Experiment: Pullulan 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02770 and BACOVA_02771 are separated by 101 nucleotides BACOVA_02771 and BACOVA_02772 are separated by 121 nucleotides BACOVA_02772 and BACOVA_02773 are separated by 29 nucleotides
BACOVA_02770: BACOVA_02770 - glycosyl hydrolase family 2, sugar binding domain protein, at 218,690 to 220,483
_02770
BACOVA_02771: BACOVA_02771 - cysteine synthase A, at 220,585 to 221,532
_02771
BACOVA_02772: BACOVA_02772 - cupin domain protein, at 221,654 to 221,995
_02772
BACOVA_02773: BACOVA_02773 - hypothetical protein, at 222,025 to 222,825
_02773
Position (kb) 220
221
222 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 219.588 kb on - strand, within BACOVA_02770 at 219.591 kb on + strand, within BACOVA_02770 at 219.619 kb on + strand, within BACOVA_02770 at 219.621 kb on + strand, within BACOVA_02770 at 219.640 kb on - strand, within BACOVA_02770 at 219.687 kb on + strand, within BACOVA_02770 at 219.688 kb on - strand, within BACOVA_02770 at 219.688 kb on - strand, within BACOVA_02770 at 219.708 kb on + strand, within BACOVA_02770 at 219.716 kb on - strand, within BACOVA_02770 at 219.716 kb on - strand, within BACOVA_02770 at 219.790 kb on - strand, within BACOVA_02770 at 219.806 kb on - strand, within BACOVA_02770 at 219.820 kb on - strand, within BACOVA_02770 at 219.886 kb on + strand, within BACOVA_02770 at 219.887 kb on - strand, within BACOVA_02770 at 219.904 kb on + strand, within BACOVA_02770 at 219.907 kb on - strand, within BACOVA_02770 at 219.969 kb on + strand, within BACOVA_02770 at 219.969 kb on + strand, within BACOVA_02770 at 219.970 kb on - strand, within BACOVA_02770 at 219.974 kb on - strand, within BACOVA_02770 at 219.995 kb on - strand, within BACOVA_02770 at 219.998 kb on - strand, within BACOVA_02770 at 220.034 kb on + strand, within BACOVA_02770 at 220.035 kb on - strand, within BACOVA_02770 at 220.036 kb on + strand, within BACOVA_02770 at 220.078 kb on - strand, within BACOVA_02770 at 220.109 kb on + strand, within BACOVA_02770 at 220.109 kb on + strand, within BACOVA_02770 at 220.109 kb on + strand, within BACOVA_02770 at 220.110 kb on - strand, within BACOVA_02770 at 220.112 kb on - strand, within BACOVA_02770 at 220.121 kb on + strand, within BACOVA_02770 at 220.215 kb on - strand, within BACOVA_02770 at 220.275 kb on + strand, within BACOVA_02770 at 220.275 kb on + strand, within BACOVA_02770 at 220.276 kb on - strand, within BACOVA_02770 at 220.276 kb on - strand, within BACOVA_02770 at 220.277 kb on + strand, within BACOVA_02770 at 220.306 kb on + strand at 220.407 kb on + strand at 220.408 kb on - strand at 220.442 kb on + strand at 220.442 kb on + strand at 220.444 kb on + strand at 220.444 kb on + strand at 220.444 kb on + strand at 220.461 kb on - strand at 220.461 kb on - strand at 220.475 kb on - strand at 220.495 kb on + strand at 220.495 kb on + strand at 220.513 kb on + strand at 220.514 kb on - strand at 220.540 kb on - strand at 220.586 kb on + strand at 220.586 kb on + strand at 220.625 kb on - strand at 220.625 kb on - strand at 220.625 kb on - strand at 220.652 kb on - strand at 220.709 kb on + strand, within BACOVA_02771 at 220.710 kb on - strand, within BACOVA_02771 at 220.710 kb on - strand, within BACOVA_02771 at 220.711 kb on + strand, within BACOVA_02771 at 220.712 kb on - strand, within BACOVA_02771 at 220.729 kb on + strand, within BACOVA_02771 at 220.729 kb on + strand, within BACOVA_02771 at 220.730 kb on - strand, within BACOVA_02771 at 220.754 kb on + strand, within BACOVA_02771 at 220.804 kb on - strand, within BACOVA_02771 at 220.819 kb on - strand, within BACOVA_02771 at 220.830 kb on - strand, within BACOVA_02771 at 220.830 kb on - strand, within BACOVA_02771 at 220.836 kb on + strand, within BACOVA_02771 at 220.870 kb on - strand, within BACOVA_02771 at 220.870 kb on - strand, within BACOVA_02771 at 220.918 kb on + strand, within BACOVA_02771 at 220.918 kb on + strand, within BACOVA_02771 at 220.934 kb on - strand, within BACOVA_02771 at 220.935 kb on + strand, within BACOVA_02771 at 220.966 kb on + strand, within BACOVA_02771 at 220.994 kb on - strand, within BACOVA_02771 at 221.052 kb on + strand, within BACOVA_02771 at 221.185 kb on + strand, within BACOVA_02771 at 221.186 kb on - strand, within BACOVA_02771 at 221.186 kb on - strand, within BACOVA_02771 at 221.226 kb on + strand, within BACOVA_02771 at 221.259 kb on + strand, within BACOVA_02771 at 221.268 kb on + strand, within BACOVA_02771 at 221.325 kb on + strand, within BACOVA_02771 at 221.325 kb on + strand, within BACOVA_02771 at 221.326 kb on - strand, within BACOVA_02771 at 221.383 kb on + strand, within BACOVA_02771 at 221.384 kb on - strand, within BACOVA_02771 at 221.454 kb on + strand at 221.463 kb on + strand at 221.464 kb on - strand at 221.465 kb on + strand at 221.466 kb on - strand at 221.470 kb on - strand at 221.473 kb on - strand at 221.494 kb on - strand at 221.532 kb on + strand at 221.532 kb on + strand at 221.534 kb on + strand at 221.534 kb on + strand at 221.534 kb on + strand at 221.534 kb on + strand at 221.535 kb on - strand at 221.535 kb on - strand at 221.535 kb on - strand at 221.535 kb on - strand at 221.536 kb on + strand at 221.562 kb on - strand at 221.565 kb on - strand at 221.566 kb on + strand at 221.607 kb on + strand at 221.608 kb on - strand at 221.609 kb on + strand at 221.609 kb on + strand at 221.609 kb on + strand at 221.610 kb on - strand at 221.610 kb on - strand at 221.610 kb on - strand at 221.610 kb on - strand at 221.631 kb on + strand at 221.631 kb on + strand at 221.632 kb on - strand at 221.632 kb on - strand at 221.633 kb on + strand at 221.653 kb on - strand at 221.653 kb on - strand at 221.658 kb on - strand at 221.658 kb on - strand at 221.660 kb on + strand at 221.689 kb on + strand, within BACOVA_02772 at 221.690 kb on - strand, within BACOVA_02772 at 221.700 kb on - strand, within BACOVA_02772 at 221.700 kb on - strand, within BACOVA_02772 at 221.748 kb on + strand, within BACOVA_02772 at 221.748 kb on + strand, within BACOVA_02772 at 221.751 kb on + strand, within BACOVA_02772 at 221.752 kb on - strand, within BACOVA_02772 at 221.820 kb on + strand, within BACOVA_02772 at 221.820 kb on + strand, within BACOVA_02772 at 221.821 kb on - strand, within BACOVA_02772 at 221.838 kb on + strand, within BACOVA_02772 at 221.838 kb on + strand, within BACOVA_02772 at 221.839 kb on - strand, within BACOVA_02772 at 221.851 kb on + strand, within BACOVA_02772 at 222.005 kb on + strand at 222.018 kb on - strand at 222.018 kb on - strand at 222.027 kb on - strand at 222.060 kb on - strand at 222.126 kb on + strand, within BACOVA_02773 at 222.130 kb on + strand, within BACOVA_02773 at 222.131 kb on - strand, within BACOVA_02773 at 222.132 kb on + strand, within BACOVA_02773 at 222.133 kb on - strand, within BACOVA_02773 at 222.170 kb on + strand, within BACOVA_02773 at 222.240 kb on + strand, within BACOVA_02773 at 222.241 kb on - strand, within BACOVA_02773 at 222.241 kb on - strand, within BACOVA_02773 at 222.254 kb on + strand, within BACOVA_02773 at 222.254 kb on + strand, within BACOVA_02773 at 222.255 kb on - strand, within BACOVA_02773 at 222.349 kb on + strand, within BACOVA_02773 at 222.349 kb on + strand, within BACOVA_02773 at 222.349 kb on + strand, within BACOVA_02773 at 222.384 kb on - strand, within BACOVA_02773 at 222.456 kb on + strand, within BACOVA_02773 at 222.467 kb on + strand, within BACOVA_02773 at 222.468 kb on - strand, within BACOVA_02773 at 222.468 kb on - strand, within BACOVA_02773 at 222.478 kb on - strand, within BACOVA_02773 at 222.478 kb on - strand, within BACOVA_02773 at 222.478 kb on - strand, within BACOVA_02773 at 222.521 kb on + strand, within BACOVA_02773
Per-strain Table
Position Strand Gene LocusTag Fraction Pullulan 2.5 mg/mL (C) remove 219,588 - BACOVA_02770 0.50 -1.5 219,591 + BACOVA_02770 0.50 +0.6 219,619 + BACOVA_02770 0.52 +2.0 219,621 + BACOVA_02770 0.52 -2.1 219,640 - BACOVA_02770 0.53 -1.1 219,687 + BACOVA_02770 0.56 -2.4 219,688 - BACOVA_02770 0.56 +2.1 219,688 - BACOVA_02770 0.56 +0.7 219,708 + BACOVA_02770 0.57 -0.8 219,716 - BACOVA_02770 0.57 +2.0 219,716 - BACOVA_02770 0.57 -1.2 219,790 - BACOVA_02770 0.61 -0.4 219,806 - BACOVA_02770 0.62 +0.4 219,820 - BACOVA_02770 0.63 -1.6 219,886 + BACOVA_02770 0.67 -0.4 219,887 - BACOVA_02770 0.67 -2.8 219,904 + BACOVA_02770 0.68 -0.4 219,907 - BACOVA_02770 0.68 -1.3 219,969 + BACOVA_02770 0.71 -0.8 219,969 + BACOVA_02770 0.71 -0.2 219,970 - BACOVA_02770 0.71 +3.8 219,974 - BACOVA_02770 0.72 -0.3 219,995 - BACOVA_02770 0.73 -2.3 219,998 - BACOVA_02770 0.73 -0.6 220,034 + BACOVA_02770 0.75 -1.6 220,035 - BACOVA_02770 0.75 +2.3 220,036 + BACOVA_02770 0.75 +0.7 220,078 - BACOVA_02770 0.77 +0.4 220,109 + BACOVA_02770 0.79 -0.1 220,109 + BACOVA_02770 0.79 +0.6 220,109 + BACOVA_02770 0.79 -0.4 220,110 - BACOVA_02770 0.79 -0.3 220,112 - BACOVA_02770 0.79 -1.9 220,121 + BACOVA_02770 0.80 -1.1 220,215 - BACOVA_02770 0.85 +1.0 220,275 + BACOVA_02770 0.88 -1.5 220,275 + BACOVA_02770 0.88 -0.2 220,276 - BACOVA_02770 0.88 -1.6 220,276 - BACOVA_02770 0.88 +2.9 220,277 + BACOVA_02770 0.88 -2.2 220,306 + -2.7 220,407 + +0.9 220,408 - +2.3 220,442 + -1.6 220,442 + -1.8 220,444 + -0.6 220,444 + -2.9 220,444 + -0.2 220,461 - +0.1 220,461 - -1.2 220,475 - -1.0 220,495 + -1.4 220,495 + -2.9 220,513 + -0.6 220,514 - +0.1 220,540 - -0.3 220,586 + -1.0 220,586 + +0.7 220,625 - +1.1 220,625 - -4.7 220,625 - +1.6 220,652 - -1.6 220,709 + BACOVA_02771 0.13 -3.2 220,710 - BACOVA_02771 0.13 -0.2 220,710 - BACOVA_02771 0.13 -4.4 220,711 + BACOVA_02771 0.13 -0.2 220,712 - BACOVA_02771 0.13 -4.7 220,729 + BACOVA_02771 0.15 -0.4 220,729 + BACOVA_02771 0.15 -0.6 220,730 - BACOVA_02771 0.15 -1.1 220,754 + BACOVA_02771 0.18 -0.3 220,804 - BACOVA_02771 0.23 -0.9 220,819 - BACOVA_02771 0.25 -2.6 220,830 - BACOVA_02771 0.26 -1.8 220,830 - BACOVA_02771 0.26 +1.0 220,836 + BACOVA_02771 0.26 -2.3 220,870 - BACOVA_02771 0.30 -2.2 220,870 - BACOVA_02771 0.30 -1.5 220,918 + BACOVA_02771 0.35 -3.0 220,918 + BACOVA_02771 0.35 +0.1 220,934 - BACOVA_02771 0.37 -1.8 220,935 + BACOVA_02771 0.37 -2.3 220,966 + BACOVA_02771 0.40 -3.8 220,994 - BACOVA_02771 0.43 -0.6 221,052 + BACOVA_02771 0.49 -3.3 221,185 + BACOVA_02771 0.63 -0.6 221,186 - BACOVA_02771 0.63 -1.5 221,186 - BACOVA_02771 0.63 -1.2 221,226 + BACOVA_02771 0.68 -0.6 221,259 + BACOVA_02771 0.71 -4.1 221,268 + BACOVA_02771 0.72 -2.2 221,325 + BACOVA_02771 0.78 -1.4 221,325 + BACOVA_02771 0.78 -1.8 221,326 - BACOVA_02771 0.78 -0.2 221,383 + BACOVA_02771 0.84 -3.2 221,384 - BACOVA_02771 0.84 +2.0 221,454 + -1.6 221,463 + -3.6 221,464 - -1.4 221,465 + -2.4 221,466 - -2.9 221,470 - -2.6 221,473 - -2.9 221,494 - -2.1 221,532 + -0.0 221,532 + -3.4 221,534 + -3.0 221,534 + -1.1 221,534 + -1.2 221,534 + -2.1 221,535 - -1.3 221,535 - -0.7 221,535 - -2.3 221,535 - -1.5 221,536 + -0.9 221,562 - +0.1 221,565 - -0.8 221,566 + -3.1 221,607 + -2.8 221,608 - -3.8 221,609 + -3.7 221,609 + -0.6 221,609 + -0.8 221,610 - +0.8 221,610 - -2.1 221,610 - -0.9 221,610 - +1.6 221,631 + -0.8 221,631 + -2.7 221,632 - -0.3 221,632 - -3.2 221,633 + -1.4 221,653 - -0.5 221,653 - -1.4 221,658 - -1.3 221,658 - -2.2 221,660 + +0.1 221,689 + BACOVA_02772 0.10 -1.6 221,690 - BACOVA_02772 0.11 +1.6 221,700 - BACOVA_02772 0.13 -1.5 221,700 - BACOVA_02772 0.13 +0.6 221,748 + BACOVA_02772 0.27 +1.1 221,748 + BACOVA_02772 0.27 -0.0 221,751 + BACOVA_02772 0.28 -0.3 221,752 - BACOVA_02772 0.29 +0.9 221,820 + BACOVA_02772 0.49 -0.3 221,820 + BACOVA_02772 0.49 -1.1 221,821 - BACOVA_02772 0.49 -0.6 221,838 + BACOVA_02772 0.54 -0.1 221,838 + BACOVA_02772 0.54 -0.9 221,839 - BACOVA_02772 0.54 -0.1 221,851 + BACOVA_02772 0.58 +1.5 222,005 + +2.8 222,018 - -1.1 222,018 - -0.2 222,027 - -0.4 222,060 - +0.3 222,126 + BACOVA_02773 0.13 -0.6 222,130 + BACOVA_02773 0.13 +0.5 222,131 - BACOVA_02773 0.13 +1.5 222,132 + BACOVA_02773 0.13 +1.7 222,133 - BACOVA_02773 0.13 -0.2 222,170 + BACOVA_02773 0.18 +3.0 222,240 + BACOVA_02773 0.27 -1.0 222,241 - BACOVA_02773 0.27 -1.4 222,241 - BACOVA_02773 0.27 -0.4 222,254 + BACOVA_02773 0.29 -0.6 222,254 + BACOVA_02773 0.29 -2.3 222,255 - BACOVA_02773 0.29 -0.6 222,349 + BACOVA_02773 0.40 +0.7 222,349 + BACOVA_02773 0.40 +0.4 222,349 + BACOVA_02773 0.40 +1.2 222,384 - BACOVA_02773 0.45 -0.3 222,456 + BACOVA_02773 0.54 +0.4 222,467 + BACOVA_02773 0.55 -0.8 222,468 - BACOVA_02773 0.55 +0.7 222,468 - BACOVA_02773 0.55 -0.1 222,478 - BACOVA_02773 0.57 -0.5 222,478 - BACOVA_02773 0.57 +0.9 222,478 - BACOVA_02773 0.57 -4.5 222,521 + BACOVA_02773 0.62 +1.0
Or see this region's nucleotide sequence