Experiment: Xylan from corn core 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04330 and BACOVA_04331 are separated by 242 nucleotides BACOVA_04331 and BACOVA_04332 are separated by 134 nucleotides BACOVA_04332 and BACOVA_04333 are separated by 51 nucleotides BACOVA_04333 and BACOVA_04334 overlap by 4 nucleotides
BACOVA_04330: BACOVA_04330 - hypothetical protein, at 214,983 to 215,636
_04330
BACOVA_04331: BACOVA_04331 - hypothetical protein, at 215,879 to 217,540
_04331
BACOVA_04332: BACOVA_04332 - tRNA-Cys, at 217,675 to 217,746
_04332
BACOVA_04333: BACOVA_04333 - hypothetical protein, at 217,798 to 218,013
_04333
BACOVA_04334: BACOVA_04334 - ferrous iron transport protein B, at 218,010 to 220,496
_04334
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 214.879 kb on + strand at 214.880 kb on - strand at 214.880 kb on - strand at 214.882 kb on + strand at 214.901 kb on - strand at 214.905 kb on + strand at 214.938 kb on + strand at 214.958 kb on - strand at 214.959 kb on + strand at 214.959 kb on + strand at 214.960 kb on - strand at 214.960 kb on - strand at 214.960 kb on - strand at 214.987 kb on + strand at 214.992 kb on + strand at 215.003 kb on + strand at 215.015 kb on + strand at 215.016 kb on - strand at 215.051 kb on - strand, within BACOVA_04330 at 215.051 kb on - strand, within BACOVA_04330 at 215.051 kb on - strand, within BACOVA_04330 at 215.096 kb on + strand, within BACOVA_04330 at 215.097 kb on - strand, within BACOVA_04330 at 215.097 kb on - strand, within BACOVA_04330 at 215.106 kb on - strand, within BACOVA_04330 at 215.120 kb on + strand, within BACOVA_04330 at 215.121 kb on - strand, within BACOVA_04330 at 215.123 kb on + strand, within BACOVA_04330 at 215.124 kb on - strand, within BACOVA_04330 at 215.157 kb on - strand, within BACOVA_04330 at 215.157 kb on - strand, within BACOVA_04330 at 215.159 kb on + strand, within BACOVA_04330 at 215.180 kb on + strand, within BACOVA_04330 at 215.184 kb on - strand, within BACOVA_04330 at 215.216 kb on + strand, within BACOVA_04330 at 215.219 kb on + strand, within BACOVA_04330 at 215.256 kb on - strand, within BACOVA_04330 at 215.267 kb on + strand, within BACOVA_04330 at 215.268 kb on - strand, within BACOVA_04330 at 215.277 kb on - strand, within BACOVA_04330 at 215.279 kb on + strand, within BACOVA_04330 at 215.279 kb on + strand, within BACOVA_04330 at 215.337 kb on - strand, within BACOVA_04330 at 215.396 kb on + strand, within BACOVA_04330 at 215.405 kb on + strand, within BACOVA_04330 at 215.406 kb on - strand, within BACOVA_04330 at 215.423 kb on + strand, within BACOVA_04330 at 215.424 kb on - strand, within BACOVA_04330 at 215.424 kb on - strand, within BACOVA_04330 at 215.435 kb on + strand, within BACOVA_04330 at 215.448 kb on - strand, within BACOVA_04330 at 215.456 kb on + strand, within BACOVA_04330 at 215.457 kb on - strand, within BACOVA_04330 at 215.457 kb on - strand, within BACOVA_04330 at 215.457 kb on - strand, within BACOVA_04330 at 215.465 kb on + strand, within BACOVA_04330 at 215.483 kb on + strand, within BACOVA_04330 at 215.484 kb on - strand, within BACOVA_04330 at 215.536 kb on + strand, within BACOVA_04330 at 215.542 kb on + strand, within BACOVA_04330 at 215.577 kb on + strand at 215.583 kb on - strand at 215.584 kb on + strand at 215.656 kb on - strand at 215.689 kb on + strand at 215.703 kb on - strand at 215.757 kb on + strand at 215.758 kb on - strand at 215.760 kb on - strand at 215.765 kb on + strand at 215.768 kb on + strand at 215.768 kb on + strand at 215.769 kb on - strand at 215.769 kb on - strand at 215.769 kb on - strand at 215.770 kb on + strand at 215.771 kb on - strand at 215.777 kb on + strand at 215.778 kb on - strand at 217.670 kb on - strand at 217.889 kb on - strand, within BACOVA_04333 at 217.950 kb on - strand, within BACOVA_04333 at 218.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C) remove 214,879 + -0.3 214,880 - +0.6 214,880 - -0.1 214,882 + -0.4 214,901 - +0.4 214,905 + -0.4 214,938 + -1.2 214,958 - -0.7 214,959 + +0.3 214,959 + -0.9 214,960 - -1.3 214,960 - -0.0 214,960 - +0.4 214,987 + -0.4 214,992 + -0.1 215,003 + -0.7 215,015 + +0.3 215,016 - -2.0 215,051 - BACOVA_04330 0.10 -1.0 215,051 - BACOVA_04330 0.10 -1.2 215,051 - BACOVA_04330 0.10 -1.8 215,096 + BACOVA_04330 0.17 -0.7 215,097 - BACOVA_04330 0.17 -0.7 215,097 - BACOVA_04330 0.17 +0.1 215,106 - BACOVA_04330 0.19 +0.1 215,120 + BACOVA_04330 0.21 -0.3 215,121 - BACOVA_04330 0.21 +1.4 215,123 + BACOVA_04330 0.21 +0.6 215,124 - BACOVA_04330 0.22 -0.7 215,157 - BACOVA_04330 0.27 +0.3 215,157 - BACOVA_04330 0.27 +0.1 215,159 + BACOVA_04330 0.27 -0.2 215,180 + BACOVA_04330 0.30 -0.3 215,184 - BACOVA_04330 0.31 +0.0 215,216 + BACOVA_04330 0.36 +0.9 215,219 + BACOVA_04330 0.36 +0.1 215,256 - BACOVA_04330 0.42 +0.0 215,267 + BACOVA_04330 0.43 -0.9 215,268 - BACOVA_04330 0.44 -0.3 215,277 - BACOVA_04330 0.45 +0.5 215,279 + BACOVA_04330 0.45 +0.3 215,279 + BACOVA_04330 0.45 +0.4 215,337 - BACOVA_04330 0.54 -0.5 215,396 + BACOVA_04330 0.63 +0.6 215,405 + BACOVA_04330 0.65 +0.6 215,406 - BACOVA_04330 0.65 -0.3 215,423 + BACOVA_04330 0.67 +0.8 215,424 - BACOVA_04330 0.67 -0.0 215,424 - BACOVA_04330 0.67 -0.6 215,435 + BACOVA_04330 0.69 -0.3 215,448 - BACOVA_04330 0.71 +1.1 215,456 + BACOVA_04330 0.72 -0.8 215,457 - BACOVA_04330 0.72 -0.6 215,457 - BACOVA_04330 0.72 -0.9 215,457 - BACOVA_04330 0.72 -0.7 215,465 + BACOVA_04330 0.74 +0.8 215,483 + BACOVA_04330 0.76 +0.3 215,484 - BACOVA_04330 0.77 +0.7 215,536 + BACOVA_04330 0.85 -1.1 215,542 + BACOVA_04330 0.85 -0.3 215,577 + -0.1 215,583 - +0.0 215,584 + +0.1 215,656 - -0.1 215,689 + +1.3 215,703 - -0.2 215,757 + -0.5 215,758 - -0.1 215,760 - -0.8 215,765 + +0.8 215,768 + +0.3 215,768 + +0.5 215,769 - -1.0 215,769 - +1.1 215,769 - -2.8 215,770 + +0.2 215,771 - -1.3 215,777 + -0.6 215,778 - -0.1 217,670 - +0.3 217,889 - BACOVA_04333 0.42 -0.7 217,950 - BACOVA_04333 0.70 -1.1 218,008 - -0.4
Or see this region's nucleotide sequence