Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00366

Experiment: T4 MOI10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00365 and OHPLBJKB_00366 are separated by 168 nucleotidesOHPLBJKB_00366 and OHPLBJKB_00367 are separated by 71 nucleotidesOHPLBJKB_00367 and OHPLBJKB_00368 are separated by 28 nucleotides OHPLBJKB_00365: OHPLBJKB_00365 - putative bifunctional chitinase/lysozyme, at 396,705 to 399,398 _00365 OHPLBJKB_00366: OHPLBJKB_00366 - Bacterioferritin-associated ferredoxin, at 399,567 to 399,761 _00366 OHPLBJKB_00367: OHPLBJKB_00367 - Bacterioferritin, at 399,833 to 400,309 _00367 OHPLBJKB_00368: OHPLBJKB_00368 - Type 4 prepilin-like proteins leader peptide-processing enzyme, at 400,338 to 401,015 _00368 Position (kb) 399 400Strain fitness (log2 ratio) -2 -1 0 1at 398.616 kb on - strand, within OHPLBJKB_00365at 398.625 kb on + strand, within OHPLBJKB_00365at 398.626 kb on - strand, within OHPLBJKB_00365at 398.731 kb on + strand, within OHPLBJKB_00365at 398.732 kb on - strand, within OHPLBJKB_00365at 398.751 kb on + strand, within OHPLBJKB_00365at 398.752 kb on - strand, within OHPLBJKB_00365at 398.752 kb on - strand, within OHPLBJKB_00365at 398.752 kb on - strand, within OHPLBJKB_00365at 398.754 kb on + strand, within OHPLBJKB_00365at 398.831 kb on + strand, within OHPLBJKB_00365at 398.831 kb on + strand, within OHPLBJKB_00365at 398.831 kb on + strand, within OHPLBJKB_00365at 398.831 kb on + strand, within OHPLBJKB_00365at 398.832 kb on - strand, within OHPLBJKB_00365at 398.832 kb on - strand, within OHPLBJKB_00365at 398.832 kb on - strand, within OHPLBJKB_00365at 398.844 kb on - strand, within OHPLBJKB_00365at 398.870 kb on + strand, within OHPLBJKB_00365at 398.894 kb on + strand, within OHPLBJKB_00365at 398.894 kb on + strand, within OHPLBJKB_00365at 398.894 kb on + strand, within OHPLBJKB_00365at 398.901 kb on - strand, within OHPLBJKB_00365at 398.908 kb on - strand, within OHPLBJKB_00365at 399.018 kb on + strand, within OHPLBJKB_00365at 399.048 kb on - strand, within OHPLBJKB_00365at 399.071 kb on + strand, within OHPLBJKB_00365at 399.071 kb on + strand, within OHPLBJKB_00365at 399.071 kb on + strand, within OHPLBJKB_00365at 399.071 kb on + strand, within OHPLBJKB_00365at 399.155 kb on + strandat 399.155 kb on + strandat 399.156 kb on - strandat 399.156 kb on - strandat 399.210 kb on + strandat 399.210 kb on + strandat 399.210 kb on + strandat 399.210 kb on + strandat 399.211 kb on - strandat 399.211 kb on - strandat 399.211 kb on - strandat 399.211 kb on - strandat 399.211 kb on - strandat 399.211 kb on - strandat 399.254 kb on + strandat 399.357 kb on + strandat 399.358 kb on - strandat 399.358 kb on - strandat 399.387 kb on - strandat 399.389 kb on + strandat 399.396 kb on + strandat 399.397 kb on - strandat 399.464 kb on + strandat 399.476 kb on + strandat 399.476 kb on + strandat 399.477 kb on - strandat 399.520 kb on + strandat 399.552 kb on + strandat 399.553 kb on - strandat 399.566 kb on + strandat 399.566 kb on + strandat 399.570 kb on + strandat 399.570 kb on + strandat 399.570 kb on + strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.571 kb on - strandat 399.584 kb on + strandat 399.584 kb on + strandat 399.584 kb on + strandat 399.585 kb on - strandat 399.727 kb on + strand, within OHPLBJKB_00366at 399.727 kb on + strand, within OHPLBJKB_00366at 399.727 kb on + strand, within OHPLBJKB_00366at 399.727 kb on + strand, within OHPLBJKB_00366at 399.782 kb on + strandat 399.798 kb on + strandat 399.847 kb on + strandat 399.847 kb on + strandat 399.848 kb on - strandat 399.855 kb on + strandat 399.855 kb on + strandat 399.856 kb on - strandat 399.860 kb on + strandat 399.929 kb on - strand, within OHPLBJKB_00367at 400.004 kb on + strand, within OHPLBJKB_00367at 400.006 kb on + strand, within OHPLBJKB_00367at 400.006 kb on + strand, within OHPLBJKB_00367at 400.006 kb on + strand, within OHPLBJKB_00367at 400.007 kb on - strand, within OHPLBJKB_00367at 400.007 kb on - strand, within OHPLBJKB_00367at 400.007 kb on - strand, within OHPLBJKB_00367at 400.044 kb on + strand, within OHPLBJKB_00367at 400.045 kb on - strand, within OHPLBJKB_00367at 400.151 kb on + strand, within OHPLBJKB_00367at 400.173 kb on - strand, within OHPLBJKB_00367at 400.339 kb on + strandat 400.342 kb on + strandat 400.342 kb on + strandat 400.360 kb on + strandat 400.371 kb on + strandat 400.372 kb on - strandat 400.372 kb on - strandat 400.418 kb on + strand, within OHPLBJKB_00368at 400.418 kb on + strand, within OHPLBJKB_00368at 400.418 kb on + strand, within OHPLBJKB_00368at 400.419 kb on - strand, within OHPLBJKB_00368at 400.419 kb on - strand, within OHPLBJKB_00368at 400.419 kb on - strand, within OHPLBJKB_00368at 400.485 kb on + strand, within OHPLBJKB_00368at 400.485 kb on + strand, within OHPLBJKB_00368at 400.486 kb on - strand, within OHPLBJKB_00368at 400.644 kb on + strand, within OHPLBJKB_00368at 400.645 kb on - strand, within OHPLBJKB_00368at 400.653 kb on + strand, within OHPLBJKB_00368at 400.653 kb on + strand, within OHPLBJKB_00368at 400.654 kb on - strand, within OHPLBJKB_00368at 400.654 kb on - strand, within OHPLBJKB_00368at 400.654 kb on - strand, within OHPLBJKB_00368at 400.675 kb on - strand, within OHPLBJKB_00368at 400.699 kb on - strand, within OHPLBJKB_00368at 400.756 kb on - strand, within OHPLBJKB_00368

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T4 MOI10
remove
398,616 - OHPLBJKB_00365 0.71 -0.4
398,625 + OHPLBJKB_00365 0.71 +0.3
398,626 - OHPLBJKB_00365 0.71 -0.5
398,731 + OHPLBJKB_00365 0.75 +0.2
398,732 - OHPLBJKB_00365 0.75 -1.0
398,751 + OHPLBJKB_00365 0.76 +0.8
398,752 - OHPLBJKB_00365 0.76 -0.2
398,752 - OHPLBJKB_00365 0.76 +0.4
398,752 - OHPLBJKB_00365 0.76 -0.4
398,754 + OHPLBJKB_00365 0.76 +0.5
398,831 + OHPLBJKB_00365 0.79 -0.2
398,831 + OHPLBJKB_00365 0.79 +0.1
398,831 + OHPLBJKB_00365 0.79 +1.1
398,831 + OHPLBJKB_00365 0.79 +0.5
398,832 - OHPLBJKB_00365 0.79 +0.4
398,832 - OHPLBJKB_00365 0.79 -0.1
398,832 - OHPLBJKB_00365 0.79 +0.5
398,844 - OHPLBJKB_00365 0.79 +1.1
398,870 + OHPLBJKB_00365 0.80 +0.3
398,894 + OHPLBJKB_00365 0.81 -0.1
398,894 + OHPLBJKB_00365 0.81 -0.0
398,894 + OHPLBJKB_00365 0.81 -0.1
398,901 - OHPLBJKB_00365 0.82 -0.4
398,908 - OHPLBJKB_00365 0.82 +0.3
399,018 + OHPLBJKB_00365 0.86 +0.3
399,048 - OHPLBJKB_00365 0.87 +0.0
399,071 + OHPLBJKB_00365 0.88 +0.4
399,071 + OHPLBJKB_00365 0.88 +0.8
399,071 + OHPLBJKB_00365 0.88 +0.7
399,071 + OHPLBJKB_00365 0.88 -0.4
399,155 + -0.6
399,155 + +0.2
399,156 - -0.9
399,156 - +0.3
399,210 + +0.4
399,210 + -0.3
399,210 + -0.9
399,210 + +0.5
399,211 - -0.0
399,211 - -0.4
399,211 - +0.1
399,211 - -1.5
399,211 - -1.0
399,211 - +0.7
399,254 + +0.3
399,357 + +0.6
399,358 - +0.1
399,358 - +0.0
399,387 - -0.1
399,389 + -0.1
399,396 + -0.4
399,397 - -0.1
399,464 + -1.8
399,476 + +0.7
399,476 + +0.0
399,477 - -1.3
399,520 + -0.2
399,552 + -0.4
399,553 - +0.2
399,566 + +0.2
399,566 + +0.1
399,570 + -0.4
399,570 + -0.1
399,570 + +0.6
399,571 - -0.4
399,571 - -0.8
399,571 - -0.5
399,571 - -0.5
399,571 - -0.2
399,571 - -0.6
399,571 - +0.1
399,571 - -0.3
399,571 - -1.6
399,571 - +0.8
399,571 - +0.2
399,571 - +0.0
399,571 - -0.1
399,584 + -0.8
399,584 + -0.9
399,584 + -0.7
399,585 - +0.9
399,727 + OHPLBJKB_00366 0.82 +1.0
399,727 + OHPLBJKB_00366 0.82 +0.3
399,727 + OHPLBJKB_00366 0.82 -0.6
399,727 + OHPLBJKB_00366 0.82 +0.2
399,782 + -0.6
399,798 + -0.1
399,847 + -0.6
399,847 + +0.2
399,848 - -0.8
399,855 + +0.3
399,855 + +0.7
399,856 - +0.3
399,860 + -1.0
399,929 - OHPLBJKB_00367 0.20 +0.7
400,004 + OHPLBJKB_00367 0.36 -0.2
400,006 + OHPLBJKB_00367 0.36 -0.7
400,006 + OHPLBJKB_00367 0.36 -0.1
400,006 + OHPLBJKB_00367 0.36 -1.4
400,007 - OHPLBJKB_00367 0.36 +0.2
400,007 - OHPLBJKB_00367 0.36 -0.1
400,007 - OHPLBJKB_00367 0.36 -0.7
400,044 + OHPLBJKB_00367 0.44 -0.4
400,045 - OHPLBJKB_00367 0.44 -0.7
400,151 + OHPLBJKB_00367 0.67 -0.3
400,173 - OHPLBJKB_00367 0.71 -0.7
400,339 + -0.3
400,342 + -0.3
400,342 + -0.7
400,360 + -0.5
400,371 + -0.0
400,372 - +0.8
400,372 - -0.2
400,418 + OHPLBJKB_00368 0.12 +0.9
400,418 + OHPLBJKB_00368 0.12 -0.4
400,418 + OHPLBJKB_00368 0.12 -0.8
400,419 - OHPLBJKB_00368 0.12 -0.3
400,419 - OHPLBJKB_00368 0.12 -0.2
400,419 - OHPLBJKB_00368 0.12 -0.5
400,485 + OHPLBJKB_00368 0.22 -0.2
400,485 + OHPLBJKB_00368 0.22 +0.1
400,486 - OHPLBJKB_00368 0.22 +0.2
400,644 + OHPLBJKB_00368 0.45 -0.2
400,645 - OHPLBJKB_00368 0.45 -0.9
400,653 + OHPLBJKB_00368 0.46 +1.5
400,653 + OHPLBJKB_00368 0.46 +0.0
400,654 - OHPLBJKB_00368 0.47 -0.8
400,654 - OHPLBJKB_00368 0.47 -0.1
400,654 - OHPLBJKB_00368 0.47 +0.3
400,675 - OHPLBJKB_00368 0.50 -0.3
400,699 - OHPLBJKB_00368 0.53 -1.2
400,756 - OHPLBJKB_00368 0.62 -0.8

Or see this region's nucleotide sequence