Experiment: Pullulan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04611 and BACOVA_04612 are separated by 40 nucleotides BACOVA_04612 and BACOVA_04613 are separated by 5 nucleotides BACOVA_04613 and BACOVA_04614 are separated by 70 nucleotides
BACOVA_04611: BACOVA_04611 - hypothetical protein, at 6,824 to 6,949
_04611
BACOVA_04612: BACOVA_04612 - LytTr DNA-binding domain protein, at 6,990 to 7,784
_04612
BACOVA_04613: BACOVA_04613 - histidine kinase, at 7,790 to 8,857
_04613
BACOVA_04614: BACOVA_04614 - hypothetical protein, at 8,928 to 9,821
_04614
Position (kb)
7
8
9 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 6.793 kb on - strand at 6.793 kb on - strand at 6.793 kb on - strand at 6.794 kb on + strand at 6.801 kb on - strand at 6.801 kb on - strand at 6.809 kb on - strand at 6.809 kb on - strand at 6.809 kb on - strand at 6.816 kb on + strand at 6.817 kb on - strand at 6.836 kb on - strand at 7.041 kb on - strand at 7.075 kb on + strand, within BACOVA_04612 at 7.115 kb on + strand, within BACOVA_04612 at 7.125 kb on - strand, within BACOVA_04612 at 7.191 kb on - strand, within BACOVA_04612 at 7.200 kb on + strand, within BACOVA_04612 at 7.200 kb on + strand, within BACOVA_04612 at 7.201 kb on - strand, within BACOVA_04612 at 7.221 kb on + strand, within BACOVA_04612 at 7.242 kb on + strand, within BACOVA_04612 at 7.262 kb on + strand, within BACOVA_04612 at 7.267 kb on + strand, within BACOVA_04612 at 7.283 kb on + strand, within BACOVA_04612 at 7.283 kb on + strand, within BACOVA_04612 at 7.283 kb on + strand, within BACOVA_04612 at 7.284 kb on - strand, within BACOVA_04612 at 7.284 kb on - strand, within BACOVA_04612 at 7.284 kb on - strand, within BACOVA_04612 at 7.302 kb on + strand, within BACOVA_04612 at 7.340 kb on + strand, within BACOVA_04612 at 7.434 kb on + strand, within BACOVA_04612 at 7.465 kb on - strand, within BACOVA_04612 at 7.465 kb on - strand, within BACOVA_04612 at 7.489 kb on - strand, within BACOVA_04612 at 7.489 kb on - strand, within BACOVA_04612 at 7.491 kb on + strand, within BACOVA_04612 at 7.492 kb on - strand, within BACOVA_04612 at 7.550 kb on - strand, within BACOVA_04612 at 7.568 kb on + strand, within BACOVA_04612 at 7.578 kb on - strand, within BACOVA_04612 at 7.578 kb on - strand, within BACOVA_04612 at 7.588 kb on - strand, within BACOVA_04612 at 7.588 kb on - strand, within BACOVA_04612 at 7.619 kb on + strand, within BACOVA_04612 at 7.679 kb on + strand, within BACOVA_04612 at 7.680 kb on - strand, within BACOVA_04612 at 7.690 kb on - strand, within BACOVA_04612 at 7.716 kb on + strand at 7.717 kb on - strand at 7.767 kb on + strand at 7.768 kb on - strand at 7.769 kb on + strand at 7.853 kb on + strand at 7.870 kb on + strand at 7.884 kb on + strand at 7.885 kb on - strand at 7.991 kb on - strand, within BACOVA_04613 at 8.033 kb on + strand, within BACOVA_04613 at 8.034 kb on - strand, within BACOVA_04613 at 8.087 kb on + strand, within BACOVA_04613 at 8.088 kb on + strand, within BACOVA_04613 at 8.099 kb on + strand, within BACOVA_04613 at 8.099 kb on + strand, within BACOVA_04613 at 8.099 kb on + strand, within BACOVA_04613 at 8.100 kb on - strand, within BACOVA_04613 at 8.100 kb on - strand, within BACOVA_04613 at 8.100 kb on - strand, within BACOVA_04613 at 8.105 kb on + strand, within BACOVA_04613 at 8.150 kb on + strand, within BACOVA_04613 at 8.150 kb on + strand, within BACOVA_04613 at 8.150 kb on + strand, within BACOVA_04613 at 8.150 kb on + strand, within BACOVA_04613 at 8.150 kb on + strand, within BACOVA_04613 at 8.151 kb on - strand, within BACOVA_04613 at 8.152 kb on + strand, within BACOVA_04613 at 8.206 kb on + strand, within BACOVA_04613 at 8.207 kb on - strand, within BACOVA_04613 at 8.207 kb on - strand, within BACOVA_04613 at 8.207 kb on - strand, within BACOVA_04613 at 8.218 kb on + strand, within BACOVA_04613 at 8.219 kb on - strand, within BACOVA_04613 at 8.219 kb on - strand, within BACOVA_04613 at 8.225 kb on + strand, within BACOVA_04613 at 8.226 kb on - strand, within BACOVA_04613 at 8.229 kb on - strand, within BACOVA_04613 at 8.343 kb on - strand, within BACOVA_04613 at 8.396 kb on + strand, within BACOVA_04613 at 8.415 kb on - strand, within BACOVA_04613 at 8.416 kb on + strand, within BACOVA_04613 at 8.417 kb on - strand, within BACOVA_04613 at 8.438 kb on - strand, within BACOVA_04613 at 8.461 kb on + strand, within BACOVA_04613 at 8.462 kb on - strand, within BACOVA_04613 at 8.484 kb on + strand, within BACOVA_04613 at 8.484 kb on + strand, within BACOVA_04613 at 8.492 kb on + strand, within BACOVA_04613 at 8.515 kb on + strand, within BACOVA_04613 at 8.560 kb on + strand, within BACOVA_04613 at 8.663 kb on + strand, within BACOVA_04613 at 8.691 kb on - strand, within BACOVA_04613 at 8.691 kb on - strand, within BACOVA_04613 at 8.762 kb on + strand at 8.763 kb on - strand at 8.822 kb on + strand at 8.822 kb on + strand at 8.825 kb on - strand at 8.825 kb on - strand at 8.826 kb on + strand at 8.830 kb on + strand at 8.830 kb on + strand at 8.831 kb on - strand at 8.857 kb on + strand at 8.857 kb on + strand at 8.858 kb on - strand at 8.875 kb on - strand at 8.886 kb on + strand at 8.961 kb on - strand at 9.002 kb on - strand at 9.002 kb on - strand at 9.002 kb on - strand at 9.004 kb on - strand at 9.004 kb on - strand at 9.117 kb on + strand, within BACOVA_04614 at 9.118 kb on - strand, within BACOVA_04614 at 9.118 kb on - strand, within BACOVA_04614 at 9.118 kb on - strand, within BACOVA_04614 at 9.118 kb on - strand, within BACOVA_04614 at 9.139 kb on + strand, within BACOVA_04614 at 9.143 kb on + strand, within BACOVA_04614 at 9.207 kb on - strand, within BACOVA_04614 at 9.242 kb on - strand, within BACOVA_04614 at 9.279 kb on + strand, within BACOVA_04614 at 9.294 kb on + strand, within BACOVA_04614 at 9.315 kb on + strand, within BACOVA_04614 at 9.377 kb on + strand, within BACOVA_04614 at 9.440 kb on - strand, within BACOVA_04614 at 9.447 kb on + strand, within BACOVA_04614 at 9.528 kb on + strand, within BACOVA_04614 at 9.595 kb on - strand, within BACOVA_04614 at 9.668 kb on + strand, within BACOVA_04614 at 9.708 kb on - strand, within BACOVA_04614 at 9.783 kb on + strand at 9.811 kb on - strand at 9.826 kb on + strand at 9.827 kb on - strand at 9.842 kb on + strand at 9.856 kb on + strand at 9.856 kb on + strand at 9.856 kb on + strand at 9.857 kb on - strand at 9.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C) remove 6,793 - +1.0 6,793 - -1.8 6,793 - +0.7 6,794 + -1.7 6,801 - +2.6 6,801 - -0.2 6,809 - -1.3 6,809 - -1.6 6,809 - +1.4 6,816 + +0.5 6,817 - +0.9 6,836 - -1.6 7,041 - -0.1 7,075 + BACOVA_04612 0.11 -0.7 7,115 + BACOVA_04612 0.16 -1.2 7,125 - BACOVA_04612 0.17 +2.1 7,191 - BACOVA_04612 0.25 -0.2 7,200 + BACOVA_04612 0.26 -0.7 7,200 + BACOVA_04612 0.26 -2.3 7,201 - BACOVA_04612 0.27 +0.6 7,221 + BACOVA_04612 0.29 -0.8 7,242 + BACOVA_04612 0.32 +0.5 7,262 + BACOVA_04612 0.34 -1.8 7,267 + BACOVA_04612 0.35 -1.9 7,283 + BACOVA_04612 0.37 -1.9 7,283 + BACOVA_04612 0.37 -3.1 7,283 + BACOVA_04612 0.37 -0.6 7,284 - BACOVA_04612 0.37 +0.2 7,284 - BACOVA_04612 0.37 -2.5 7,284 - BACOVA_04612 0.37 +1.4 7,302 + BACOVA_04612 0.39 -1.0 7,340 + BACOVA_04612 0.44 -1.3 7,434 + BACOVA_04612 0.56 +0.4 7,465 - BACOVA_04612 0.60 +0.0 7,465 - BACOVA_04612 0.60 -1.3 7,489 - BACOVA_04612 0.63 -1.2 7,489 - BACOVA_04612 0.63 +0.9 7,491 + BACOVA_04612 0.63 -0.9 7,492 - BACOVA_04612 0.63 +1.0 7,550 - BACOVA_04612 0.70 -2.2 7,568 + BACOVA_04612 0.73 -0.5 7,578 - BACOVA_04612 0.74 -3.6 7,578 - BACOVA_04612 0.74 +2.3 7,588 - BACOVA_04612 0.75 -1.0 7,588 - BACOVA_04612 0.75 +0.4 7,619 + BACOVA_04612 0.79 +0.6 7,679 + BACOVA_04612 0.87 -2.2 7,680 - BACOVA_04612 0.87 +0.0 7,690 - BACOVA_04612 0.88 -1.3 7,716 + -2.2 7,717 - +1.5 7,767 + -2.3 7,768 - -2.1 7,769 + -0.6 7,853 + -1.1 7,870 + +1.5 7,884 + +0.3 7,885 - +0.7 7,991 - BACOVA_04613 0.19 -0.7 8,033 + BACOVA_04613 0.23 +0.8 8,034 - BACOVA_04613 0.23 +1.6 8,087 + BACOVA_04613 0.28 +0.8 8,088 + BACOVA_04613 0.28 -1.5 8,099 + BACOVA_04613 0.29 +2.0 8,099 + BACOVA_04613 0.29 -0.3 8,099 + BACOVA_04613 0.29 +1.3 8,100 - BACOVA_04613 0.29 +0.0 8,100 - BACOVA_04613 0.29 -0.6 8,100 - BACOVA_04613 0.29 +3.3 8,105 + BACOVA_04613 0.29 -3.3 8,150 + BACOVA_04613 0.34 -1.9 8,150 + BACOVA_04613 0.34 +1.1 8,150 + BACOVA_04613 0.34 +2.4 8,150 + BACOVA_04613 0.34 -1.0 8,150 + BACOVA_04613 0.34 +0.4 8,151 - BACOVA_04613 0.34 -0.5 8,152 + BACOVA_04613 0.34 -1.0 8,206 + BACOVA_04613 0.39 +0.0 8,207 - BACOVA_04613 0.39 -3.9 8,207 - BACOVA_04613 0.39 +1.8 8,207 - BACOVA_04613 0.39 -0.4 8,218 + BACOVA_04613 0.40 -0.5 8,219 - BACOVA_04613 0.40 -0.2 8,219 - BACOVA_04613 0.40 -0.2 8,225 + BACOVA_04613 0.41 -0.2 8,226 - BACOVA_04613 0.41 +0.6 8,229 - BACOVA_04613 0.41 -0.2 8,343 - BACOVA_04613 0.52 -1.3 8,396 + BACOVA_04613 0.57 -1.5 8,415 - BACOVA_04613 0.59 +1.2 8,416 + BACOVA_04613 0.59 -2.7 8,417 - BACOVA_04613 0.59 +0.9 8,438 - BACOVA_04613 0.61 +0.8 8,461 + BACOVA_04613 0.63 -2.6 8,462 - BACOVA_04613 0.63 -0.5 8,484 + BACOVA_04613 0.65 -0.4 8,484 + BACOVA_04613 0.65 +3.7 8,492 + BACOVA_04613 0.66 -0.6 8,515 + BACOVA_04613 0.68 -0.8 8,560 + BACOVA_04613 0.72 +2.5 8,663 + BACOVA_04613 0.82 +1.0 8,691 - BACOVA_04613 0.84 +1.7 8,691 - BACOVA_04613 0.84 -1.6 8,762 + -0.9 8,763 - -1.6 8,822 + -1.0 8,822 + +0.6 8,825 - -0.7 8,825 - -1.3 8,826 + -2.0 8,830 + +1.3 8,830 + -1.6 8,831 - -0.4 8,857 + -0.6 8,857 + +1.8 8,858 - +3.2 8,875 - -2.8 8,886 + -0.8 8,961 - -1.2 9,002 - -0.5 9,002 - +0.1 9,002 - -0.3 9,004 - +2.3 9,004 - -0.4 9,117 + BACOVA_04614 0.21 -0.7 9,118 - BACOVA_04614 0.21 +1.0 9,118 - BACOVA_04614 0.21 +0.4 9,118 - BACOVA_04614 0.21 -0.6 9,118 - BACOVA_04614 0.21 +0.3 9,139 + BACOVA_04614 0.24 -0.2 9,143 + BACOVA_04614 0.24 +1.8 9,207 - BACOVA_04614 0.31 -1.9 9,242 - BACOVA_04614 0.35 -2.8 9,279 + BACOVA_04614 0.39 -1.5 9,294 + BACOVA_04614 0.41 +0.8 9,315 + BACOVA_04614 0.43 +1.4 9,377 + BACOVA_04614 0.50 +0.8 9,440 - BACOVA_04614 0.57 +0.9 9,447 + BACOVA_04614 0.58 +1.7 9,528 + BACOVA_04614 0.67 -0.2 9,595 - BACOVA_04614 0.75 +0.6 9,668 + BACOVA_04614 0.83 +0.4 9,708 - BACOVA_04614 0.87 -1.1 9,783 + -1.2 9,811 - +0.2 9,826 + +1.9 9,827 - -2.9 9,842 + -0.2 9,856 + -0.8 9,856 + +0.6 9,856 + +0.1 9,857 - -0.5 9,857 - -0.7
Or see this region's nucleotide sequence