Experiment: Pullulan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03082 and BACOVA_03083 are separated by 13 nucleotides BACOVA_03083 and BACOVA_03084 are separated by 102 nucleotides
BACOVA_03082: BACOVA_03082 - TonB-linked outer membrane protein, SusC/RagA family, at 153,428 to 156,544
_03082
BACOVA_03083: BACOVA_03083 - hypothetical protein, at 156,558 to 158,018
_03083
BACOVA_03084: BACOVA_03084 - GTP-binding protein HflX, at 158,121 to 159,380
_03084
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 155.605 kb on + strand, within BACOVA_03082 at 155.613 kb on - strand, within BACOVA_03082 at 155.617 kb on + strand, within BACOVA_03082 at 155.618 kb on - strand, within BACOVA_03082 at 155.623 kb on + strand, within BACOVA_03082 at 155.624 kb on - strand, within BACOVA_03082 at 155.643 kb on + strand, within BACOVA_03082 at 155.647 kb on + strand, within BACOVA_03082 at 155.648 kb on - strand, within BACOVA_03082 at 155.687 kb on - strand, within BACOVA_03082 at 155.724 kb on + strand, within BACOVA_03082 at 155.794 kb on + strand, within BACOVA_03082 at 155.814 kb on + strand, within BACOVA_03082 at 155.837 kb on - strand, within BACOVA_03082 at 155.862 kb on + strand, within BACOVA_03082 at 155.870 kb on - strand, within BACOVA_03082 at 155.870 kb on - strand, within BACOVA_03082 at 155.879 kb on - strand, within BACOVA_03082 at 155.901 kb on - strand, within BACOVA_03082 at 155.901 kb on - strand, within BACOVA_03082 at 155.945 kb on - strand, within BACOVA_03082 at 155.974 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.997 kb on + strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 155.998 kb on - strand, within BACOVA_03082 at 156.029 kb on - strand, within BACOVA_03082 at 156.034 kb on + strand, within BACOVA_03082 at 156.034 kb on + strand, within BACOVA_03082 at 156.035 kb on - strand, within BACOVA_03082 at 156.035 kb on - strand, within BACOVA_03082 at 156.035 kb on - strand, within BACOVA_03082 at 156.039 kb on - strand, within BACOVA_03082 at 156.039 kb on - strand, within BACOVA_03082 at 156.041 kb on - strand, within BACOVA_03082 at 156.093 kb on - strand, within BACOVA_03082 at 156.106 kb on - strand, within BACOVA_03082 at 156.106 kb on - strand, within BACOVA_03082 at 156.144 kb on + strand, within BACOVA_03082 at 156.145 kb on - strand, within BACOVA_03082 at 156.184 kb on - strand, within BACOVA_03082 at 156.206 kb on + strand, within BACOVA_03082 at 156.207 kb on - strand, within BACOVA_03082 at 156.208 kb on + strand, within BACOVA_03082 at 156.209 kb on - strand, within BACOVA_03082 at 156.214 kb on + strand, within BACOVA_03082 at 156.215 kb on - strand, within BACOVA_03082 at 156.245 kb on + strand at 156.256 kb on + strand at 156.256 kb on - strand at 156.272 kb on - strand at 156.287 kb on - strand at 156.290 kb on + strand at 156.290 kb on + strand at 156.291 kb on - strand at 156.291 kb on - strand at 156.291 kb on - strand at 156.321 kb on + strand at 156.321 kb on + strand at 156.322 kb on - strand at 156.322 kb on - strand at 156.322 kb on - strand at 156.322 kb on - strand at 156.334 kb on + strand at 156.334 kb on + strand at 156.335 kb on - strand at 156.400 kb on + strand at 156.400 kb on + strand at 156.400 kb on + strand at 156.416 kb on - strand at 156.416 kb on - strand at 156.433 kb on + strand at 156.433 kb on + strand at 156.434 kb on - strand at 156.434 kb on - strand at 156.434 kb on - strand at 156.449 kb on - strand at 156.449 kb on - strand at 156.484 kb on - strand at 156.491 kb on - strand at 156.498 kb on + strand at 156.499 kb on - strand at 156.499 kb on - strand at 156.499 kb on - strand at 156.523 kb on + strand at 156.557 kb on + strand at 156.557 kb on + strand at 156.562 kb on + strand at 156.610 kb on + strand at 156.610 kb on + strand at 156.610 kb on + strand at 156.611 kb on - strand at 156.611 kb on - strand at 156.620 kb on + strand at 156.687 kb on - strand at 156.690 kb on + strand at 156.691 kb on - strand at 156.691 kb on - strand at 156.735 kb on + strand, within BACOVA_03083 at 156.736 kb on - strand, within BACOVA_03083 at 156.737 kb on + strand, within BACOVA_03083 at 156.750 kb on - strand, within BACOVA_03083 at 156.808 kb on + strand, within BACOVA_03083 at 156.811 kb on - strand, within BACOVA_03083 at 156.815 kb on + strand, within BACOVA_03083 at 156.816 kb on - strand, within BACOVA_03083 at 156.816 kb on - strand, within BACOVA_03083 at 156.852 kb on + strand, within BACOVA_03083 at 156.872 kb on + strand, within BACOVA_03083 at 156.872 kb on + strand, within BACOVA_03083 at 156.873 kb on - strand, within BACOVA_03083 at 156.884 kb on - strand, within BACOVA_03083 at 156.884 kb on - strand, within BACOVA_03083 at 156.884 kb on - strand, within BACOVA_03083 at 156.941 kb on + strand, within BACOVA_03083 at 156.962 kb on + strand, within BACOVA_03083 at 156.962 kb on + strand, within BACOVA_03083 at 156.963 kb on - strand, within BACOVA_03083 at 156.966 kb on + strand, within BACOVA_03083 at 157.058 kb on - strand, within BACOVA_03083 at 157.058 kb on - strand, within BACOVA_03083 at 157.093 kb on + strand, within BACOVA_03083 at 157.093 kb on + strand, within BACOVA_03083 at 157.103 kb on - strand, within BACOVA_03083 at 157.143 kb on + strand, within BACOVA_03083 at 157.144 kb on - strand, within BACOVA_03083 at 157.147 kb on - strand, within BACOVA_03083 at 157.157 kb on + strand, within BACOVA_03083 at 157.157 kb on + strand, within BACOVA_03083 at 157.158 kb on - strand, within BACOVA_03083 at 157.211 kb on + strand, within BACOVA_03083 at 157.216 kb on + strand, within BACOVA_03083 at 157.217 kb on - strand, within BACOVA_03083 at 157.217 kb on - strand, within BACOVA_03083 at 157.220 kb on + strand, within BACOVA_03083 at 157.221 kb on - strand, within BACOVA_03083 at 157.244 kb on + strand, within BACOVA_03083 at 157.245 kb on - strand, within BACOVA_03083 at 157.250 kb on + strand, within BACOVA_03083 at 157.309 kb on - strand, within BACOVA_03083 at 157.313 kb on + strand, within BACOVA_03083 at 157.350 kb on - strand, within BACOVA_03083 at 157.375 kb on + strand, within BACOVA_03083 at 157.395 kb on + strand, within BACOVA_03083 at 157.396 kb on - strand, within BACOVA_03083 at 157.397 kb on + strand, within BACOVA_03083 at 157.398 kb on - strand, within BACOVA_03083 at 157.398 kb on - strand, within BACOVA_03083 at 157.468 kb on + strand, within BACOVA_03083 at 157.469 kb on - strand, within BACOVA_03083 at 157.487 kb on + strand, within BACOVA_03083 at 157.537 kb on + strand, within BACOVA_03083 at 157.537 kb on + strand, within BACOVA_03083 at 157.538 kb on - strand, within BACOVA_03083 at 157.538 kb on - strand, within BACOVA_03083 at 157.546 kb on - strand, within BACOVA_03083 at 157.579 kb on - strand, within BACOVA_03083 at 157.617 kb on + strand, within BACOVA_03083 at 157.618 kb on - strand, within BACOVA_03083 at 157.668 kb on + strand, within BACOVA_03083 at 157.727 kb on + strand, within BACOVA_03083 at 157.727 kb on + strand, within BACOVA_03083 at 157.731 kb on + strand, within BACOVA_03083 at 157.732 kb on - strand, within BACOVA_03083 at 157.732 kb on - strand, within BACOVA_03083 at 157.732 kb on - strand, within BACOVA_03083 at 157.736 kb on + strand, within BACOVA_03083 at 157.783 kb on - strand, within BACOVA_03083 at 157.794 kb on - strand, within BACOVA_03083 at 157.840 kb on + strand, within BACOVA_03083 at 157.841 kb on - strand, within BACOVA_03083 at 157.936 kb on - strand at 157.937 kb on + strand at 157.938 kb on - strand at 157.962 kb on - strand at 157.962 kb on - strand at 157.965 kb on - strand at 158.002 kb on + strand at 158.025 kb on + strand at 158.054 kb on + strand at 158.055 kb on - strand at 158.055 kb on - strand at 158.102 kb on + strand at 158.102 kb on + strand at 158.104 kb on + strand at 158.106 kb on + strand at 158.106 kb on + strand at 158.170 kb on + strand at 158.201 kb on + strand at 158.214 kb on + strand at 158.307 kb on + strand, within BACOVA_03084 at 158.377 kb on + strand, within BACOVA_03084 at 158.423 kb on + strand, within BACOVA_03084 at 158.482 kb on + strand, within BACOVA_03084 at 158.540 kb on + strand, within BACOVA_03084 at 158.540 kb on + strand, within BACOVA_03084 at 158.544 kb on + strand, within BACOVA_03084 at 158.544 kb on + strand, within BACOVA_03084 at 158.544 kb on + strand, within BACOVA_03084 at 158.546 kb on + strand, within BACOVA_03084 at 158.546 kb on + strand, within BACOVA_03084 at 158.767 kb on + strand, within BACOVA_03084 at 158.787 kb on + strand, within BACOVA_03084 at 158.789 kb on + strand, within BACOVA_03084 at 158.864 kb on + strand, within BACOVA_03084 at 158.924 kb on + strand, within BACOVA_03084 at 158.929 kb on + strand, within BACOVA_03084 at 158.947 kb on + strand, within BACOVA_03084
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C) remove 155,605 + BACOVA_03082 0.70 -1.8 155,613 - BACOVA_03082 0.70 +1.3 155,617 + BACOVA_03082 0.70 -0.4 155,618 - BACOVA_03082 0.70 +3.9 155,623 + BACOVA_03082 0.70 +0.4 155,624 - BACOVA_03082 0.70 +2.4 155,643 + BACOVA_03082 0.71 -1.0 155,647 + BACOVA_03082 0.71 -0.1 155,648 - BACOVA_03082 0.71 +0.5 155,687 - BACOVA_03082 0.72 -1.1 155,724 + BACOVA_03082 0.74 -0.1 155,794 + BACOVA_03082 0.76 -2.8 155,814 + BACOVA_03082 0.77 -1.3 155,837 - BACOVA_03082 0.77 -0.3 155,862 + BACOVA_03082 0.78 -1.4 155,870 - BACOVA_03082 0.78 +0.3 155,870 - BACOVA_03082 0.78 +1.2 155,879 - BACOVA_03082 0.79 -0.5 155,901 - BACOVA_03082 0.79 +0.6 155,901 - BACOVA_03082 0.79 +0.1 155,945 - BACOVA_03082 0.81 -2.4 155,974 + BACOVA_03082 0.82 +2.6 155,997 + BACOVA_03082 0.82 -0.0 155,997 + BACOVA_03082 0.82 -0.8 155,997 + BACOVA_03082 0.82 -0.0 155,997 + BACOVA_03082 0.82 +2.0 155,997 + BACOVA_03082 0.82 +0.1 155,997 + BACOVA_03082 0.82 -1.6 155,997 + BACOVA_03082 0.82 +1.0 155,997 + BACOVA_03082 0.82 -0.1 155,997 + BACOVA_03082 0.82 +0.7 155,997 + BACOVA_03082 0.82 +1.0 155,998 - BACOVA_03082 0.82 +1.3 155,998 - BACOVA_03082 0.82 -0.8 155,998 - BACOVA_03082 0.82 -2.9 155,998 - BACOVA_03082 0.82 +2.3 155,998 - BACOVA_03082 0.82 +0.3 155,998 - BACOVA_03082 0.82 -0.3 155,998 - BACOVA_03082 0.82 +1.1 156,029 - BACOVA_03082 0.83 -0.2 156,034 + BACOVA_03082 0.84 -2.6 156,034 + BACOVA_03082 0.84 -0.4 156,035 - BACOVA_03082 0.84 +3.9 156,035 - BACOVA_03082 0.84 +0.1 156,035 - BACOVA_03082 0.84 +0.9 156,039 - BACOVA_03082 0.84 +1.2 156,039 - BACOVA_03082 0.84 -1.6 156,041 - BACOVA_03082 0.84 +0.5 156,093 - BACOVA_03082 0.85 +2.5 156,106 - BACOVA_03082 0.86 +1.2 156,106 - BACOVA_03082 0.86 -0.5 156,144 + BACOVA_03082 0.87 +2.1 156,145 - BACOVA_03082 0.87 +0.1 156,184 - BACOVA_03082 0.88 -2.4 156,206 + BACOVA_03082 0.89 -1.3 156,207 - BACOVA_03082 0.89 +0.7 156,208 + BACOVA_03082 0.89 +1.2 156,209 - BACOVA_03082 0.89 -1.4 156,214 + BACOVA_03082 0.89 -1.5 156,215 - BACOVA_03082 0.89 +0.1 156,245 + -1.4 156,256 + -1.5 156,256 - -0.2 156,272 - +2.5 156,287 - -0.8 156,290 + -0.4 156,290 + +0.5 156,291 - +2.3 156,291 - +1.2 156,291 - +0.6 156,321 + -1.8 156,321 + +2.0 156,322 - +0.8 156,322 - -1.1 156,322 - +1.0 156,322 - +1.1 156,334 + -0.0 156,334 + +1.9 156,335 - +0.0 156,400 + -1.8 156,400 + +3.5 156,400 + -0.6 156,416 - -0.3 156,416 - -1.0 156,433 + -1.6 156,433 + +1.3 156,434 - -0.5 156,434 - -3.6 156,434 - +0.2 156,449 - -1.3 156,449 - +0.3 156,484 - +0.1 156,491 - +0.9 156,498 + +0.7 156,499 - +1.8 156,499 - -0.6 156,499 - +0.8 156,523 + +0.0 156,557 + +0.5 156,557 + -1.2 156,562 + -1.2 156,610 + -2.0 156,610 + -3.4 156,610 + -0.5 156,611 - +1.1 156,611 - +3.8 156,620 + -1.1 156,687 - +0.8 156,690 + -0.3 156,691 - -0.0 156,691 - -0.5 156,735 + BACOVA_03083 0.12 -0.2 156,736 - BACOVA_03083 0.12 -1.3 156,737 + BACOVA_03083 0.12 -3.7 156,750 - BACOVA_03083 0.13 -1.9 156,808 + BACOVA_03083 0.17 -0.3 156,811 - BACOVA_03083 0.17 -1.5 156,815 + BACOVA_03083 0.18 +1.9 156,816 - BACOVA_03083 0.18 +2.0 156,816 - BACOVA_03083 0.18 -3.1 156,852 + BACOVA_03083 0.20 +1.8 156,872 + BACOVA_03083 0.21 +0.6 156,872 + BACOVA_03083 0.21 -1.9 156,873 - BACOVA_03083 0.22 -2.9 156,884 - BACOVA_03083 0.22 +1.1 156,884 - BACOVA_03083 0.22 -1.0 156,884 - BACOVA_03083 0.22 -1.4 156,941 + BACOVA_03083 0.26 +0.3 156,962 + BACOVA_03083 0.28 -0.2 156,962 + BACOVA_03083 0.28 +2.3 156,963 - BACOVA_03083 0.28 +3.1 156,966 + BACOVA_03083 0.28 +0.4 157,058 - BACOVA_03083 0.34 -1.6 157,058 - BACOVA_03083 0.34 +0.8 157,093 + BACOVA_03083 0.37 +1.0 157,093 + BACOVA_03083 0.37 -2.5 157,103 - BACOVA_03083 0.37 -0.4 157,143 + BACOVA_03083 0.40 -0.4 157,144 - BACOVA_03083 0.40 -0.3 157,147 - BACOVA_03083 0.40 -2.4 157,157 + BACOVA_03083 0.41 -1.0 157,157 + BACOVA_03083 0.41 +0.4 157,158 - BACOVA_03083 0.41 +2.4 157,211 + BACOVA_03083 0.45 +2.4 157,216 + BACOVA_03083 0.45 -2.0 157,217 - BACOVA_03083 0.45 -0.1 157,217 - BACOVA_03083 0.45 +1.2 157,220 + BACOVA_03083 0.45 -0.4 157,221 - BACOVA_03083 0.45 -0.9 157,244 + BACOVA_03083 0.47 +0.2 157,245 - BACOVA_03083 0.47 +1.8 157,250 + BACOVA_03083 0.47 +2.5 157,309 - BACOVA_03083 0.51 -1.1 157,313 + BACOVA_03083 0.52 -1.7 157,350 - BACOVA_03083 0.54 -1.1 157,375 + BACOVA_03083 0.56 +0.2 157,395 + BACOVA_03083 0.57 +2.4 157,396 - BACOVA_03083 0.57 +0.0 157,397 + BACOVA_03083 0.57 +0.5 157,398 - BACOVA_03083 0.57 -0.2 157,398 - BACOVA_03083 0.57 -0.8 157,468 + BACOVA_03083 0.62 +0.7 157,469 - BACOVA_03083 0.62 -1.9 157,487 + BACOVA_03083 0.64 +1.3 157,537 + BACOVA_03083 0.67 +0.1 157,537 + BACOVA_03083 0.67 +1.4 157,538 - BACOVA_03083 0.67 +0.1 157,538 - BACOVA_03083 0.67 +1.2 157,546 - BACOVA_03083 0.68 +0.4 157,579 - BACOVA_03083 0.70 +1.0 157,617 + BACOVA_03083 0.72 -0.2 157,618 - BACOVA_03083 0.73 -0.6 157,668 + BACOVA_03083 0.76 +2.1 157,727 + BACOVA_03083 0.80 +0.8 157,727 + BACOVA_03083 0.80 +2.8 157,731 + BACOVA_03083 0.80 +0.9 157,732 - BACOVA_03083 0.80 +1.2 157,732 - BACOVA_03083 0.80 -0.7 157,732 - BACOVA_03083 0.80 +2.4 157,736 + BACOVA_03083 0.81 -0.4 157,783 - BACOVA_03083 0.84 -0.6 157,794 - BACOVA_03083 0.85 -2.7 157,840 + BACOVA_03083 0.88 +1.6 157,841 - BACOVA_03083 0.88 -0.1 157,936 - -0.8 157,937 + -1.0 157,938 - +0.6 157,962 - -0.3 157,962 - -0.8 157,965 - +5.1 158,002 + +0.2 158,025 + +1.0 158,054 + -0.1 158,055 - +2.7 158,055 - +3.6 158,102 + -1.1 158,102 + -0.5 158,104 + +0.7 158,106 + +0.0 158,106 + +2.2 158,170 + +0.4 158,201 + -0.5 158,214 + -1.6 158,307 + BACOVA_03084 0.15 +0.9 158,377 + BACOVA_03084 0.20 +2.4 158,423 + BACOVA_03084 0.24 +0.3 158,482 + BACOVA_03084 0.29 -0.8 158,540 + BACOVA_03084 0.33 -1.3 158,540 + BACOVA_03084 0.33 -0.4 158,544 + BACOVA_03084 0.34 -0.1 158,544 + BACOVA_03084 0.34 +0.3 158,544 + BACOVA_03084 0.34 -2.1 158,546 + BACOVA_03084 0.34 -1.4 158,546 + BACOVA_03084 0.34 -0.4 158,767 + BACOVA_03084 0.51 +1.8 158,787 + BACOVA_03084 0.53 +0.8 158,789 + BACOVA_03084 0.53 -0.9 158,864 + BACOVA_03084 0.59 +0.1 158,924 + BACOVA_03084 0.64 -0.4 158,929 + BACOVA_03084 0.64 -0.9 158,947 + BACOVA_03084 0.66 -0.7
Or see this region's nucleotide sequence