Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03075

Experiment: Pullulan 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03073 and BACOVA_03074 are separated by 33 nucleotidesBACOVA_03074 and BACOVA_03075 are separated by 97 nucleotidesBACOVA_03075 and BACOVA_03077 are separated by 33 nucleotidesBACOVA_03077 and BACOVA_03076 overlap by 2 nucleotides BACOVA_03073: BACOVA_03073 - S-adenosylmethionine-dependent methyltransferase, YraL family, at 142,976 to 143,650 _03073 BACOVA_03074: BACOVA_03074 - hypothetical protein, at 143,684 to 144,541 _03074 BACOVA_03075: BACOVA_03075 - HAD hydrolase, TIGR02254 family, at 144,639 to 145,331 _03075 BACOVA_03077: BACOVA_03077 - hypothetical protein, at 145,365 to 145,487 _03077 BACOVA_03076: BACOVA_03076 - membrane protein, MarC family, at 145,486 to 146,043 _03076 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 143.640 kb on + strandat 143.649 kb on - strandat 143.684 kb on - strandat 143.694 kb on + strandat 143.704 kb on - strandat 143.710 kb on - strandat 143.724 kb on + strandat 143.737 kb on + strandat 143.743 kb on + strandat 143.744 kb on - strandat 143.824 kb on + strand, within BACOVA_03074at 143.825 kb on - strand, within BACOVA_03074at 143.825 kb on - strand, within BACOVA_03074at 144.032 kb on + strand, within BACOVA_03074at 144.032 kb on + strand, within BACOVA_03074at 144.277 kb on + strand, within BACOVA_03074at 144.322 kb on - strand, within BACOVA_03074at 144.322 kb on - strand, within BACOVA_03074at 144.374 kb on - strand, within BACOVA_03074at 144.374 kb on - strand, within BACOVA_03074at 144.415 kb on - strand, within BACOVA_03074at 144.450 kb on + strand, within BACOVA_03074at 144.487 kb on + strandat 144.487 kb on + strandat 144.511 kb on - strandat 144.526 kb on + strandat 144.544 kb on + strandat 144.545 kb on - strandat 144.595 kb on + strandat 144.622 kb on + strandat 144.623 kb on - strandat 144.624 kb on + strandat 144.625 kb on - strandat 144.625 kb on - strandat 144.625 kb on - strandat 144.634 kb on + strandat 144.635 kb on - strandat 144.721 kb on + strand, within BACOVA_03075at 144.722 kb on - strand, within BACOVA_03075at 144.723 kb on + strand, within BACOVA_03075at 144.724 kb on - strand, within BACOVA_03075at 144.724 kb on - strand, within BACOVA_03075at 144.771 kb on + strand, within BACOVA_03075at 144.772 kb on - strand, within BACOVA_03075at 144.772 kb on - strand, within BACOVA_03075at 144.773 kb on + strand, within BACOVA_03075at 144.814 kb on - strand, within BACOVA_03075at 144.872 kb on - strand, within BACOVA_03075at 144.944 kb on + strand, within BACOVA_03075at 144.984 kb on + strand, within BACOVA_03075at 144.995 kb on + strand, within BACOVA_03075at 144.996 kb on - strand, within BACOVA_03075at 144.999 kb on + strand, within BACOVA_03075at 145.000 kb on - strand, within BACOVA_03075at 145.000 kb on - strand, within BACOVA_03075at 145.001 kb on + strand, within BACOVA_03075at 145.002 kb on - strand, within BACOVA_03075at 145.002 kb on - strand, within BACOVA_03075at 145.008 kb on + strand, within BACOVA_03075at 145.009 kb on - strand, within BACOVA_03075at 145.009 kb on - strand, within BACOVA_03075at 145.009 kb on - strand, within BACOVA_03075at 145.010 kb on + strand, within BACOVA_03075at 145.209 kb on - strand, within BACOVA_03075at 145.210 kb on + strand, within BACOVA_03075at 145.229 kb on - strand, within BACOVA_03075at 145.248 kb on + strand, within BACOVA_03075at 145.268 kb on + strandat 145.268 kb on + strandat 145.268 kb on + strandat 145.269 kb on - strandat 145.291 kb on - strandat 145.291 kb on - strandat 145.297 kb on + strandat 145.297 kb on + strandat 145.316 kb on - strandat 145.324 kb on + strandat 145.325 kb on - strandat 145.325 kb on - strandat 145.325 kb on - strandat 145.325 kb on - strandat 145.344 kb on - strandat 145.386 kb on + strand, within BACOVA_03077at 145.388 kb on + strand, within BACOVA_03077at 145.389 kb on - strand, within BACOVA_03077at 145.389 kb on - strand, within BACOVA_03077at 145.398 kb on + strand, within BACOVA_03077at 145.398 kb on + strand, within BACOVA_03077at 145.402 kb on - strand, within BACOVA_03077at 145.442 kb on + strand, within BACOVA_03077at 145.443 kb on + strand, within BACOVA_03077at 145.521 kb on + strandat 145.521 kb on + strandat 145.522 kb on - strandat 145.522 kb on - strandat 145.527 kb on - strandat 145.555 kb on - strand, within BACOVA_03076at 145.565 kb on + strand, within BACOVA_03076at 145.565 kb on + strand, within BACOVA_03076at 145.565 kb on + strand, within BACOVA_03076at 145.565 kb on + strand, within BACOVA_03076at 145.645 kb on - strand, within BACOVA_03076at 145.666 kb on - strand, within BACOVA_03076at 145.683 kb on + strand, within BACOVA_03076at 145.683 kb on + strand, within BACOVA_03076at 145.684 kb on - strand, within BACOVA_03076at 145.684 kb on - strand, within BACOVA_03076at 145.721 kb on - strand, within BACOVA_03076at 145.731 kb on + strand, within BACOVA_03076at 145.732 kb on - strand, within BACOVA_03076at 145.740 kb on + strand, within BACOVA_03076at 145.758 kb on + strand, within BACOVA_03076at 145.759 kb on - strand, within BACOVA_03076at 145.764 kb on - strand, within BACOVA_03076at 145.848 kb on + strand, within BACOVA_03076at 145.849 kb on - strand, within BACOVA_03076at 145.849 kb on - strand, within BACOVA_03076at 145.849 kb on - strand, within BACOVA_03076at 145.935 kb on - strand, within BACOVA_03076at 145.935 kb on - strand, within BACOVA_03076at 145.935 kb on - strand, within BACOVA_03076at 145.968 kb on - strand, within BACOVA_03076at 146.048 kb on - strandat 146.109 kb on + strandat 146.118 kb on - strandat 146.132 kb on + strandat 146.134 kb on + strandat 146.134 kb on + strandat 146.136 kb on + strandat 146.137 kb on - strandat 146.137 kb on - strandat 146.138 kb on + strandat 146.143 kb on - strandat 146.143 kb on - strandat 146.150 kb on + strandat 146.197 kb on + strandat 146.225 kb on - strandat 146.248 kb on + strandat 146.249 kb on - strandat 146.276 kb on - strandat 146.288 kb on - strandat 146.293 kb on + strandat 146.296 kb on - strandat 146.304 kb on - strandat 146.329 kb on + strandat 146.329 kb on + strandat 146.331 kb on + strandat 146.331 kb on + strandat 146.331 kb on + strandat 146.331 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C)
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143,640 + -0.8
143,649 - -2.5
143,684 - -2.4
143,694 + -1.0
143,704 - -1.1
143,710 - +0.2
143,724 + -0.6
143,737 + -0.1
143,743 + -1.1
143,744 - -1.1
143,824 + BACOVA_03074 0.16 -2.1
143,825 - BACOVA_03074 0.16 -2.7
143,825 - BACOVA_03074 0.16 -0.1
144,032 + BACOVA_03074 0.41 -1.2
144,032 + BACOVA_03074 0.41 -2.6
144,277 + BACOVA_03074 0.69 -2.1
144,322 - BACOVA_03074 0.74 +0.7
144,322 - BACOVA_03074 0.74 -0.5
144,374 - BACOVA_03074 0.80 -1.6
144,374 - BACOVA_03074 0.80 -2.4
144,415 - BACOVA_03074 0.85 -0.9
144,450 + BACOVA_03074 0.89 -0.6
144,487 + +0.8
144,487 + +3.3
144,511 - -0.5
144,526 + -2.3
144,544 + +2.9
144,545 - +2.0
144,595 + -1.4
144,622 + +0.8
144,623 - -0.8
144,624 + +1.0
144,625 - -2.4
144,625 - +0.6
144,625 - -0.1
144,634 + -0.3
144,635 - -1.2
144,721 + BACOVA_03075 0.12 +0.1
144,722 - BACOVA_03075 0.12 -2.2
144,723 + BACOVA_03075 0.12 +0.1
144,724 - BACOVA_03075 0.12 -1.7
144,724 - BACOVA_03075 0.12 -0.6
144,771 + BACOVA_03075 0.19 -0.5
144,772 - BACOVA_03075 0.19 -1.8
144,772 - BACOVA_03075 0.19 -2.3
144,773 + BACOVA_03075 0.19 -1.3
144,814 - BACOVA_03075 0.25 -2.7
144,872 - BACOVA_03075 0.34 -0.8
144,944 + BACOVA_03075 0.44 +0.3
144,984 + BACOVA_03075 0.50 -1.3
144,995 + BACOVA_03075 0.51 -1.4
144,996 - BACOVA_03075 0.52 -0.6
144,999 + BACOVA_03075 0.52 -0.4
145,000 - BACOVA_03075 0.52 -2.5
145,000 - BACOVA_03075 0.52 -2.0
145,001 + BACOVA_03075 0.52 +0.2
145,002 - BACOVA_03075 0.52 +0.4
145,002 - BACOVA_03075 0.52 -0.2
145,008 + BACOVA_03075 0.53 -2.1
145,009 - BACOVA_03075 0.53 -1.0
145,009 - BACOVA_03075 0.53 +2.5
145,009 - BACOVA_03075 0.53 -2.5
145,010 + BACOVA_03075 0.54 -0.6
145,209 - BACOVA_03075 0.82 -2.2
145,210 + BACOVA_03075 0.82 -0.6
145,229 - BACOVA_03075 0.85 -1.4
145,248 + BACOVA_03075 0.88 -2.0
145,268 + +1.7
145,268 + -2.2
145,268 + +1.8
145,269 - -3.1
145,291 - +4.1
145,291 - -0.6
145,297 + -2.0
145,297 + +0.5
145,316 - +0.7
145,324 + -1.3
145,325 - -1.1
145,325 - -0.2
145,325 - +1.7
145,325 - +1.1
145,344 - -0.5
145,386 + BACOVA_03077 0.17 +0.2
145,388 + BACOVA_03077 0.19 -0.1
145,389 - BACOVA_03077 0.20 +0.0
145,389 - BACOVA_03077 0.20 -0.3
145,398 + BACOVA_03077 0.27 -2.6
145,398 + BACOVA_03077 0.27 -0.5
145,402 - BACOVA_03077 0.30 +0.5
145,442 + BACOVA_03077 0.63 +2.5
145,443 + BACOVA_03077 0.63 +0.2
145,521 + -2.0
145,521 + -1.1
145,522 - -2.4
145,522 - +1.0
145,527 - -2.0
145,555 - BACOVA_03076 0.12 -2.3
145,565 + BACOVA_03076 0.14 -1.0
145,565 + BACOVA_03076 0.14 -1.1
145,565 + BACOVA_03076 0.14 -1.9
145,565 + BACOVA_03076 0.14 -1.9
145,645 - BACOVA_03076 0.28 -1.0
145,666 - BACOVA_03076 0.32 +0.8
145,683 + BACOVA_03076 0.35 +0.7
145,683 + BACOVA_03076 0.35 -2.9
145,684 - BACOVA_03076 0.35 +0.3
145,684 - BACOVA_03076 0.35 -1.4
145,721 - BACOVA_03076 0.42 +0.1
145,731 + BACOVA_03076 0.44 +0.8
145,732 - BACOVA_03076 0.44 +1.3
145,740 + BACOVA_03076 0.46 -2.0
145,758 + BACOVA_03076 0.49 +0.4
145,759 - BACOVA_03076 0.49 -0.4
145,764 - BACOVA_03076 0.50 -2.1
145,848 + BACOVA_03076 0.65 -0.8
145,849 - BACOVA_03076 0.65 +0.2
145,849 - BACOVA_03076 0.65 -0.3
145,849 - BACOVA_03076 0.65 -2.0
145,935 - BACOVA_03076 0.80 +0.4
145,935 - BACOVA_03076 0.80 -2.2
145,935 - BACOVA_03076 0.80 -1.1
145,968 - BACOVA_03076 0.86 +0.5
146,048 - -1.6
146,109 + +0.2
146,118 - -0.7
146,132 + +1.4
146,134 + -1.1
146,134 + -1.9
146,136 + -0.7
146,137 - -1.8
146,137 - +0.2
146,138 + +0.8
146,143 - -1.8
146,143 - -0.3
146,150 + +1.4
146,197 + +0.1
146,225 - +0.4
146,248 + -2.5
146,249 - +0.1
146,276 - -2.1
146,288 - -0.6
146,293 + +0.1
146,296 - -1.5
146,304 - +0.1
146,329 + +0.7
146,329 + +1.3
146,331 + +0.8
146,331 + -2.3
146,331 + -1.3
146,331 + -2.2

Or see this region's nucleotide sequence