVA_00518 0.60 -2.9 17,170 - BACOVA_00518 0.60 -1.3 17,170 - BACOVA_00518 0.60 -0.2 17,172 - BACOVA_00518 0.60 +0.1 17,172 - BACOVA_00518 0.60 -0.9 17,227 + BACOVA_00518 0.64 -0.1 17,323 - BACOVA_00518 0.69 -1.0 17,421 - BACOVA_00518 0.75 +0.3 17,445 - BACOVA_00518 0.77 -3.1 17,453 + BACOVA_00518 0.77 -1.0 17,480 - BACOVA_00518 0.79 +0.6 17,534 + BACOVA_00518 0.82 +0.0 17,535 - BACOVA_00518 0.82 -1.0 17,602 + BACOVA_00518 0.86 -0.2 17,818 + -3.1 17,818 + -2.6 17,819 - -2.6 17,820 + -1.3 17,820 + -1.0 17,820 + -0.7 17,835 + -0.1 17,836 - +0.3 17,837 + -0.3 17,837 + -0.7 17,917 - -0.5 17,928 + +1.4 17,929 - +0.9 17,943 + -0.4 17,950 + +0.3 17,984 + -0.1 17,987 + -0.1 17,988 - +0.1 18,007 + +0.2 18,145 + BACOVA_00519 0.11 -1.6 18,164 + BACOVA_00519 0.16 +0.2 18,165 - BACOVA_00519 0.16 -1.3 18,165 - BACOVA_00519 0.16 -1.2 18,167 - BACOVA_00519 0.16 -0.4 18,201 - BACOVA_00519 0.24 -1.0 18,207 + BACOVA_00519 0.25 +0.3 18,207 + BACOVA_00519 0.25 -0.7 18,208 - BACOVA_00519 0.26 -0.9 18,228 - BACOVA_00519 0.30 +0.3 18,254 + BACOVA_00519 0.36 -1.9 18,260 + BACOVA_00519 0.37 +1.1 18,285 - BACOVA_00519 0.43 -2.2 18,296 - BACOVA_00519 0.45 -0.7 18,297 + BACOVA_00519 0.46 +0.0 18,347 + BACOVA_00519 0.57 +0.3 18,347 + BACOVA_00519 0.57 +0.5 18,351 + BACOVA_00519 0.58 -2.4 18,375 + BACOVA_00519 0.63 -0.8 18,385 - BACOVA_00519 0.66 -0.8 18,412 - BACOVA_00519 0.72 +0.4 18,413 + BACOVA_00519 0.72 -1.0 18,413 + BACOVA_00519 0.72 -0.6 18,414 - BACOVA_00519 0.72 -0.2 18,490 + BACOVA_00519 0.89 -1.3 18,492 + BACOVA_00519 0.90 -1.3 18,498 + +1.4 18,520 - +0.1 18,520 - +0.2 18,591 - -1.4 18,601 + -0.4 18,660 - -0.8 18,841 - -1.3 18,844 - -0.3 18,866 - -0.5 18,873 + +1.3 18,953 + BACOVA_00520 0.13 -0.2 18,954 - BACOVA_00520 0.13 -0.4 19,031 + BACOVA_00520 0.18 +1.0 19,039 + BACOVA_00520 0.18 +0.0 19,042 + BACOVA_00520 0.18 -0.3 19,089 + BACOVA_00520 0.21 -0.1 19,131 + BACOVA_00520 0.24 -1.0 19,146 + BACOVA_00520 0.25 -0.4 19,147 - BACOVA_00520 0.25 +1.5 19,148 + BACOVA_00520 0.25 +0.4 19,148 + BACOVA_00520 0.25 -0.7 19,149 - BACOVA_00520 0.25 +0.3 19,149 - BACOVA_00520 0.25 -0.1 19,166 - BACOVA_00520 0.26 -2.9 19,242 + BACOVA_00520 0.31 +0.6 19,292 + BACOVA_00520 0.34 -0.7 19,330 - BACOVA_00520 0.37 -0.1 19,372 - BACOVA_00520 0.39 -0.7 19,372 - BACOVA_00520 0.39 +0.7 19,373 + BACOVA_00520 0.39 +1.2 19,383 + BACOVA_00520 0.40 -0.1 19,404 + BACOVA_00520 0.41 +0.1 19,405 - BACOVA_00520 0.41 +0.9 19,408 + BACOVA_00520 0.42 +0.0 19,409 - BACOVA_00520 0.42 -0.5 19,418 - BACOVA_00520 0.42 +0.1 19,442 - BACOVA_00520 0.44 +1.2 19,464 - BACOVA_00520 0.45 +0.0 19,465 + BACOVA_00520 0.45 +0.2 19,465 + BACOVA_00520 0.45 +0.8 19,465 + BACOVA_00520 0.45 +1.2 19,465 + BACOVA_00520 0.45 +1.0 19,466 - BACOVA_00520 0.45 +0.2 19,466 - BACOVA_00520 0.45 +0.9 19,500 - BACOVA_00520 0.47 +0.9 19,501 + BACOVA_00520 0.48 -0.6 19,501 + BACOVA_00520 0.48 +0.3 19,503 + BACOVA_00520 0.48 +1.7 19,504 - BACOVA_00520 0.48 +1.7 19,504 - BACOVA_00520 0.48 -1.0
Or see this region's nucleotide sequence