Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04921

Experiment: Xylan from corn core 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04920 and BACOVA_04921 are separated by 41 nucleotidesBACOVA_04921 and BACOVA_04922 are separated by 25 nucleotides BACOVA_04920: BACOVA_04920 - hypothetical protein, at 328,598 to 330,985 _04920 BACOVA_04921: BACOVA_04921 - TonB-linked outer membrane protein, SusC/RagA family, at 331,027 to 334,242 _04921 BACOVA_04922: BACOVA_04922 - SusD family protein, at 334,268 to 336,169 _04922 Position (kb) 331 332 333 334 335Strain fitness (log2 ratio) -2 -1 0 1 2at 330.046 kb on + strand, within BACOVA_04920at 330.061 kb on + strand, within BACOVA_04920at 330.062 kb on - strand, within BACOVA_04920at 330.073 kb on + strand, within BACOVA_04920at 330.106 kb on + strand, within BACOVA_04920at 330.106 kb on + strand, within BACOVA_04920at 330.122 kb on - strand, within BACOVA_04920at 330.142 kb on - strand, within BACOVA_04920at 330.142 kb on - strand, within BACOVA_04920at 330.147 kb on + strand, within BACOVA_04920at 330.252 kb on - strand, within BACOVA_04920at 330.252 kb on - strand, within BACOVA_04920at 330.296 kb on + strand, within BACOVA_04920at 330.297 kb on - strand, within BACOVA_04920at 330.323 kb on + strand, within BACOVA_04920at 330.323 kb on + strand, within BACOVA_04920at 330.402 kb on - strand, within BACOVA_04920at 330.416 kb on + strand, within BACOVA_04920at 330.417 kb on - strand, within BACOVA_04920at 330.417 kb on - strand, within BACOVA_04920at 330.423 kb on + strand, within BACOVA_04920at 330.427 kb on + strand, within BACOVA_04920at 330.427 kb on + strand, within BACOVA_04920at 330.428 kb on - strand, within BACOVA_04920at 330.537 kb on - strand, within BACOVA_04920at 330.581 kb on + strand, within BACOVA_04920at 330.592 kb on - strand, within BACOVA_04920at 330.600 kb on - strand, within BACOVA_04920at 330.630 kb on + strand, within BACOVA_04920at 330.631 kb on - strand, within BACOVA_04920at 330.655 kb on - strand, within BACOVA_04920at 330.655 kb on - strand, within BACOVA_04920at 330.665 kb on - strand, within BACOVA_04920at 330.668 kb on + strand, within BACOVA_04920at 330.668 kb on + strand, within BACOVA_04920at 330.674 kb on + strand, within BACOVA_04920at 330.674 kb on + strand, within BACOVA_04920at 330.675 kb on - strand, within BACOVA_04920at 330.675 kb on - strand, within BACOVA_04920at 330.758 kb on - strandat 330.940 kb on + strandat 330.940 kb on + strandat 330.940 kb on + strandat 330.941 kb on - strandat 330.944 kb on + strandat 330.945 kb on - strandat 330.969 kb on + strandat 330.970 kb on - strandat 330.983 kb on + strandat 331.011 kb on - strandat 331.023 kb on + strandat 331.041 kb on - strandat 331.041 kb on - strandat 331.046 kb on + strandat 331.052 kb on + strandat 331.053 kb on - strandat 331.053 kb on - strandat 331.053 kb on - strandat 331.056 kb on + strandat 331.057 kb on - strandat 331.098 kb on + strandat 331.172 kb on + strandat 331.173 kb on - strandat 331.198 kb on - strandat 331.245 kb on - strandat 331.245 kb on - strandat 331.253 kb on - strandat 331.257 kb on - strandat 331.257 kb on - strandat 331.260 kb on + strandat 331.306 kb on - strandat 331.361 kb on - strand, within BACOVA_04921at 331.396 kb on - strand, within BACOVA_04921at 331.419 kb on - strand, within BACOVA_04921at 331.430 kb on + strand, within BACOVA_04921at 331.430 kb on + strand, within BACOVA_04921at 331.465 kb on - strand, within BACOVA_04921at 331.570 kb on - strand, within BACOVA_04921at 331.593 kb on - strand, within BACOVA_04921at 331.665 kb on + strand, within BACOVA_04921at 331.665 kb on + strand, within BACOVA_04921at 331.665 kb on + strand, within BACOVA_04921at 331.669 kb on + strand, within BACOVA_04921at 331.753 kb on + strand, within BACOVA_04921at 331.811 kb on + strand, within BACOVA_04921at 331.812 kb on - strand, within BACOVA_04921at 331.812 kb on - strand, within BACOVA_04921at 331.848 kb on + strand, within BACOVA_04921at 331.848 kb on + strand, within BACOVA_04921at 331.849 kb on - strand, within BACOVA_04921at 331.866 kb on + strand, within BACOVA_04921at 331.869 kb on + strand, within BACOVA_04921at 331.873 kb on + strand, within BACOVA_04921at 331.873 kb on + strand, within BACOVA_04921at 331.894 kb on + strand, within BACOVA_04921at 331.964 kb on - strand, within BACOVA_04921at 331.964 kb on - strand, within BACOVA_04921at 331.967 kb on + strand, within BACOVA_04921at 331.974 kb on + strand, within BACOVA_04921at 332.006 kb on - strand, within BACOVA_04921at 332.007 kb on + strand, within BACOVA_04921at 332.007 kb on + strand, within BACOVA_04921at 332.008 kb on - strand, within BACOVA_04921at 332.073 kb on + strand, within BACOVA_04921at 332.074 kb on - strand, within BACOVA_04921at 332.151 kb on - strand, within BACOVA_04921at 332.176 kb on - strand, within BACOVA_04921at 332.224 kb on + strand, within BACOVA_04921at 332.227 kb on - strand, within BACOVA_04921at 332.248 kb on - strand, within BACOVA_04921at 332.346 kb on + strand, within BACOVA_04921at 332.346 kb on + strand, within BACOVA_04921at 332.373 kb on + strand, within BACOVA_04921at 332.374 kb on - strand, within BACOVA_04921at 332.466 kb on + strand, within BACOVA_04921at 332.512 kb on - strand, within BACOVA_04921at 332.542 kb on + strand, within BACOVA_04921at 332.550 kb on + strand, within BACOVA_04921at 332.550 kb on + strand, within BACOVA_04921at 332.550 kb on + strand, within BACOVA_04921at 332.614 kb on - strand, within BACOVA_04921at 332.614 kb on - strand, within BACOVA_04921at 332.734 kb on - strand, within BACOVA_04921at 332.767 kb on + strand, within BACOVA_04921at 332.767 kb on + strand, within BACOVA_04921at 332.768 kb on - strand, within BACOVA_04921at 332.768 kb on - strand, within BACOVA_04921at 332.779 kb on + strand, within BACOVA_04921at 332.779 kb on + strand, within BACOVA_04921at 332.875 kb on - strand, within BACOVA_04921at 332.902 kb on - strand, within BACOVA_04921at 332.922 kb on - strand, within BACOVA_04921at 332.933 kb on + strand, within BACOVA_04921at 332.934 kb on - strand, within BACOVA_04921at 332.990 kb on - strand, within BACOVA_04921at 333.045 kb on + strand, within BACOVA_04921at 333.045 kb on + strand, within BACOVA_04921at 333.053 kb on - strand, within BACOVA_04921at 333.055 kb on - strand, within BACOVA_04921at 333.064 kb on + strand, within BACOVA_04921at 333.070 kb on + strand, within BACOVA_04921at 333.071 kb on - strand, within BACOVA_04921at 333.108 kb on + strand, within BACOVA_04921at 333.109 kb on - strand, within BACOVA_04921at 333.117 kb on + strand, within BACOVA_04921at 333.118 kb on - strand, within BACOVA_04921at 333.228 kb on + strand, within BACOVA_04921at 333.269 kb on + strand, within BACOVA_04921at 333.346 kb on + strand, within BACOVA_04921at 333.360 kb on + strand, within BACOVA_04921at 333.433 kb on + strand, within BACOVA_04921at 333.434 kb on - strand, within BACOVA_04921at 333.453 kb on + strand, within BACOVA_04921at 333.469 kb on + strand, within BACOVA_04921at 333.493 kb on + strand, within BACOVA_04921at 333.561 kb on - strand, within BACOVA_04921at 333.679 kb on - strand, within BACOVA_04921at 333.730 kb on + strand, within BACOVA_04921at 333.730 kb on + strand, within BACOVA_04921at 333.731 kb on - strand, within BACOVA_04921at 333.731 kb on - strand, within BACOVA_04921at 333.732 kb on + strand, within BACOVA_04921at 333.733 kb on - strand, within BACOVA_04921at 333.765 kb on + strand, within BACOVA_04921at 333.765 kb on + strand, within BACOVA_04921at 333.766 kb on - strand, within BACOVA_04921at 333.861 kb on + strand, within BACOVA_04921at 333.874 kb on - strand, within BACOVA_04921at 333.905 kb on - strand, within BACOVA_04921at 333.981 kb on + strandat 333.981 kb on + strandat 333.989 kb on - strandat 333.989 kb on - strandat 334.093 kb on + strandat 334.098 kb on - strandat 334.098 kb on - strandat 334.132 kb on - strandat 334.187 kb on - strandat 334.210 kb on - strandat 334.213 kb on + strandat 334.215 kb on + strandat 334.274 kb on - strandat 334.281 kb on + strandat 334.282 kb on - strandat 334.287 kb on - strandat 334.307 kb on - strandat 334.377 kb on + strandat 334.377 kb on + strandat 334.422 kb on - strandat 334.526 kb on - strand, within BACOVA_04922at 334.542 kb on + strand, within BACOVA_04922at 334.542 kb on + strand, within BACOVA_04922at 334.597 kb on + strand, within BACOVA_04922at 334.597 kb on + strand, within BACOVA_04922at 334.598 kb on - strand, within BACOVA_04922at 334.617 kb on - strand, within BACOVA_04922at 334.671 kb on + strand, within BACOVA_04922at 334.706 kb on + strand, within BACOVA_04922at 334.707 kb on - strand, within BACOVA_04922at 334.707 kb on - strand, within BACOVA_04922at 334.740 kb on - strand, within BACOVA_04922at 334.770 kb on + strand, within BACOVA_04922at 334.771 kb on - strand, within BACOVA_04922at 334.869 kb on + strand, within BACOVA_04922at 334.869 kb on + strand, within BACOVA_04922at 334.870 kb on - strand, within BACOVA_04922at 334.870 kb on - strand, within BACOVA_04922at 334.875 kb on + strand, within BACOVA_04922at 334.876 kb on - strand, within BACOVA_04922at 334.876 kb on - strand, within BACOVA_04922at 334.876 kb on - strand, within BACOVA_04922at 334.892 kb on + strand, within BACOVA_04922at 334.892 kb on + strand, within BACOVA_04922at 334.937 kb on + strand, within BACOVA_04922at 335.055 kb on - strand, within BACOVA_04922at 335.057 kb on + strand, within BACOVA_04922at 335.076 kb on - strand, within BACOVA_04922at 335.089 kb on - strand, within BACOVA_04922at 335.149 kb on + strand, within BACOVA_04922at 335.226 kb on - strand, within BACOVA_04922at 335.227 kb on + strand, within BACOVA_04922at 335.227 kb on + strand, within BACOVA_04922at 335.227 kb on + strand, within BACOVA_04922at 335.228 kb on - strand, within BACOVA_04922at 335.230 kb on + strand, within BACOVA_04922at 335.231 kb on - strand, within BACOVA_04922

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C)
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330,046 + BACOVA_04920 0.61 +0.4
330,061 + BACOVA_04920 0.61 +0.5
330,062 - BACOVA_04920 0.61 +0.2
330,073 + BACOVA_04920 0.62 +0.4
330,106 + BACOVA_04920 0.63 +0.3
330,106 + BACOVA_04920 0.63 -0.2
330,122 - BACOVA_04920 0.64 +1.5
330,142 - BACOVA_04920 0.65 +0.6
330,142 - BACOVA_04920 0.65 -0.1
330,147 + BACOVA_04920 0.65 -0.7
330,252 - BACOVA_04920 0.69 -0.2
330,252 - BACOVA_04920 0.69 -0.0
330,296 + BACOVA_04920 0.71 +0.3
330,297 - BACOVA_04920 0.71 -0.7
330,323 + BACOVA_04920 0.72 -1.4
330,323 + BACOVA_04920 0.72 +0.4
330,402 - BACOVA_04920 0.76 -1.1
330,416 + BACOVA_04920 0.76 +0.0
330,417 - BACOVA_04920 0.76 +0.3
330,417 - BACOVA_04920 0.76 -0.2
330,423 + BACOVA_04920 0.76 +0.5
330,427 + BACOVA_04920 0.77 -1.0
330,427 + BACOVA_04920 0.77 -0.6
330,428 - BACOVA_04920 0.77 -0.3
330,537 - BACOVA_04920 0.81 +0.2
330,581 + BACOVA_04920 0.83 -0.6
330,592 - BACOVA_04920 0.84 -0.1
330,600 - BACOVA_04920 0.84 -0.1
330,630 + BACOVA_04920 0.85 -0.3
330,631 - BACOVA_04920 0.85 +0.5
330,655 - BACOVA_04920 0.86 -0.2
330,655 - BACOVA_04920 0.86 +0.8
330,665 - BACOVA_04920 0.87 +0.2
330,668 + BACOVA_04920 0.87 +0.3
330,668 + BACOVA_04920 0.87 +1.0
330,674 + BACOVA_04920 0.87 -0.3
330,674 + BACOVA_04920 0.87 +1.1
330,675 - BACOVA_04920 0.87 -0.4
330,675 - BACOVA_04920 0.87 -1.2
330,758 - -0.4
330,940 + -1.2
330,940 + +0.4
330,940 + +0.1
330,941 - +0.8
330,944 + -0.6
330,945 - +0.0
330,969 + +0.8
330,970 - +0.6
330,983 + -0.1
331,011 - -2.5
331,023 + -0.4
331,041 - +0.3
331,041 - -1.4
331,046 + -0.1
331,052 + -1.1
331,053 - -1.0
331,053 - -0.9
331,053 - -1.1
331,056 + -0.4
331,057 - -0.1
331,098 + +0.3
331,172 + +0.2
331,173 - +0.2
331,198 - +0.8
331,245 - -0.9
331,245 - +0.2
331,253 - -0.5
331,257 - +0.1
331,257 - -0.3
331,260 + -2.1
331,306 - +0.7
331,361 - BACOVA_04921 0.10 -0.2
331,396 - BACOVA_04921 0.11 +0.2
331,419 - BACOVA_04921 0.12 -0.2
331,430 + BACOVA_04921 0.13 -0.5
331,430 + BACOVA_04921 0.13 +0.3
331,465 - BACOVA_04921 0.14 -0.5
331,570 - BACOVA_04921 0.17 +1.9
331,593 - BACOVA_04921 0.18 +0.6
331,665 + BACOVA_04921 0.20 +0.3
331,665 + BACOVA_04921 0.20 +0.7
331,665 + BACOVA_04921 0.20 +0.6
331,669 + BACOVA_04921 0.20 +0.0
331,753 + BACOVA_04921 0.23 -0.9
331,811 + BACOVA_04921 0.24 -2.0
331,812 - BACOVA_04921 0.24 +0.4
331,812 - BACOVA_04921 0.24 +1.2
331,848 + BACOVA_04921 0.26 -0.2
331,848 + BACOVA_04921 0.26 -0.3
331,849 - BACOVA_04921 0.26 +0.2
331,866 + BACOVA_04921 0.26 -0.7
331,869 + BACOVA_04921 0.26 +0.3
331,873 + BACOVA_04921 0.26 +1.3
331,873 + BACOVA_04921 0.26 -0.2
331,894 + BACOVA_04921 0.27 -1.7
331,964 - BACOVA_04921 0.29 -0.4
331,964 - BACOVA_04921 0.29 -0.1
331,967 + BACOVA_04921 0.29 +1.0
331,974 + BACOVA_04921 0.29 -1.2
332,006 - BACOVA_04921 0.30 -0.8
332,007 + BACOVA_04921 0.30 +0.1
332,007 + BACOVA_04921 0.30 -0.1
332,008 - BACOVA_04921 0.31 +1.3
332,073 + BACOVA_04921 0.33 -0.2
332,074 - BACOVA_04921 0.33 +1.1
332,151 - BACOVA_04921 0.35 +0.3
332,176 - BACOVA_04921 0.36 +0.0
332,224 + BACOVA_04921 0.37 +0.2
332,227 - BACOVA_04921 0.37 +0.3
332,248 - BACOVA_04921 0.38 +1.6
332,346 + BACOVA_04921 0.41 -0.5
332,346 + BACOVA_04921 0.41 +1.3
332,373 + BACOVA_04921 0.42 -0.2
332,374 - BACOVA_04921 0.42 +0.3
332,466 + BACOVA_04921 0.45 -0.9
332,512 - BACOVA_04921 0.46 +1.7
332,542 + BACOVA_04921 0.47 -0.1
332,550 + BACOVA_04921 0.47 +0.4
332,550 + BACOVA_04921 0.47 -0.9
332,550 + BACOVA_04921 0.47 +0.3
332,614 - BACOVA_04921 0.49 -1.1
332,614 - BACOVA_04921 0.49 +0.9
332,734 - BACOVA_04921 0.53 -0.1
332,767 + BACOVA_04921 0.54 -0.7
332,767 + BACOVA_04921 0.54 -1.1
332,768 - BACOVA_04921 0.54 -0.1
332,768 - BACOVA_04921 0.54 -0.1
332,779 + BACOVA_04921 0.54 +0.7
332,779 + BACOVA_04921 0.54 -0.7
332,875 - BACOVA_04921 0.57 +0.1
332,902 - BACOVA_04921 0.58 -0.4
332,922 - BACOVA_04921 0.59 +0.2
332,933 + BACOVA_04921 0.59 -0.8
332,934 - BACOVA_04921 0.59 +0.1
332,990 - BACOVA_04921 0.61 +0.9
333,045 + BACOVA_04921 0.63 -0.9
333,045 + BACOVA_04921 0.63 +0.4
333,053 - BACOVA_04921 0.63 +0.1
333,055 - BACOVA_04921 0.63 -0.5
333,064 + BACOVA_04921 0.63 +0.3
333,070 + BACOVA_04921 0.64 -0.4
333,071 - BACOVA_04921 0.64 +0.9
333,108 + BACOVA_04921 0.65 -1.1
333,109 - BACOVA_04921 0.65 +0.6
333,117 + BACOVA_04921 0.65 -1.1
333,118 - BACOVA_04921 0.65 +0.1
333,228 + BACOVA_04921 0.68 -0.3
333,269 + BACOVA_04921 0.70 -2.3
333,346 + BACOVA_04921 0.72 +0.2
333,360 + BACOVA_04921 0.73 +0.4
333,433 + BACOVA_04921 0.75 -0.5
333,434 - BACOVA_04921 0.75 -0.7
333,453 + BACOVA_04921 0.75 -1.0
333,469 + BACOVA_04921 0.76 -0.1
333,493 + BACOVA_04921 0.77 -0.0
333,561 - BACOVA_04921 0.79 -0.4
333,679 - BACOVA_04921 0.82 -0.1
333,730 + BACOVA_04921 0.84 -0.9
333,730 + BACOVA_04921 0.84 -1.9
333,731 - BACOVA_04921 0.84 -0.7
333,731 - BACOVA_04921 0.84 -0.7
333,732 + BACOVA_04921 0.84 -0.2
333,733 - BACOVA_04921 0.84 +0.6
333,765 + BACOVA_04921 0.85 +0.4
333,765 + BACOVA_04921 0.85 -0.1
333,766 - BACOVA_04921 0.85 -0.0
333,861 + BACOVA_04921 0.88 -2.0
333,874 - BACOVA_04921 0.89 -0.0
333,905 - BACOVA_04921 0.89 -0.3
333,981 + -0.7
333,981 + -0.4
333,989 - +0.0
333,989 - -0.5
334,093 + +0.1
334,098 - +0.3
334,098 - -1.2
334,132 - -1.6
334,187 - +0.2
334,210 - +0.0
334,213 + -0.3
334,215 + +0.6
334,274 - -0.7
334,281 + -0.5
334,282 - -1.0
334,287 - +0.5
334,307 - +0.9
334,377 + +1.6
334,377 + +0.4
334,422 - -0.4
334,526 - BACOVA_04922 0.14 -1.2
334,542 + BACOVA_04922 0.14 -0.9
334,542 + BACOVA_04922 0.14 -0.2
334,597 + BACOVA_04922 0.17 +0.9
334,597 + BACOVA_04922 0.17 -0.3
334,598 - BACOVA_04922 0.17 +0.5
334,617 - BACOVA_04922 0.18 +0.4
334,671 + BACOVA_04922 0.21 -1.8
334,706 + BACOVA_04922 0.23 -0.4
334,707 - BACOVA_04922 0.23 -0.4
334,707 - BACOVA_04922 0.23 -0.1
334,740 - BACOVA_04922 0.25 +0.2
334,770 + BACOVA_04922 0.26 +1.4
334,771 - BACOVA_04922 0.26 +0.8
334,869 + BACOVA_04922 0.32 -1.1
334,869 + BACOVA_04922 0.32 -0.0
334,870 - BACOVA_04922 0.32 -0.3
334,870 - BACOVA_04922 0.32 -1.0
334,875 + BACOVA_04922 0.32 +0.2
334,876 - BACOVA_04922 0.32 -0.0
334,876 - BACOVA_04922 0.32 +0.6
334,876 - BACOVA_04922 0.32 +0.7
334,892 + BACOVA_04922 0.33 -0.5
334,892 + BACOVA_04922 0.33 -0.1
334,937 + BACOVA_04922 0.35 -1.0
335,055 - BACOVA_04922 0.41 +2.1
335,057 + BACOVA_04922 0.41 -0.2
335,076 - BACOVA_04922 0.42 -0.5
335,089 - BACOVA_04922 0.43 -0.0
335,149 + BACOVA_04922 0.46 -1.2
335,226 - BACOVA_04922 0.50 -0.4
335,227 + BACOVA_04922 0.50 +0.3
335,227 + BACOVA_04922 0.50 +0.8
335,227 + BACOVA_04922 0.50 -0.8
335,228 - BACOVA_04922 0.50 +0.1
335,230 + BACOVA_04922 0.51 +0.4
335,231 - BACOVA_04922 0.51 -2.3

Or see this region's nucleotide sequence