Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04421

Experiment: Pullulan 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04419 and BACOVA_04420 are separated by 183 nucleotidesBACOVA_04420 and BACOVA_04421 are separated by 40 nucleotidesBACOVA_04421 and BACOVA_04422 overlap by 20 nucleotidesBACOVA_04422 and BACOVA_04423 overlap by 14 nucleotides BACOVA_04419: BACOVA_04419 - tetratricopeptide repeat protein, at 334,749 to 336,956 _04419 BACOVA_04420: BACOVA_04420 - septum formation protein Maf, at 337,140 to 337,721 _04420 BACOVA_04421: BACOVA_04421 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 337,762 to 338,283 _04421 BACOVA_04422: BACOVA_04422 - NADP oxidoreductase coenzyme F420-dependent, at 338,264 to 339,079 _04422 BACOVA_04423: BACOVA_04423 - hypothetical protein, at 339,066 to 339,401 _04423 Position (kb) 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 336.768 kb on + strandat 336.769 kb on - strandat 336.770 kb on + strandat 336.771 kb on - strandat 336.885 kb on - strandat 336.929 kb on + strandat 336.929 kb on + strandat 336.949 kb on + strandat 336.950 kb on - strandat 336.954 kb on + strandat 336.988 kb on + strandat 336.989 kb on - strandat 336.989 kb on - strandat 337.058 kb on - strandat 337.058 kb on - strandat 337.070 kb on - strandat 337.070 kb on - strandat 337.070 kb on - strandat 337.071 kb on + strandat 337.072 kb on - strandat 337.077 kb on - strandat 337.080 kb on + strandat 337.080 kb on + strandat 337.080 kb on + strandat 337.080 kb on + strandat 337.081 kb on - strandat 337.089 kb on + strandat 337.115 kb on + strandat 337.115 kb on + strandat 337.116 kb on - strandat 337.125 kb on + strandat 337.126 kb on - strandat 337.126 kb on - strandat 337.126 kb on - strandat 337.135 kb on - strandat 337.138 kb on + strandat 337.142 kb on - strandat 337.191 kb on - strandat 337.191 kb on - strandat 337.191 kb on - strandat 337.193 kb on + strandat 337.194 kb on - strandat 337.195 kb on + strandat 337.195 kb on + strandat 337.217 kb on + strand, within BACOVA_04420at 337.218 kb on - strand, within BACOVA_04420at 337.228 kb on + strand, within BACOVA_04420at 337.253 kb on - strand, within BACOVA_04420at 337.294 kb on + strand, within BACOVA_04420at 337.367 kb on + strand, within BACOVA_04420at 337.368 kb on - strand, within BACOVA_04420at 337.485 kb on + strand, within BACOVA_04420at 337.486 kb on - strand, within BACOVA_04420at 337.486 kb on - strand, within BACOVA_04420at 337.491 kb on - strand, within BACOVA_04420at 337.559 kb on + strand, within BACOVA_04420at 337.561 kb on + strand, within BACOVA_04420at 337.561 kb on + strand, within BACOVA_04420at 337.562 kb on - strand, within BACOVA_04420at 337.562 kb on - strand, within BACOVA_04420at 337.582 kb on - strand, within BACOVA_04420at 337.589 kb on + strand, within BACOVA_04420at 337.630 kb on - strand, within BACOVA_04420at 337.633 kb on + strand, within BACOVA_04420at 337.634 kb on - strand, within BACOVA_04420at 337.634 kb on - strand, within BACOVA_04420at 337.634 kb on - strand, within BACOVA_04420at 337.638 kb on + strand, within BACOVA_04420at 337.639 kb on - strand, within BACOVA_04420at 337.639 kb on - strand, within BACOVA_04420at 337.644 kb on + strand, within BACOVA_04420at 337.686 kb on + strandat 337.689 kb on + strandat 337.691 kb on + strandat 337.691 kb on + strandat 337.692 kb on - strandat 337.692 kb on - strandat 337.703 kb on + strandat 337.704 kb on - strandat 337.713 kb on - strandat 337.727 kb on + strandat 337.737 kb on + strandat 337.748 kb on + strandat 337.749 kb on - strandat 337.758 kb on + strandat 337.758 kb on + strandat 337.758 kb on + strandat 339.068 kb on - strandat 339.253 kb on - strand, within BACOVA_04423at 339.253 kb on - strand, within BACOVA_04423at 339.253 kb on - strand, within BACOVA_04423at 339.258 kb on - strand, within BACOVA_04423at 339.258 kb on - strand, within BACOVA_04423at 339.258 kb on - strand, within BACOVA_04423

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C)
remove
336,768 + -0.5
336,769 - +0.6
336,770 + -1.1
336,771 - +1.5
336,885 - -2.0
336,929 + -1.0
336,929 + -0.0
336,949 + -2.1
336,950 - -0.8
336,954 + -0.1
336,988 + +1.4
336,989 - -2.7
336,989 - +0.0
337,058 - -3.1
337,058 - +0.4
337,070 - +1.0
337,070 - -2.4
337,070 - +0.1
337,071 + -1.3
337,072 - +4.5
337,077 - -2.1
337,080 + -0.8
337,080 + -2.4
337,080 + +4.1
337,080 + +0.9
337,081 - +3.1
337,089 + -0.6
337,115 + -1.8
337,115 + -0.8
337,116 - -0.3
337,125 + -0.6
337,126 - +1.8
337,126 - +1.2
337,126 - +0.2
337,135 - -0.3
337,138 + -0.7
337,142 - +0.6
337,191 - -0.4
337,191 - -1.7
337,191 - +0.2
337,193 + -0.7
337,194 - +0.2
337,195 + -0.2
337,195 + +0.1
337,217 + BACOVA_04420 0.13 +1.3
337,218 - BACOVA_04420 0.13 -0.5
337,228 + BACOVA_04420 0.15 -1.3
337,253 - BACOVA_04420 0.19 -0.6
337,294 + BACOVA_04420 0.26 +1.2
337,367 + BACOVA_04420 0.39 -1.2
337,368 - BACOVA_04420 0.39 -0.6
337,485 + BACOVA_04420 0.59 +0.4
337,486 - BACOVA_04420 0.59 -0.2
337,486 - BACOVA_04420 0.59 +1.8
337,491 - BACOVA_04420 0.60 -1.7
337,559 + BACOVA_04420 0.72 +1.4
337,561 + BACOVA_04420 0.72 -0.6
337,561 + BACOVA_04420 0.72 -0.2
337,562 - BACOVA_04420 0.73 +0.9
337,562 - BACOVA_04420 0.73 +0.2
337,582 - BACOVA_04420 0.76 -1.3
337,589 + BACOVA_04420 0.77 -1.7
337,630 - BACOVA_04420 0.84 -1.7
337,633 + BACOVA_04420 0.85 +1.0
337,634 - BACOVA_04420 0.85 -0.1
337,634 - BACOVA_04420 0.85 +2.4
337,634 - BACOVA_04420 0.85 -0.6
337,638 + BACOVA_04420 0.86 -0.8
337,639 - BACOVA_04420 0.86 -0.6
337,639 - BACOVA_04420 0.86 -2.2
337,644 + BACOVA_04420 0.87 -1.1
337,686 + +3.6
337,689 + -1.8
337,691 + +0.7
337,691 + +0.7
337,692 - -1.6
337,692 - +1.1
337,703 + -0.6
337,704 - -1.4
337,713 - -1.6
337,727 + -0.4
337,737 + -0.9
337,748 + -2.1
337,749 - -2.3
337,758 + -0.1
337,758 + -0.6
337,758 + +0.2
339,068 - -0.7
339,253 - BACOVA_04423 0.56 -0.9
339,253 - BACOVA_04423 0.56 +0.2
339,253 - BACOVA_04423 0.56 -2.0
339,258 - BACOVA_04423 0.57 +3.6
339,258 - BACOVA_04423 0.57 +0.3
339,258 - BACOVA_04423 0.57 -1.7

Or see this region's nucleotide sequence