Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02781

Experiment: T3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02780 and OHPLBJKB_02781 are separated by 122 nucleotidesOHPLBJKB_02781 and OHPLBJKB_02782 are separated by 0 nucleotides OHPLBJKB_02780: OHPLBJKB_02780 - Thioredoxin reductase, at 2,910,241 to 2,911,206 _02780 OHPLBJKB_02781: OHPLBJKB_02781 - ATP-binding/permease protein CydD, at 2,911,329 to 2,913,095 _02781 OHPLBJKB_02782: OHPLBJKB_02782 - Lipid A export ATP-binding/permease protein MsbA, at 2,913,096 to 2,914,817 _02782 Position (kb) 2911 2912 2913 2914Strain fitness (log2 ratio) -1 0 1 2at 2910.550 kb on + strand, within OHPLBJKB_02780at 2910.570 kb on + strand, within OHPLBJKB_02780at 2910.595 kb on + strand, within OHPLBJKB_02780at 2910.670 kb on + strand, within OHPLBJKB_02780at 2911.037 kb on + strand, within OHPLBJKB_02780at 2911.037 kb on + strand, within OHPLBJKB_02780at 2911.281 kb on + strandat 2911.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T3 MOI1
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2,910,550 + OHPLBJKB_02780 0.32 -0.8
2,910,570 + OHPLBJKB_02780 0.34 -0.6
2,910,595 + OHPLBJKB_02780 0.37 -1.1
2,910,670 + OHPLBJKB_02780 0.44 +0.1
2,911,037 + OHPLBJKB_02780 0.82 -1.1
2,911,037 + OHPLBJKB_02780 0.82 -1.4
2,911,281 + -0.4
2,911,319 + +2.1

Or see this region's nucleotide sequence