Experiment: Pullulan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05169 and BACOVA_05170 overlap by 97 nucleotides BACOVA_05170 and BACOVA_05171 are separated by 140 nucleotides BACOVA_05171 and BACOVA_05172 are separated by 65 nucleotides
BACOVA_05169: BACOVA_05169 - hypothetical protein, at 655,261 to 656,244
_05169
BACOVA_05170: BACOVA_05170 - hypothetical protein, at 656,148 to 656,315
_05170
BACOVA_05171: BACOVA_05171 - hypothetical protein, at 656,456 to 657,094
_05171
BACOVA_05172: BACOVA_05172 - valine--tRNA ligase, at 657,160 to 659,796
_05172
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 655.478 kb on + strand, within BACOVA_05169 at 655.538 kb on + strand, within BACOVA_05169 at 655.621 kb on - strand, within BACOVA_05169 at 655.624 kb on + strand, within BACOVA_05169 at 655.625 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.650 kb on - strand, within BACOVA_05169 at 655.662 kb on - strand, within BACOVA_05169 at 655.732 kb on + strand, within BACOVA_05169 at 655.810 kb on - strand, within BACOVA_05169 at 655.849 kb on + strand, within BACOVA_05169 at 655.894 kb on + strand, within BACOVA_05169 at 655.895 kb on - strand, within BACOVA_05169 at 655.905 kb on + strand, within BACOVA_05169 at 655.906 kb on - strand, within BACOVA_05169 at 655.908 kb on - strand, within BACOVA_05169 at 655.944 kb on - strand, within BACOVA_05169 at 655.950 kb on + strand, within BACOVA_05169 at 655.951 kb on + strand, within BACOVA_05169 at 655.991 kb on + strand, within BACOVA_05169 at 656.012 kb on + strand, within BACOVA_05169 at 656.020 kb on + strand, within BACOVA_05169 at 656.021 kb on - strand, within BACOVA_05169 at 656.024 kb on + strand, within BACOVA_05169 at 656.024 kb on + strand, within BACOVA_05169 at 656.082 kb on + strand, within BACOVA_05169 at 656.097 kb on - strand, within BACOVA_05169 at 656.097 kb on - strand, within BACOVA_05169 at 656.109 kb on + strand, within BACOVA_05169 at 656.127 kb on + strand, within BACOVA_05169 at 656.127 kb on + strand, within BACOVA_05169 at 656.128 kb on - strand, within BACOVA_05169 at 656.128 kb on - strand, within BACOVA_05169 at 656.137 kb on - strand, within BACOVA_05169 at 656.137 kb on - strand, within BACOVA_05169 at 656.140 kb on + strand, within BACOVA_05169 at 656.141 kb on - strand, within BACOVA_05169 at 656.141 kb on - strand, within BACOVA_05169 at 656.164 kb on + strand at 656.204 kb on - strand at 656.219 kb on - strand at 656.284 kb on - strand, within BACOVA_05170 at 656.340 kb on + strand at 656.379 kb on - strand at 656.379 kb on - strand at 656.411 kb on - strand at 656.418 kb on - strand at 656.419 kb on + strand at 656.420 kb on - strand at 656.461 kb on + strand at 656.521 kb on + strand, within BACOVA_05171 at 656.542 kb on + strand, within BACOVA_05171 at 656.543 kb on - strand, within BACOVA_05171 at 656.697 kb on - strand, within BACOVA_05171 at 656.713 kb on + strand, within BACOVA_05171 at 656.742 kb on + strand, within BACOVA_05171 at 656.743 kb on - strand, within BACOVA_05171 at 656.773 kb on + strand, within BACOVA_05171 at 656.830 kb on - strand, within BACOVA_05171 at 656.849 kb on - strand, within BACOVA_05171 at 656.862 kb on + strand, within BACOVA_05171 at 656.867 kb on + strand, within BACOVA_05171 at 656.872 kb on + strand, within BACOVA_05171 at 656.872 kb on + strand, within BACOVA_05171 at 656.873 kb on - strand, within BACOVA_05171 at 656.912 kb on - strand, within BACOVA_05171 at 656.958 kb on + strand, within BACOVA_05171 at 656.958 kb on + strand, within BACOVA_05171 at 656.958 kb on + strand, within BACOVA_05171 at 656.973 kb on + strand, within BACOVA_05171 at 657.047 kb on - strand at 657.047 kb on - strand at 657.126 kb on + strand at 657.133 kb on + strand at 657.133 kb on + strand at 657.133 kb on + strand at 657.143 kb on + strand at 657.143 kb on + strand at 657.143 kb on + strand at 657.143 kb on + strand at 657.145 kb on + strand at 657.145 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C) remove 655,478 + BACOVA_05169 0.22 +1.1 655,538 + BACOVA_05169 0.28 +1.0 655,621 - BACOVA_05169 0.37 +0.1 655,624 + BACOVA_05169 0.37 -0.2 655,625 - BACOVA_05169 0.37 +1.6 655,650 - BACOVA_05169 0.40 +0.9 655,650 - BACOVA_05169 0.40 +1.6 655,650 - BACOVA_05169 0.40 -0.9 655,662 - BACOVA_05169 0.41 -0.1 655,732 + BACOVA_05169 0.48 -1.2 655,810 - BACOVA_05169 0.56 +1.6 655,849 + BACOVA_05169 0.60 +0.6 655,894 + BACOVA_05169 0.64 -0.2 655,895 - BACOVA_05169 0.64 +0.6 655,905 + BACOVA_05169 0.65 -1.4 655,906 - BACOVA_05169 0.66 +0.2 655,908 - BACOVA_05169 0.66 -2.8 655,944 - BACOVA_05169 0.69 -0.3 655,950 + BACOVA_05169 0.70 +3.4 655,951 + BACOVA_05169 0.70 -1.9 655,991 + BACOVA_05169 0.74 -2.9 656,012 + BACOVA_05169 0.76 +0.1 656,020 + BACOVA_05169 0.77 -1.6 656,021 - BACOVA_05169 0.77 +1.2 656,024 + BACOVA_05169 0.78 +2.4 656,024 + BACOVA_05169 0.78 -0.8 656,082 + BACOVA_05169 0.83 +0.7 656,097 - BACOVA_05169 0.85 -0.8 656,097 - BACOVA_05169 0.85 -2.4 656,109 + BACOVA_05169 0.86 +0.6 656,127 + BACOVA_05169 0.88 -3.4 656,127 + BACOVA_05169 0.88 +0.6 656,128 - BACOVA_05169 0.88 +3.6 656,128 - BACOVA_05169 0.88 -0.8 656,137 - BACOVA_05169 0.89 -2.2 656,137 - BACOVA_05169 0.89 +0.4 656,140 + BACOVA_05169 0.89 +0.4 656,141 - BACOVA_05169 0.89 +1.4 656,141 - BACOVA_05169 0.89 -1.5 656,164 + -1.9 656,204 - -0.4 656,219 - +2.6 656,284 - BACOVA_05170 0.81 +1.3 656,340 + -0.4 656,379 - -1.5 656,379 - -0.2 656,411 - -0.2 656,418 - +0.9 656,419 + -1.0 656,420 - -0.0 656,461 + -1.3 656,521 + BACOVA_05171 0.10 +0.6 656,542 + BACOVA_05171 0.13 -0.4 656,543 - BACOVA_05171 0.14 -2.4 656,697 - BACOVA_05171 0.38 +0.6 656,713 + BACOVA_05171 0.40 -0.2 656,742 + BACOVA_05171 0.45 +0.7 656,743 - BACOVA_05171 0.45 -0.9 656,773 + BACOVA_05171 0.50 +0.1 656,830 - BACOVA_05171 0.59 +0.9 656,849 - BACOVA_05171 0.62 +2.5 656,862 + BACOVA_05171 0.64 +1.5 656,867 + BACOVA_05171 0.64 +1.8 656,872 + BACOVA_05171 0.65 -2.0 656,872 + BACOVA_05171 0.65 -0.2 656,873 - BACOVA_05171 0.65 +1.2 656,912 - BACOVA_05171 0.71 -2.2 656,958 + BACOVA_05171 0.79 -0.8 656,958 + BACOVA_05171 0.79 +0.4 656,958 + BACOVA_05171 0.79 -3.0 656,973 + BACOVA_05171 0.81 +0.7 657,047 - +0.1 657,047 - -1.3 657,126 + +1.1 657,133 + +2.9 657,133 + -2.5 657,133 + +0.8 657,143 + -0.3 657,143 + -0.9 657,143 + -0.1 657,143 + -1.2 657,145 + -1.7 657,145 + -0.3
Or see this region's nucleotide sequence