Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03373

Experiment: Xylan from corn core 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03372 and BACOVA_03373 are separated by 210 nucleotidesBACOVA_03373 and BACOVA_03375 are separated by 47 nucleotides BACOVA_03372: BACOVA_03372 - carbohydrate binding domain protein, at 74,106 to 74,903 _03372 BACOVA_03373: BACOVA_03373 - DNA/RNA non-specific endonuclease, at 75,114 to 75,965 _03373 BACOVA_03375: BACOVA_03375 - hypothetical protein, at 76,013 to 77,566 _03375 Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1at 74.123 kb on + strandat 74.123 kb on + strandat 74.124 kb on - strandat 74.127 kb on + strandat 74.147 kb on + strandat 74.156 kb on + strandat 74.156 kb on + strandat 74.157 kb on - strandat 74.165 kb on + strandat 74.166 kb on - strandat 74.171 kb on + strandat 74.187 kb on + strand, within BACOVA_03372at 74.223 kb on + strand, within BACOVA_03372at 74.223 kb on + strand, within BACOVA_03372at 74.227 kb on + strand, within BACOVA_03372at 74.227 kb on + strand, within BACOVA_03372at 74.228 kb on - strand, within BACOVA_03372at 74.230 kb on - strand, within BACOVA_03372at 74.230 kb on - strand, within BACOVA_03372at 74.230 kb on - strand, within BACOVA_03372at 74.242 kb on + strand, within BACOVA_03372at 74.242 kb on + strand, within BACOVA_03372at 74.242 kb on + strand, within BACOVA_03372at 74.243 kb on - strand, within BACOVA_03372at 74.255 kb on + strand, within BACOVA_03372at 74.255 kb on + strand, within BACOVA_03372at 74.311 kb on + strand, within BACOVA_03372at 74.324 kb on + strand, within BACOVA_03372at 74.325 kb on - strand, within BACOVA_03372at 74.359 kb on + strand, within BACOVA_03372at 74.360 kb on - strand, within BACOVA_03372at 74.393 kb on + strand, within BACOVA_03372at 74.398 kb on + strand, within BACOVA_03372at 74.398 kb on + strand, within BACOVA_03372at 74.479 kb on + strand, within BACOVA_03372at 74.479 kb on + strand, within BACOVA_03372at 74.484 kb on - strand, within BACOVA_03372at 74.506 kb on - strand, within BACOVA_03372at 74.511 kb on - strand, within BACOVA_03372at 74.517 kb on - strand, within BACOVA_03372at 74.517 kb on - strand, within BACOVA_03372at 74.536 kb on + strand, within BACOVA_03372at 74.586 kb on - strand, within BACOVA_03372at 74.603 kb on - strand, within BACOVA_03372at 74.632 kb on + strand, within BACOVA_03372at 74.644 kb on - strand, within BACOVA_03372at 74.703 kb on - strand, within BACOVA_03372at 74.723 kb on + strand, within BACOVA_03372at 74.723 kb on + strand, within BACOVA_03372at 74.738 kb on + strand, within BACOVA_03372at 74.739 kb on - strand, within BACOVA_03372at 74.741 kb on + strand, within BACOVA_03372at 74.741 kb on + strand, within BACOVA_03372at 74.742 kb on - strand, within BACOVA_03372at 74.745 kb on + strand, within BACOVA_03372at 74.746 kb on - strand, within BACOVA_03372at 74.761 kb on + strand, within BACOVA_03372at 74.761 kb on + strand, within BACOVA_03372at 74.761 kb on + strand, within BACOVA_03372at 74.762 kb on - strand, within BACOVA_03372at 74.762 kb on - strand, within BACOVA_03372at 74.775 kb on + strand, within BACOVA_03372at 74.815 kb on + strand, within BACOVA_03372at 74.836 kb on - strandat 74.906 kb on + strandat 74.907 kb on - strandat 74.951 kb on + strandat 74.968 kb on + strandat 74.969 kb on - strandat 74.969 kb on - strandat 74.975 kb on - strandat 75.041 kb on + strandat 75.041 kb on + strandat 75.041 kb on + strandat 75.042 kb on - strandat 75.062 kb on + strandat 75.073 kb on + strandat 75.075 kb on + strandat 75.075 kb on + strandat 75.098 kb on + strandat 75.100 kb on + strandat 75.112 kb on - strandat 75.130 kb on + strandat 75.130 kb on + strandat 75.133 kb on - strandat 75.151 kb on + strandat 75.152 kb on - strandat 75.157 kb on + strandat 75.186 kb on - strandat 75.186 kb on - strandat 75.221 kb on - strand, within BACOVA_03373at 75.227 kb on - strand, within BACOVA_03373at 75.270 kb on + strand, within BACOVA_03373at 75.270 kb on + strand, within BACOVA_03373at 75.296 kb on - strand, within BACOVA_03373at 75.321 kb on - strand, within BACOVA_03373at 75.326 kb on + strand, within BACOVA_03373at 75.372 kb on - strand, within BACOVA_03373at 75.398 kb on + strand, within BACOVA_03373at 75.405 kb on - strand, within BACOVA_03373at 75.432 kb on + strand, within BACOVA_03373at 75.433 kb on - strand, within BACOVA_03373at 75.441 kb on - strand, within BACOVA_03373at 75.441 kb on - strand, within BACOVA_03373at 75.441 kb on - strand, within BACOVA_03373at 75.473 kb on + strand, within BACOVA_03373at 75.474 kb on - strand, within BACOVA_03373at 75.521 kb on + strand, within BACOVA_03373at 75.548 kb on + strand, within BACOVA_03373at 75.549 kb on - strand, within BACOVA_03373at 75.549 kb on - strand, within BACOVA_03373at 75.607 kb on + strand, within BACOVA_03373at 75.608 kb on - strand, within BACOVA_03373at 75.608 kb on - strand, within BACOVA_03373at 75.629 kb on + strand, within BACOVA_03373at 75.629 kb on + strand, within BACOVA_03373at 75.641 kb on + strand, within BACOVA_03373at 75.642 kb on - strand, within BACOVA_03373at 75.649 kb on - strand, within BACOVA_03373at 75.649 kb on - strand, within BACOVA_03373at 75.649 kb on - strand, within BACOVA_03373at 75.649 kb on - strand, within BACOVA_03373at 75.649 kb on - strand, within BACOVA_03373at 75.649 kb on - strand, within BACOVA_03373at 75.650 kb on - strand, within BACOVA_03373at 75.653 kb on - strand, within BACOVA_03373at 75.674 kb on + strand, within BACOVA_03373at 75.696 kb on + strand, within BACOVA_03373at 75.698 kb on + strand, within BACOVA_03373at 75.713 kb on + strand, within BACOVA_03373at 75.735 kb on + strand, within BACOVA_03373at 75.735 kb on + strand, within BACOVA_03373at 75.736 kb on - strand, within BACOVA_03373at 75.738 kb on + strand, within BACOVA_03373at 75.738 kb on + strand, within BACOVA_03373at 75.739 kb on - strand, within BACOVA_03373at 75.739 kb on - strand, within BACOVA_03373at 75.801 kb on - strand, within BACOVA_03373at 75.801 kb on - strand, within BACOVA_03373at 75.840 kb on + strand, within BACOVA_03373at 75.841 kb on - strand, within BACOVA_03373at 75.841 kb on - strand, within BACOVA_03373at 75.841 kb on - strand, within BACOVA_03373at 75.853 kb on + strand, within BACOVA_03373at 75.905 kb on + strandat 75.929 kb on + strandat 75.934 kb on - strandat 75.977 kb on + strandat 75.977 kb on + strandat 76.023 kb on - strandat 76.161 kb on - strandat 76.178 kb on - strand, within BACOVA_03375at 76.179 kb on + strand, within BACOVA_03375at 76.180 kb on - strand, within BACOVA_03375at 76.199 kb on + strand, within BACOVA_03375at 76.211 kb on + strand, within BACOVA_03375at 76.212 kb on - strand, within BACOVA_03375at 76.212 kb on - strand, within BACOVA_03375at 76.212 kb on - strand, within BACOVA_03375at 76.214 kb on - strand, within BACOVA_03375at 76.225 kb on + strand, within BACOVA_03375at 76.246 kb on + strand, within BACOVA_03375at 76.246 kb on + strand, within BACOVA_03375at 76.296 kb on - strand, within BACOVA_03375at 76.296 kb on - strand, within BACOVA_03375at 76.296 kb on - strand, within BACOVA_03375at 76.382 kb on + strand, within BACOVA_03375at 76.383 kb on - strand, within BACOVA_03375at 76.440 kb on + strand, within BACOVA_03375at 76.496 kb on + strand, within BACOVA_03375at 76.497 kb on - strand, within BACOVA_03375at 76.503 kb on + strand, within BACOVA_03375at 76.532 kb on - strand, within BACOVA_03375at 76.543 kb on - strand, within BACOVA_03375at 76.555 kb on - strand, within BACOVA_03375at 76.602 kb on - strand, within BACOVA_03375at 76.644 kb on + strand, within BACOVA_03375at 76.644 kb on + strand, within BACOVA_03375at 76.645 kb on - strand, within BACOVA_03375at 76.667 kb on - strand, within BACOVA_03375at 76.675 kb on - strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.678 kb on + strand, within BACOVA_03375at 76.701 kb on + strand, within BACOVA_03375at 76.752 kb on + strand, within BACOVA_03375at 76.752 kb on + strand, within BACOVA_03375at 76.753 kb on - strand, within BACOVA_03375at 76.753 kb on - strand, within BACOVA_03375at 76.755 kb on - strand, within BACOVA_03375at 76.756 kb on + strand, within BACOVA_03375at 76.768 kb on + strand, within BACOVA_03375at 76.769 kb on - strand, within BACOVA_03375at 76.769 kb on - strand, within BACOVA_03375at 76.769 kb on - strand, within BACOVA_03375at 76.791 kb on + strand, within BACOVA_03375at 76.792 kb on - strand, within BACOVA_03375at 76.792 kb on - strand, within BACOVA_03375at 76.811 kb on - strand, within BACOVA_03375at 76.864 kb on + strand, within BACOVA_03375at 76.869 kb on - strand, within BACOVA_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C)
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74,123 + +0.5
74,123 + +0.5
74,124 - -2.5
74,127 + -0.4
74,147 + -0.5
74,156 + -1.3
74,156 + +0.0
74,157 - +0.9
74,165 + -0.3
74,166 - +0.3
74,171 + -0.9
74,187 + BACOVA_03372 0.10 +0.2
74,223 + BACOVA_03372 0.15 -0.5
74,223 + BACOVA_03372 0.15 -0.4
74,227 + BACOVA_03372 0.15 +0.0
74,227 + BACOVA_03372 0.15 -0.3
74,228 - BACOVA_03372 0.15 -1.3
74,230 - BACOVA_03372 0.16 -0.2
74,230 - BACOVA_03372 0.16 +0.0
74,230 - BACOVA_03372 0.16 -0.8
74,242 + BACOVA_03372 0.17 +0.8
74,242 + BACOVA_03372 0.17 +0.1
74,242 + BACOVA_03372 0.17 -0.1
74,243 - BACOVA_03372 0.17 -0.5
74,255 + BACOVA_03372 0.19 -0.0
74,255 + BACOVA_03372 0.19 -0.6
74,311 + BACOVA_03372 0.26 +0.9
74,324 + BACOVA_03372 0.27 -0.1
74,325 - BACOVA_03372 0.27 -0.6
74,359 + BACOVA_03372 0.32 +0.1
74,360 - BACOVA_03372 0.32 -0.7
74,393 + BACOVA_03372 0.36 -0.1
74,398 + BACOVA_03372 0.37 -0.8
74,398 + BACOVA_03372 0.37 -0.5
74,479 + BACOVA_03372 0.47 -0.6
74,479 + BACOVA_03372 0.47 +0.1
74,484 - BACOVA_03372 0.47 -0.2
74,506 - BACOVA_03372 0.50 +0.0
74,511 - BACOVA_03372 0.51 +0.5
74,517 - BACOVA_03372 0.52 -0.5
74,517 - BACOVA_03372 0.52 +0.6
74,536 + BACOVA_03372 0.54 +0.9
74,586 - BACOVA_03372 0.60 -0.4
74,603 - BACOVA_03372 0.62 -0.1
74,632 + BACOVA_03372 0.66 +0.4
74,644 - BACOVA_03372 0.67 -1.0
74,703 - BACOVA_03372 0.75 +0.2
74,723 + BACOVA_03372 0.77 +0.2
74,723 + BACOVA_03372 0.77 +1.3
74,738 + BACOVA_03372 0.79 -0.5
74,739 - BACOVA_03372 0.79 +1.1
74,741 + BACOVA_03372 0.80 +0.3
74,741 + BACOVA_03372 0.80 +0.0
74,742 - BACOVA_03372 0.80 -1.1
74,745 + BACOVA_03372 0.80 -0.8
74,746 - BACOVA_03372 0.80 +0.1
74,761 + BACOVA_03372 0.82 -1.5
74,761 + BACOVA_03372 0.82 -0.6
74,761 + BACOVA_03372 0.82 +0.2
74,762 - BACOVA_03372 0.82 -0.3
74,762 - BACOVA_03372 0.82 +0.1
74,775 + BACOVA_03372 0.84 +0.1
74,815 + BACOVA_03372 0.89 -0.2
74,836 - -0.0
74,906 + -0.9
74,907 - -0.2
74,951 + -0.3
74,968 + +0.1
74,969 - +0.2
74,969 - +0.3
74,975 - +0.7
75,041 + -0.3
75,041 + +0.5
75,041 + +0.0
75,042 - +0.1
75,062 + -0.9
75,073 + -0.1
75,075 + -0.0
75,075 + +0.0
75,098 + -0.8
75,100 + +0.2
75,112 - +0.7
75,130 + +0.0
75,130 + -0.3
75,133 - +0.5
75,151 + +0.1
75,152 - +0.3
75,157 + -0.7
75,186 - +0.3
75,186 - -0.2
75,221 - BACOVA_03373 0.13 -0.7
75,227 - BACOVA_03373 0.13 +0.6
75,270 + BACOVA_03373 0.18 +0.1
75,270 + BACOVA_03373 0.18 +0.1
75,296 - BACOVA_03373 0.21 -0.3
75,321 - BACOVA_03373 0.24 -0.7
75,326 + BACOVA_03373 0.25 -0.3
75,372 - BACOVA_03373 0.30 -1.0
75,398 + BACOVA_03373 0.33 -0.0
75,405 - BACOVA_03373 0.34 -0.7
75,432 + BACOVA_03373 0.37 +0.9
75,433 - BACOVA_03373 0.37 -0.2
75,441 - BACOVA_03373 0.38 -0.3
75,441 - BACOVA_03373 0.38 -0.6
75,441 - BACOVA_03373 0.38 +1.3
75,473 + BACOVA_03373 0.42 -0.3
75,474 - BACOVA_03373 0.42 -0.6
75,521 + BACOVA_03373 0.48 +0.0
75,548 + BACOVA_03373 0.51 -0.2
75,549 - BACOVA_03373 0.51 +0.0
75,549 - BACOVA_03373 0.51 +0.6
75,607 + BACOVA_03373 0.58 -0.4
75,608 - BACOVA_03373 0.58 +0.2
75,608 - BACOVA_03373 0.58 +0.6
75,629 + BACOVA_03373 0.60 -0.2
75,629 + BACOVA_03373 0.60 -1.0
75,641 + BACOVA_03373 0.62 -0.8
75,642 - BACOVA_03373 0.62 -0.2
75,649 - BACOVA_03373 0.63 +0.7
75,649 - BACOVA_03373 0.63 -0.2
75,649 - BACOVA_03373 0.63 -0.8
75,649 - BACOVA_03373 0.63 -0.3
75,649 - BACOVA_03373 0.63 +0.2
75,649 - BACOVA_03373 0.63 +0.2
75,650 - BACOVA_03373 0.63 -1.0
75,653 - BACOVA_03373 0.63 +0.5
75,674 + BACOVA_03373 0.66 +1.6
75,696 + BACOVA_03373 0.68 +0.2
75,698 + BACOVA_03373 0.69 -0.1
75,713 + BACOVA_03373 0.70 +0.0
75,735 + BACOVA_03373 0.73 +0.5
75,735 + BACOVA_03373 0.73 +0.2
75,736 - BACOVA_03373 0.73 -0.4
75,738 + BACOVA_03373 0.73 -0.1
75,738 + BACOVA_03373 0.73 -1.7
75,739 - BACOVA_03373 0.73 +0.3
75,739 - BACOVA_03373 0.73 -0.5
75,801 - BACOVA_03373 0.81 +1.4
75,801 - BACOVA_03373 0.81 -0.6
75,840 + BACOVA_03373 0.85 -1.0
75,841 - BACOVA_03373 0.85 +0.7
75,841 - BACOVA_03373 0.85 -0.9
75,841 - BACOVA_03373 0.85 -0.7
75,853 + BACOVA_03373 0.87 -0.2
75,905 + +0.0
75,929 + +0.2
75,934 - -0.2
75,977 + -0.3
75,977 + -0.3
76,023 - +0.0
76,161 - -0.6
76,178 - BACOVA_03375 0.11 -0.5
76,179 + BACOVA_03375 0.11 +0.5
76,180 - BACOVA_03375 0.11 -1.8
76,199 + BACOVA_03375 0.12 -0.8
76,211 + BACOVA_03375 0.13 +0.3
76,212 - BACOVA_03375 0.13 -1.2
76,212 - BACOVA_03375 0.13 -0.5
76,212 - BACOVA_03375 0.13 -0.3
76,214 - BACOVA_03375 0.13 -0.2
76,225 + BACOVA_03375 0.14 +0.2
76,246 + BACOVA_03375 0.15 +0.2
76,246 + BACOVA_03375 0.15 +0.9
76,296 - BACOVA_03375 0.18 -1.1
76,296 - BACOVA_03375 0.18 +1.0
76,296 - BACOVA_03375 0.18 +1.0
76,382 + BACOVA_03375 0.24 +0.3
76,383 - BACOVA_03375 0.24 -0.2
76,440 + BACOVA_03375 0.27 +0.5
76,496 + BACOVA_03375 0.31 +0.2
76,497 - BACOVA_03375 0.31 -1.0
76,503 + BACOVA_03375 0.32 +0.1
76,532 - BACOVA_03375 0.33 +0.2
76,543 - BACOVA_03375 0.34 +0.3
76,555 - BACOVA_03375 0.35 +0.7
76,602 - BACOVA_03375 0.38 -0.1
76,644 + BACOVA_03375 0.41 +0.1
76,644 + BACOVA_03375 0.41 -0.4
76,645 - BACOVA_03375 0.41 -0.3
76,667 - BACOVA_03375 0.42 -1.1
76,675 - BACOVA_03375 0.43 -0.2
76,678 + BACOVA_03375 0.43 +0.1
76,678 + BACOVA_03375 0.43 -1.2
76,678 + BACOVA_03375 0.43 -0.2
76,678 + BACOVA_03375 0.43 +1.7
76,701 + BACOVA_03375 0.44 +0.2
76,752 + BACOVA_03375 0.48 +0.3
76,752 + BACOVA_03375 0.48 -0.2
76,753 - BACOVA_03375 0.48 -0.5
76,753 - BACOVA_03375 0.48 +0.0
76,755 - BACOVA_03375 0.48 +0.6
76,756 + BACOVA_03375 0.48 -0.4
76,768 + BACOVA_03375 0.49 -0.4
76,769 - BACOVA_03375 0.49 -0.8
76,769 - BACOVA_03375 0.49 +0.1
76,769 - BACOVA_03375 0.49 -0.3
76,791 + BACOVA_03375 0.50 -1.1
76,792 - BACOVA_03375 0.50 +0.8
76,792 - BACOVA_03375 0.50 +0.3
76,811 - BACOVA_03375 0.51 +0.6
76,864 + BACOVA_03375 0.55 +0.4
76,869 - BACOVA_03375 0.55 +0.2

Or see this region's nucleotide sequence