Experiment: Pullulan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04965 and BACOVA_04966 are separated by 80 nucleotides BACOVA_04966 and BACOVA_04967 are separated by 181 nucleotides
BACOVA_04965: BACOVA_04965 - SusD family protein, at 406,991 to 408,712
_04965
BACOVA_04966: BACOVA_04966 - FG-GAP repeat protein, at 408,793 to 410,877
_04966
BACOVA_04967: BACOVA_04967 - hypothetical protein, at 411,059 to 414,457
_04967
Position (kb) 408
409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 407.831 kb on + strand, within BACOVA_04965 at 407.858 kb on + strand, within BACOVA_04965 at 407.903 kb on - strand, within BACOVA_04965 at 407.905 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 407.929 kb on + strand, within BACOVA_04965 at 408.038 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.042 kb on - strand, within BACOVA_04965 at 408.062 kb on + strand, within BACOVA_04965 at 408.064 kb on + strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.125 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.134 kb on - strand, within BACOVA_04965 at 408.153 kb on - strand, within BACOVA_04965 at 408.219 kb on - strand, within BACOVA_04965 at 408.240 kb on + strand, within BACOVA_04965 at 408.241 kb on - strand, within BACOVA_04965 at 408.302 kb on + strand, within BACOVA_04965 at 408.326 kb on + strand, within BACOVA_04965 at 408.327 kb on - strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.328 kb on + strand, within BACOVA_04965 at 408.329 kb on - strand, within BACOVA_04965 at 408.397 kb on - strand, within BACOVA_04965 at 408.478 kb on + strand, within BACOVA_04965 at 408.483 kb on + strand, within BACOVA_04965 at 408.520 kb on - strand, within BACOVA_04965 at 408.575 kb on - strand at 408.592 kb on + strand at 408.592 kb on + strand at 408.596 kb on + strand at 408.596 kb on + strand at 408.597 kb on - strand at 408.597 kb on - strand at 408.599 kb on - strand at 408.599 kb on - strand at 408.603 kb on - strand at 408.603 kb on - strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.637 kb on + strand at 408.638 kb on - strand at 408.638 kb on - strand at 408.644 kb on + strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.737 kb on - strand at 408.743 kb on - strand at 408.747 kb on + strand at 408.747 kb on + strand at 408.805 kb on + strand at 408.806 kb on - strand at 408.807 kb on + strand at 408.807 kb on + strand at 408.809 kb on + strand at 408.809 kb on + strand at 408.810 kb on - strand at 408.839 kb on + strand at 408.954 kb on + strand at 408.958 kb on + strand at 409.028 kb on + strand, within BACOVA_04966 at 409.047 kb on + strand, within BACOVA_04966 at 409.066 kb on + strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.067 kb on - strand, within BACOVA_04966 at 409.069 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.126 kb on - strand, within BACOVA_04966 at 409.154 kb on + strand, within BACOVA_04966 at 409.169 kb on + strand, within BACOVA_04966 at 409.170 kb on - strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.215 kb on + strand, within BACOVA_04966 at 409.221 kb on + strand, within BACOVA_04966 at 409.247 kb on - strand, within BACOVA_04966 at 409.257 kb on + strand, within BACOVA_04966 at 409.258 kb on - strand, within BACOVA_04966 at 409.262 kb on + strand, within BACOVA_04966 at 409.291 kb on - strand, within BACOVA_04966 at 409.295 kb on - strand, within BACOVA_04966 at 409.309 kb on - strand, within BACOVA_04966 at 409.370 kb on - strand, within BACOVA_04966 at 409.470 kb on + strand, within BACOVA_04966 at 409.490 kb on - strand, within BACOVA_04966 at 409.491 kb on + strand, within BACOVA_04966 at 409.500 kb on + strand, within BACOVA_04966 at 409.501 kb on - strand, within BACOVA_04966 at 409.506 kb on - strand, within BACOVA_04966 at 409.530 kb on - strand, within BACOVA_04966 at 409.538 kb on + strand, within BACOVA_04966 at 409.578 kb on + strand, within BACOVA_04966 at 409.588 kb on - strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.597 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.662 kb on + strand, within BACOVA_04966 at 409.668 kb on + strand, within BACOVA_04966 at 409.702 kb on + strand, within BACOVA_04966 at 409.703 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.711 kb on - strand, within BACOVA_04966 at 409.723 kb on + strand, within BACOVA_04966 at 409.755 kb on + strand, within BACOVA_04966 at 409.798 kb on + strand, within BACOVA_04966 at 409.810 kb on + strand, within BACOVA_04966 at 409.876 kb on - strand, within BACOVA_04966 at 409.876 kb on - strand, within BACOVA_04966 at 409.929 kb on + strand, within BACOVA_04966 at 409.935 kb on + strand, within BACOVA_04966 at 409.935 kb on + strand, within BACOVA_04966 at 409.944 kb on + strand, within BACOVA_04966 at 409.945 kb on - strand, within BACOVA_04966 at 409.980 kb on + strand, within BACOVA_04966 at 410.007 kb on + strand, within BACOVA_04966 at 410.098 kb on + strand, within BACOVA_04966 at 410.099 kb on - strand, within BACOVA_04966 at 410.099 kb on - strand, within BACOVA_04966 at 410.114 kb on + strand, within BACOVA_04966 at 410.169 kb on - strand, within BACOVA_04966 at 410.240 kb on - strand, within BACOVA_04966 at 410.343 kb on + strand, within BACOVA_04966 at 410.355 kb on + strand, within BACOVA_04966 at 410.355 kb on + strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.356 kb on - strand, within BACOVA_04966 at 410.419 kb on - strand, within BACOVA_04966 at 410.442 kb on + strand, within BACOVA_04966 at 410.446 kb on + strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.447 kb on - strand, within BACOVA_04966 at 410.452 kb on - strand, within BACOVA_04966 at 410.458 kb on - strand, within BACOVA_04966 at 410.476 kb on + strand, within BACOVA_04966 at 410.483 kb on + strand, within BACOVA_04966 at 410.491 kb on + strand, within BACOVA_04966 at 410.545 kb on + strand, within BACOVA_04966 at 410.546 kb on - strand, within BACOVA_04966 at 410.578 kb on - strand, within BACOVA_04966 at 410.622 kb on + strand, within BACOVA_04966 at 410.628 kb on + strand, within BACOVA_04966 at 410.629 kb on - strand, within BACOVA_04966 at 410.629 kb on - strand, within BACOVA_04966 at 410.638 kb on + strand, within BACOVA_04966 at 410.638 kb on + strand, within BACOVA_04966 at 410.651 kb on - strand, within BACOVA_04966 at 410.654 kb on - strand, within BACOVA_04966 at 410.687 kb on + strand at 410.687 kb on + strand at 410.687 kb on + strand at 410.688 kb on - strand at 410.691 kb on - strand at 410.715 kb on + strand at 410.715 kb on + strand at 410.719 kb on + strand at 410.719 kb on + strand at 410.722 kb on - strand at 410.722 kb on - strand at 410.724 kb on - strand at 410.783 kb on - strand at 410.787 kb on + strand at 410.787 kb on + strand at 410.787 kb on + strand at 410.818 kb on - strand at 410.830 kb on - strand at 410.835 kb on - strand at 410.835 kb on - strand at 410.842 kb on + strand at 410.842 kb on + strand at 410.843 kb on - strand at 410.847 kb on - strand at 410.847 kb on - strand at 410.903 kb on + strand at 410.904 kb on - strand at 410.967 kb on - strand at 410.967 kb on - strand at 410.986 kb on + strand at 410.986 kb on + strand at 410.987 kb on - strand at 410.988 kb on + strand at 410.988 kb on + strand at 410.988 kb on + strand at 410.989 kb on - strand at 410.997 kb on + strand at 410.998 kb on - strand at 411.028 kb on - strand at 411.035 kb on + strand at 411.035 kb on + strand at 411.052 kb on + strand at 411.054 kb on + strand at 411.054 kb on + strand at 411.054 kb on + strand at 411.168 kb on + strand at 411.169 kb on - strand at 411.190 kb on + strand at 411.191 kb on - strand at 411.191 kb on - strand at 411.223 kb on - strand at 411.233 kb on - strand at 411.241 kb on + strand at 411.247 kb on - strand at 411.247 kb on - strand at 411.301 kb on - strand at 411.306 kb on + strand at 411.377 kb on - strand at 411.380 kb on - strand at 411.380 kb on - strand at 411.382 kb on - strand at 411.426 kb on - strand, within BACOVA_04967 at 411.440 kb on + strand, within BACOVA_04967 at 411.441 kb on - strand, within BACOVA_04967 at 411.464 kb on + strand, within BACOVA_04967 at 411.465 kb on - strand, within BACOVA_04967 at 411.466 kb on + strand, within BACOVA_04967 at 411.466 kb on + strand, within BACOVA_04967 at 411.472 kb on + strand, within BACOVA_04967 at 411.472 kb on + strand, within BACOVA_04967 at 411.475 kb on + strand, within BACOVA_04967 at 411.491 kb on + strand, within BACOVA_04967 at 411.528 kb on + strand, within BACOVA_04967 at 411.553 kb on + strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.554 kb on - strand, within BACOVA_04967 at 411.598 kb on + strand, within BACOVA_04967 at 411.617 kb on - strand, within BACOVA_04967 at 411.625 kb on + strand, within BACOVA_04967 at 411.626 kb on - strand, within BACOVA_04967 at 411.630 kb on - strand, within BACOVA_04967 at 411.632 kb on + strand, within BACOVA_04967 at 411.632 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.636 kb on + strand, within BACOVA_04967 at 411.637 kb on - strand, within BACOVA_04967 at 411.637 kb on - strand, within BACOVA_04967 at 411.712 kb on - strand, within BACOVA_04967 at 411.767 kb on - strand, within BACOVA_04967 at 411.767 kb on - strand, within BACOVA_04967 at 411.793 kb on + strand, within BACOVA_04967 at 411.846 kb on - strand, within BACOVA_04967 at 411.849 kb on + strand, within BACOVA_04967
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C) remove 407,831 + BACOVA_04965 0.49 -0.4 407,858 + BACOVA_04965 0.50 -0.9 407,903 - BACOVA_04965 0.53 -0.2 407,905 + BACOVA_04965 0.53 -0.5 407,929 + BACOVA_04965 0.54 +1.4 407,929 + BACOVA_04965 0.54 +1.1 408,038 - BACOVA_04965 0.61 -1.1 408,042 - BACOVA_04965 0.61 +1.1 408,042 - BACOVA_04965 0.61 -0.8 408,062 + BACOVA_04965 0.62 -0.8 408,064 + BACOVA_04965 0.62 -1.7 408,125 - BACOVA_04965 0.66 -0.0 408,125 - BACOVA_04965 0.66 -1.9 408,134 - BACOVA_04965 0.66 +0.0 408,134 - BACOVA_04965 0.66 +3.4 408,134 - BACOVA_04965 0.66 +0.8 408,153 - BACOVA_04965 0.67 +0.6 408,219 - BACOVA_04965 0.71 +0.3 408,240 + BACOVA_04965 0.73 -2.0 408,241 - BACOVA_04965 0.73 -0.1 408,302 + BACOVA_04965 0.76 +1.9 408,326 + BACOVA_04965 0.78 -1.2 408,327 - BACOVA_04965 0.78 +1.6 408,328 + BACOVA_04965 0.78 -0.1 408,328 + BACOVA_04965 0.78 -0.7 408,329 - BACOVA_04965 0.78 -0.1 408,397 - BACOVA_04965 0.82 +1.0 408,478 + BACOVA_04965 0.86 -2.7 408,483 + BACOVA_04965 0.87 -1.5 408,520 - BACOVA_04965 0.89 -1.1 408,575 - -2.2 408,592 + -2.2 408,592 + -1.9 408,596 + +0.8 408,596 + +0.0 408,597 - +0.1 408,597 - -2.0 408,599 - +1.2 408,599 - -2.6 408,603 - +2.0 408,603 - -1.8 408,637 + +0.3 408,637 + +0.6 408,637 + -1.5 408,638 - -0.3 408,638 - +0.8 408,644 + +2.2 408,737 - +0.5 408,737 - +0.6 408,737 - -0.4 408,743 - -0.4 408,747 + -0.7 408,747 + +0.7 408,805 + -0.1 408,806 - -1.7 408,807 + +0.2 408,807 + +3.8 408,809 + -2.5 408,809 + -0.3 408,810 - -1.3 408,839 + +4.3 408,954 + +0.9 408,958 + -0.9 409,028 + BACOVA_04966 0.11 -1.3 409,047 + BACOVA_04966 0.12 -1.8 409,066 + BACOVA_04966 0.13 +1.5 409,067 - BACOVA_04966 0.13 -0.5 409,067 - BACOVA_04966 0.13 +2.8 409,069 - BACOVA_04966 0.13 +0.8 409,126 - BACOVA_04966 0.16 +4.3 409,126 - BACOVA_04966 0.16 +1.7 409,154 + BACOVA_04966 0.17 -0.9 409,169 + BACOVA_04966 0.18 -0.0 409,170 - BACOVA_04966 0.18 -1.8 409,215 + BACOVA_04966 0.20 +1.0 409,215 + BACOVA_04966 0.20 -0.7 409,221 + BACOVA_04966 0.21 -1.5 409,247 - BACOVA_04966 0.22 -2.1 409,257 + BACOVA_04966 0.22 +0.5 409,258 - BACOVA_04966 0.22 -1.5 409,262 + BACOVA_04966 0.22 -1.8 409,291 - BACOVA_04966 0.24 -0.9 409,295 - BACOVA_04966 0.24 +2.7 409,309 - BACOVA_04966 0.25 -1.0 409,370 - BACOVA_04966 0.28 +0.0 409,470 + BACOVA_04966 0.32 -2.0 409,490 - BACOVA_04966 0.33 +0.3 409,491 + BACOVA_04966 0.33 -1.5 409,500 + BACOVA_04966 0.34 -1.5 409,501 - BACOVA_04966 0.34 -1.0 409,506 - BACOVA_04966 0.34 -1.0 409,530 - BACOVA_04966 0.35 -1.4 409,538 + BACOVA_04966 0.36 -0.3 409,578 + BACOVA_04966 0.38 -0.5 409,588 - BACOVA_04966 0.38 +0.8 409,597 + BACOVA_04966 0.39 +1.4 409,597 + BACOVA_04966 0.39 -1.2 409,597 + BACOVA_04966 0.39 +0.2 409,662 + BACOVA_04966 0.42 -2.1 409,662 + BACOVA_04966 0.42 +0.3 409,668 + BACOVA_04966 0.42 -0.2 409,702 + BACOVA_04966 0.44 -0.2 409,703 - BACOVA_04966 0.44 +0.8 409,711 - BACOVA_04966 0.44 +1.4 409,711 - BACOVA_04966 0.44 +0.7 409,723 + BACOVA_04966 0.45 -1.6 409,755 + BACOVA_04966 0.46 +0.1 409,798 + BACOVA_04966 0.48 +0.5 409,810 + BACOVA_04966 0.49 -1.2 409,876 - BACOVA_04966 0.52 -1.8 409,876 - BACOVA_04966 0.52 -2.3 409,929 + BACOVA_04966 0.54 -0.7 409,935 + BACOVA_04966 0.55 -0.8 409,935 + BACOVA_04966 0.55 -1.5 409,944 + BACOVA_04966 0.55 -0.2 409,945 - BACOVA_04966 0.55 +0.0 409,980 + BACOVA_04966 0.57 +0.2 410,007 + BACOVA_04966 0.58 +1.3 410,098 + BACOVA_04966 0.63 +0.0 410,099 - BACOVA_04966 0.63 -0.6 410,099 - BACOVA_04966 0.63 +3.3 410,114 + BACOVA_04966 0.63 -2.6 410,169 - BACOVA_04966 0.66 -0.4 410,240 - BACOVA_04966 0.69 -1.8 410,343 + BACOVA_04966 0.74 -1.4 410,355 + BACOVA_04966 0.75 -1.6 410,355 + BACOVA_04966 0.75 -3.3 410,356 - BACOVA_04966 0.75 -0.5 410,356 - BACOVA_04966 0.75 -1.3 410,356 - BACOVA_04966 0.75 +0.6 410,419 - BACOVA_04966 0.78 -0.1 410,442 + BACOVA_04966 0.79 +0.3 410,446 + BACOVA_04966 0.79 -3.0 410,447 - BACOVA_04966 0.79 +1.7 410,447 - BACOVA_04966 0.79 -2.1 410,447 - BACOVA_04966 0.79 +0.7 410,447 - BACOVA_04966 0.79 -0.8 410,452 - BACOVA_04966 0.80 -0.1 410,458 - BACOVA_04966 0.80 -2.9 410,476 + BACOVA_04966 0.81 +0.8 410,483 + BACOVA_04966 0.81 +0.8 410,491 + BACOVA_04966 0.81 +0.0 410,545 + BACOVA_04966 0.84 -0.1 410,546 - BACOVA_04966 0.84 -2.1 410,578 - BACOVA_04966 0.86 -1.1 410,622 + BACOVA_04966 0.88 +0.4 410,628 + BACOVA_04966 0.88 -0.3 410,629 - BACOVA_04966 0.88 +0.2 410,629 - BACOVA_04966 0.88 -2.5 410,638 + BACOVA_04966 0.88 -0.1 410,638 + BACOVA_04966 0.88 +3.5 410,651 - BACOVA_04966 0.89 -0.5 410,654 - BACOVA_04966 0.89 -0.4 410,687 + -3.5 410,687 + -0.9 410,687 + -1.6 410,688 - +1.6 410,691 - -0.5 410,715 + -0.4 410,715 + -2.0 410,719 + -1.7 410,719 + -0.8 410,722 - -0.4 410,722 - -0.7 410,724 - -0.6 410,783 - -0.6 410,787 + +1.4 410,787 + +1.6 410,787 + +0.2 410,818 - +3.3 410,830 - +0.6 410,835 - +2.9 410,835 - +0.4 410,842 + +0.4 410,842 + -2.3 410,843 - +2.1 410,847 - -0.5 410,847 - +1.6 410,903 + -0.0 410,904 - +0.5 410,967 - -0.7 410,967 - -1.8 410,986 + -1.1 410,986 + -1.9 410,987 - +0.6 410,988 + -2.0 410,988 + -2.5 410,988 + -0.5 410,989 - +1.1 410,997 + -0.1 410,998 - +3.0 411,028 - +0.0 411,035 + +3.7 411,035 + -0.8 411,052 + +1.6 411,054 + +3.3 411,054 + -2.3 411,054 + -0.5 411,168 + -0.4 411,169 - -2.1 411,190 + +0.3 411,191 - +4.0 411,191 - -1.6 411,223 - +0.7 411,233 - +4.0 411,241 + -3.1 411,247 - +0.5 411,247 - -0.5 411,301 - +2.3 411,306 + -0.2 411,377 - +0.4 411,380 - -0.3 411,380 - +3.2 411,382 - +1.6 411,426 - BACOVA_04967 0.11 +0.7 411,440 + BACOVA_04967 0.11 -0.2 411,441 - BACOVA_04967 0.11 -0.8 411,464 + BACOVA_04967 0.12 -1.0 411,465 - BACOVA_04967 0.12 -1.7 411,466 + BACOVA_04967 0.12 +1.5 411,466 + BACOVA_04967 0.12 +1.7 411,472 + BACOVA_04967 0.12 -0.6 411,472 + BACOVA_04967 0.12 +0.2 411,475 + BACOVA_04967 0.12 +1.3 411,491 + BACOVA_04967 0.13 +0.4 411,528 + BACOVA_04967 0.14 -2.9 411,553 + BACOVA_04967 0.15 +1.7 411,554 - BACOVA_04967 0.15 +1.4 411,554 - BACOVA_04967 0.15 +0.0 411,554 - BACOVA_04967 0.15 -1.2 411,598 + BACOVA_04967 0.16 -0.6 411,617 - BACOVA_04967 0.16 -0.8 411,625 + BACOVA_04967 0.17 -0.4 411,626 - BACOVA_04967 0.17 +0.9 411,630 - BACOVA_04967 0.17 -0.7 411,632 + BACOVA_04967 0.17 +0.2 411,632 + BACOVA_04967 0.17 -2.8 411,636 + BACOVA_04967 0.17 +1.2 411,636 + BACOVA_04967 0.17 +1.0 411,636 + BACOVA_04967 0.17 -2.4 411,637 - BACOVA_04967 0.17 -0.8 411,637 - BACOVA_04967 0.17 +1.4 411,712 - BACOVA_04967 0.19 +0.2 411,767 - BACOVA_04967 0.21 -2.4 411,767 - BACOVA_04967 0.21 +1.2 411,793 + BACOVA_04967 0.22 +1.4 411,846 - BACOVA_04967 0.23 +1.0 411,849 + BACOVA_04967 0.23 +0.0
Or see this region's nucleotide sequence