Experiment: Pullulan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04419 and BACOVA_04420 are separated by 183 nucleotides BACOVA_04420 and BACOVA_04421 are separated by 40 nucleotides BACOVA_04421 and BACOVA_04422 overlap by 20 nucleotides BACOVA_04422 and BACOVA_04423 overlap by 14 nucleotides
BACOVA_04419: BACOVA_04419 - tetratricopeptide repeat protein, at 334,749 to 336,956
_04419
BACOVA_04420: BACOVA_04420 - septum formation protein Maf, at 337,140 to 337,721
_04420
BACOVA_04421: BACOVA_04421 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 337,762 to 338,283
_04421
BACOVA_04422: BACOVA_04422 - NADP oxidoreductase coenzyme F420-dependent, at 338,264 to 339,079
_04422
BACOVA_04423: BACOVA_04423 - hypothetical protein, at 339,066 to 339,401
_04423
Position (kb)
337
338
339 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 336.768 kb on + strand at 336.769 kb on - strand at 336.770 kb on + strand at 336.771 kb on - strand at 336.885 kb on - strand at 336.929 kb on + strand at 336.929 kb on + strand at 336.949 kb on + strand at 336.950 kb on - strand at 336.954 kb on + strand at 336.988 kb on + strand at 336.989 kb on - strand at 336.989 kb on - strand at 337.058 kb on - strand at 337.058 kb on - strand at 337.070 kb on - strand at 337.070 kb on - strand at 337.070 kb on - strand at 337.071 kb on + strand at 337.072 kb on - strand at 337.077 kb on - strand at 337.080 kb on + strand at 337.080 kb on + strand at 337.080 kb on + strand at 337.080 kb on + strand at 337.081 kb on - strand at 337.089 kb on + strand at 337.115 kb on + strand at 337.115 kb on + strand at 337.116 kb on - strand at 337.125 kb on + strand at 337.126 kb on - strand at 337.126 kb on - strand at 337.126 kb on - strand at 337.135 kb on - strand at 337.138 kb on + strand at 337.142 kb on - strand at 337.191 kb on - strand at 337.191 kb on - strand at 337.191 kb on - strand at 337.193 kb on + strand at 337.194 kb on - strand at 337.195 kb on + strand at 337.195 kb on + strand at 337.217 kb on + strand, within BACOVA_04420 at 337.218 kb on - strand, within BACOVA_04420 at 337.228 kb on + strand, within BACOVA_04420 at 337.253 kb on - strand, within BACOVA_04420 at 337.294 kb on + strand, within BACOVA_04420 at 337.367 kb on + strand, within BACOVA_04420 at 337.368 kb on - strand, within BACOVA_04420 at 337.485 kb on + strand, within BACOVA_04420 at 337.486 kb on - strand, within BACOVA_04420 at 337.486 kb on - strand, within BACOVA_04420 at 337.491 kb on - strand, within BACOVA_04420 at 337.559 kb on + strand, within BACOVA_04420 at 337.561 kb on + strand, within BACOVA_04420 at 337.561 kb on + strand, within BACOVA_04420 at 337.562 kb on - strand, within BACOVA_04420 at 337.562 kb on - strand, within BACOVA_04420 at 337.582 kb on - strand, within BACOVA_04420 at 337.589 kb on + strand, within BACOVA_04420 at 337.630 kb on - strand, within BACOVA_04420 at 337.633 kb on + strand, within BACOVA_04420 at 337.634 kb on - strand, within BACOVA_04420 at 337.634 kb on - strand, within BACOVA_04420 at 337.634 kb on - strand, within BACOVA_04420 at 337.638 kb on + strand, within BACOVA_04420 at 337.639 kb on - strand, within BACOVA_04420 at 337.639 kb on - strand, within BACOVA_04420 at 337.644 kb on + strand, within BACOVA_04420 at 337.686 kb on + strand at 337.689 kb on + strand at 337.691 kb on + strand at 337.691 kb on + strand at 337.692 kb on - strand at 337.692 kb on - strand at 337.703 kb on + strand at 337.704 kb on - strand at 337.713 kb on - strand at 337.727 kb on + strand at 337.737 kb on + strand at 337.748 kb on + strand at 337.749 kb on - strand at 337.758 kb on + strand at 337.758 kb on + strand at 337.758 kb on + strand at 339.068 kb on - strand at 339.253 kb on - strand, within BACOVA_04423 at 339.253 kb on - strand, within BACOVA_04423 at 339.253 kb on - strand, within BACOVA_04423 at 339.258 kb on - strand, within BACOVA_04423 at 339.258 kb on - strand, within BACOVA_04423 at 339.258 kb on - strand, within BACOVA_04423
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C) remove 336,768 + -0.5 336,769 - +0.6 336,770 + -1.1 336,771 - +1.5 336,885 - -2.0 336,929 + -1.0 336,929 + -0.0 336,949 + -2.1 336,950 - -0.8 336,954 + -0.1 336,988 + +1.4 336,989 - -2.7 336,989 - +0.0 337,058 - -3.1 337,058 - +0.4 337,070 - +1.0 337,070 - -2.4 337,070 - +0.1 337,071 + -1.3 337,072 - +4.5 337,077 - -2.1 337,080 + -0.8 337,080 + -2.4 337,080 + +4.1 337,080 + +0.9 337,081 - +3.1 337,089 + -0.6 337,115 + -1.8 337,115 + -0.8 337,116 - -0.3 337,125 + -0.6 337,126 - +1.8 337,126 - +1.2 337,126 - +0.2 337,135 - -0.3 337,138 + -0.7 337,142 - +0.6 337,191 - -0.4 337,191 - -1.7 337,191 - +0.2 337,193 + -0.7 337,194 - +0.2 337,195 + -0.2 337,195 + +0.1 337,217 + BACOVA_04420 0.13 +1.3 337,218 - BACOVA_04420 0.13 -0.5 337,228 + BACOVA_04420 0.15 -1.3 337,253 - BACOVA_04420 0.19 -0.6 337,294 + BACOVA_04420 0.26 +1.2 337,367 + BACOVA_04420 0.39 -1.2 337,368 - BACOVA_04420 0.39 -0.6 337,485 + BACOVA_04420 0.59 +0.4 337,486 - BACOVA_04420 0.59 -0.2 337,486 - BACOVA_04420 0.59 +1.8 337,491 - BACOVA_04420 0.60 -1.7 337,559 + BACOVA_04420 0.72 +1.4 337,561 + BACOVA_04420 0.72 -0.6 337,561 + BACOVA_04420 0.72 -0.2 337,562 - BACOVA_04420 0.73 +0.9 337,562 - BACOVA_04420 0.73 +0.2 337,582 - BACOVA_04420 0.76 -1.3 337,589 + BACOVA_04420 0.77 -1.7 337,630 - BACOVA_04420 0.84 -1.7 337,633 + BACOVA_04420 0.85 +1.0 337,634 - BACOVA_04420 0.85 -0.1 337,634 - BACOVA_04420 0.85 +2.4 337,634 - BACOVA_04420 0.85 -0.6 337,638 + BACOVA_04420 0.86 -0.8 337,639 - BACOVA_04420 0.86 -0.6 337,639 - BACOVA_04420 0.86 -2.2 337,644 + BACOVA_04420 0.87 -1.1 337,686 + +3.6 337,689 + -1.8 337,691 + +0.7 337,691 + +0.7 337,692 - -1.6 337,692 - +1.1 337,703 + -0.6 337,704 - -1.4 337,713 - -1.6 337,727 + -0.4 337,737 + -0.9 337,748 + -2.1 337,749 - -2.3 337,758 + -0.1 337,758 + -0.6 337,758 + +0.2 339,068 - -0.7 339,253 - BACOVA_04423 0.56 -0.9 339,253 - BACOVA_04423 0.56 +0.2 339,253 - BACOVA_04423 0.56 -2.0 339,258 - BACOVA_04423 0.57 +3.6 339,258 - BACOVA_04423 0.57 +0.3 339,258 - BACOVA_04423 0.57 -1.7
Or see this region's nucleotide sequence