Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00744

Experiment: T4 MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00742 and OHPLBJKB_00743 are separated by 3 nucleotidesOHPLBJKB_00743 and OHPLBJKB_00744 overlap by 4 nucleotidesOHPLBJKB_00744 and OHPLBJKB_00745 overlap by 4 nucleotidesOHPLBJKB_00745 and OHPLBJKB_00746 overlap by 4 nucleotides OHPLBJKB_00742: OHPLBJKB_00742 - Type II secretion system protein G, at 766,713 to 767,168 _00742 OHPLBJKB_00743: OHPLBJKB_00743 - Type II secretion system protein H, at 767,172 to 767,735 _00743 OHPLBJKB_00744: OHPLBJKB_00744 - hypothetical protein, at 767,732 to 768,103 _00744 OHPLBJKB_00745: OHPLBJKB_00745 - Type II secretion system protein J, at 768,100 to 768,705 _00745 OHPLBJKB_00746: OHPLBJKB_00746 - Putative type II secretion system protein K, at 768,702 to 769,679 _00746 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1at 766.895 kb on + strand, within OHPLBJKB_00742at 766.895 kb on + strand, within OHPLBJKB_00742at 766.899 kb on + strand, within OHPLBJKB_00742at 766.900 kb on - strand, within OHPLBJKB_00742at 766.900 kb on - strand, within OHPLBJKB_00742at 766.985 kb on + strand, within OHPLBJKB_00742at 766.989 kb on + strand, within OHPLBJKB_00742at 766.989 kb on + strand, within OHPLBJKB_00742at 766.989 kb on + strand, within OHPLBJKB_00742at 766.990 kb on - strand, within OHPLBJKB_00742at 766.990 kb on - strand, within OHPLBJKB_00742at 767.004 kb on + strand, within OHPLBJKB_00742at 767.004 kb on + strand, within OHPLBJKB_00742at 767.004 kb on + strand, within OHPLBJKB_00742at 767.005 kb on - strand, within OHPLBJKB_00742at 767.086 kb on - strand, within OHPLBJKB_00742at 767.249 kb on - strand, within OHPLBJKB_00743at 767.479 kb on + strand, within OHPLBJKB_00743at 767.495 kb on + strand, within OHPLBJKB_00743at 767.512 kb on - strand, within OHPLBJKB_00743at 767.646 kb on + strand, within OHPLBJKB_00743at 767.647 kb on - strand, within OHPLBJKB_00743at 767.747 kb on - strandat 767.898 kb on - strand, within OHPLBJKB_00744at 767.990 kb on - strand, within OHPLBJKB_00744at 768.080 kb on - strandat 768.243 kb on - strand, within OHPLBJKB_00745at 768.423 kb on + strand, within OHPLBJKB_00745at 768.423 kb on + strand, within OHPLBJKB_00745at 768.572 kb on - strand, within OHPLBJKB_00745at 768.608 kb on + strand, within OHPLBJKB_00745at 768.698 kb on + strandat 768.698 kb on + strandat 768.699 kb on - strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.764 kb on + strandat 768.765 kb on - strandat 768.855 kb on + strand, within OHPLBJKB_00746

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Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI10
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766,895 + OHPLBJKB_00742 0.40 +0.3
766,895 + OHPLBJKB_00742 0.40 -0.8
766,899 + OHPLBJKB_00742 0.41 +0.9
766,900 - OHPLBJKB_00742 0.41 +0.3
766,900 - OHPLBJKB_00742 0.41 -0.8
766,985 + OHPLBJKB_00742 0.60 +0.3
766,989 + OHPLBJKB_00742 0.61 -0.1
766,989 + OHPLBJKB_00742 0.61 -0.4
766,989 + OHPLBJKB_00742 0.61 +0.5
766,990 - OHPLBJKB_00742 0.61 -0.7
766,990 - OHPLBJKB_00742 0.61 -0.2
767,004 + OHPLBJKB_00742 0.64 -0.2
767,004 + OHPLBJKB_00742 0.64 -0.4
767,004 + OHPLBJKB_00742 0.64 +0.5
767,005 - OHPLBJKB_00742 0.64 -0.0
767,086 - OHPLBJKB_00742 0.82 +0.5
767,249 - OHPLBJKB_00743 0.14 +0.2
767,479 + OHPLBJKB_00743 0.54 -1.7
767,495 + OHPLBJKB_00743 0.57 +0.0
767,512 - OHPLBJKB_00743 0.60 +0.3
767,646 + OHPLBJKB_00743 0.84 -0.2
767,647 - OHPLBJKB_00743 0.84 +0.6
767,747 - -0.0
767,898 - OHPLBJKB_00744 0.45 +0.8
767,990 - OHPLBJKB_00744 0.69 +0.4
768,080 - -2.0
768,243 - OHPLBJKB_00745 0.24 +0.6
768,423 + OHPLBJKB_00745 0.53 +0.4
768,423 + OHPLBJKB_00745 0.53 -0.6
768,572 - OHPLBJKB_00745 0.78 +0.2
768,608 + OHPLBJKB_00745 0.84 +0.7
768,698 + +0.3
768,698 + -0.3
768,699 - -0.8
768,764 + -0.0
768,764 + -0.3
768,764 + -0.3
768,764 + -2.3
768,764 + +0.4
768,765 - +0.0
768,855 + OHPLBJKB_00746 0.16 -1.3

Or see this region's nucleotide sequence