Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05591

Experiment: Xylan from corn core 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05590 and BACOVA_05591 are separated by 57 nucleotidesBACOVA_05591 and BACOVA_05592 overlap by 129 nucleotidesBACOVA_05592 and BACOVA_05593 are separated by 193 nucleotidesBACOVA_05593 and BACOVA_05594 overlap by 4 nucleotidesBACOVA_05594 and BACOVA_05595 overlap by 14 nucleotides BACOVA_05590: BACOVA_05590 - VirE N-terminal domain protein, at 1,106,738 to 1,108,855 _05590 BACOVA_05591: BACOVA_05591 - hypothetical protein, at 1,108,913 to 1,109,071 _05591 BACOVA_05592: BACOVA_05592 - hypothetical protein, at 1,108,943 to 1,109,173 _05592 BACOVA_05593: BACOVA_05593 - putative DNA-binding protein, at 1,109,367 to 1,109,870 _05593 BACOVA_05594: BACOVA_05594 - hypothetical protein, at 1,109,867 to 1,110,058 _05594 BACOVA_05595: BACOVA_05595 - N-acetylmuramoyl-L-alanine amidase, at 1,110,045 to 1,110,488 _05595 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -2 -1 0 1 2at 1108.016 kb on - strand, within BACOVA_05590at 1108.057 kb on - strand, within BACOVA_05590at 1108.118 kb on - strand, within BACOVA_05590at 1108.167 kb on + strand, within BACOVA_05590at 1108.168 kb on - strand, within BACOVA_05590at 1108.312 kb on - strand, within BACOVA_05590at 1108.349 kb on - strand, within BACOVA_05590at 1108.481 kb on + strand, within BACOVA_05590at 1108.487 kb on + strand, within BACOVA_05590at 1108.487 kb on + strand, within BACOVA_05590at 1108.488 kb on - strand, within BACOVA_05590at 1108.692 kb on - strandat 1108.945 kb on - strandat 1108.960 kb on - strandat 1108.964 kb on + strandat 1108.965 kb on - strandat 1109.110 kb on - strand, within BACOVA_05592at 1109.226 kb on + strandat 1109.258 kb on - strandat 1109.363 kb on + strandat 1109.381 kb on - strandat 1109.386 kb on - strandat 1109.393 kb on - strandat 1109.439 kb on + strand, within BACOVA_05593at 1109.553 kb on + strand, within BACOVA_05593at 1109.735 kb on + strand, within BACOVA_05593at 1109.740 kb on - strand, within BACOVA_05593at 1109.750 kb on - strand, within BACOVA_05593at 1109.871 kb on + strandat 1109.883 kb on + strandat 1109.884 kb on - strandat 1109.909 kb on - strand, within BACOVA_05594at 1109.923 kb on - strand, within BACOVA_05594at 1109.923 kb on - strand, within BACOVA_05594at 1109.923 kb on - strand, within BACOVA_05594at 1109.996 kb on - strand, within BACOVA_05594

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C)
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1,108,016 - BACOVA_05590 0.60 -0.1
1,108,057 - BACOVA_05590 0.62 -1.4
1,108,118 - BACOVA_05590 0.65 -0.5
1,108,167 + BACOVA_05590 0.67 -1.8
1,108,168 - BACOVA_05590 0.68 +0.5
1,108,312 - BACOVA_05590 0.74 -1.0
1,108,349 - BACOVA_05590 0.76 +0.1
1,108,481 + BACOVA_05590 0.82 +0.6
1,108,487 + BACOVA_05590 0.83 -1.7
1,108,487 + BACOVA_05590 0.83 -0.1
1,108,488 - BACOVA_05590 0.83 -0.1
1,108,692 - +0.4
1,108,945 - +0.5
1,108,960 - +0.3
1,108,964 + +0.6
1,108,965 - -0.3
1,109,110 - BACOVA_05592 0.72 -0.6
1,109,226 + -0.7
1,109,258 - +0.3
1,109,363 + +0.9
1,109,381 - -0.5
1,109,386 - +1.2
1,109,393 - +0.5
1,109,439 + BACOVA_05593 0.14 -0.3
1,109,553 + BACOVA_05593 0.37 -0.8
1,109,735 + BACOVA_05593 0.73 -1.0
1,109,740 - BACOVA_05593 0.74 +0.9
1,109,750 - BACOVA_05593 0.76 -1.0
1,109,871 + +0.0
1,109,883 + +1.9
1,109,884 - -0.9
1,109,909 - BACOVA_05594 0.22 +0.7
1,109,923 - BACOVA_05594 0.29 +0.3
1,109,923 - BACOVA_05594 0.29 -0.8
1,109,923 - BACOVA_05594 0.29 -0.4
1,109,996 - BACOVA_05594 0.67 +0.4

Or see this region's nucleotide sequence