Experiment: Xylan from corn core 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02309 and BACOVA_02310 are separated by 12 nucleotides BACOVA_02310 and BACOVA_02312 are separated by 23 nucleotides BACOVA_02312 and BACOVA_02311 overlap by 68 nucleotides BACOVA_02311 and BACOVA_02313 are separated by 59 nucleotides BACOVA_02313 and BACOVA_02314 are separated by 82 nucleotides
BACOVA_02309: BACOVA_02309 - DNA-binding helix-turn-helix protein, at 77,559 to 77,843
_02309
BACOVA_02310: BACOVA_02310 - hypothetical protein, at 77,856 to 78,038
_02310
BACOVA_02312: BACOVA_02312 - hypothetical protein, at 78,062 to 78,805
_02312
BACOVA_02311: BACOVA_02311 - hypothetical protein, at 78,738 to 78,881
_02311
BACOVA_02313: BACOVA_02313 - hypothetical protein, at 78,941 to 79,579
_02313
BACOVA_02314: BACOVA_02314 - hypothetical protein, at 79,662 to 80,447
_02314
Position (kb) 78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 77.744 kb on + strand, within BACOVA_02309 at 77.744 kb on + strand, within BACOVA_02309 at 77.744 kb on + strand, within BACOVA_02309 at 77.744 kb on + strand, within BACOVA_02309 at 77.836 kb on - strand at 77.880 kb on + strand, within BACOVA_02310 at 77.882 kb on + strand, within BACOVA_02310 at 78.000 kb on - strand, within BACOVA_02310 at 78.009 kb on + strand, within BACOVA_02310 at 78.122 kb on + strand at 78.124 kb on + strand at 78.125 kb on - strand at 78.130 kb on - strand at 78.144 kb on + strand, within BACOVA_02312 at 78.145 kb on - strand, within BACOVA_02312 at 78.145 kb on - strand, within BACOVA_02312 at 78.145 kb on - strand, within BACOVA_02312 at 78.145 kb on - strand, within BACOVA_02312 at 78.145 kb on - strand, within BACOVA_02312 at 78.148 kb on + strand, within BACOVA_02312 at 78.148 kb on + strand, within BACOVA_02312 at 78.155 kb on + strand, within BACOVA_02312 at 78.155 kb on + strand, within BACOVA_02312 at 78.156 kb on - strand, within BACOVA_02312 at 78.156 kb on - strand, within BACOVA_02312 at 78.156 kb on - strand, within BACOVA_02312 at 78.189 kb on + strand, within BACOVA_02312 at 78.213 kb on + strand, within BACOVA_02312 at 78.213 kb on + strand, within BACOVA_02312 at 78.213 kb on + strand, within BACOVA_02312 at 78.214 kb on - strand, within BACOVA_02312 at 78.233 kb on + strand, within BACOVA_02312 at 78.234 kb on - strand, within BACOVA_02312 at 78.234 kb on - strand, within BACOVA_02312 at 78.234 kb on - strand, within BACOVA_02312 at 78.282 kb on + strand, within BACOVA_02312 at 78.282 kb on + strand, within BACOVA_02312 at 78.283 kb on - strand, within BACOVA_02312 at 78.287 kb on - strand, within BACOVA_02312 at 78.287 kb on - strand, within BACOVA_02312 at 78.292 kb on + strand, within BACOVA_02312 at 78.331 kb on + strand, within BACOVA_02312 at 78.335 kb on + strand, within BACOVA_02312 at 78.373 kb on + strand, within BACOVA_02312 at 78.384 kb on - strand, within BACOVA_02312 at 78.418 kb on + strand, within BACOVA_02312 at 78.428 kb on + strand, within BACOVA_02312 at 78.491 kb on - strand, within BACOVA_02312 at 78.502 kb on + strand, within BACOVA_02312 at 78.518 kb on - strand, within BACOVA_02312 at 78.521 kb on + strand, within BACOVA_02312 at 78.571 kb on - strand, within BACOVA_02312 at 78.591 kb on + strand, within BACOVA_02312 at 78.592 kb on - strand, within BACOVA_02312 at 78.626 kb on + strand, within BACOVA_02312 at 78.629 kb on - strand, within BACOVA_02312 at 78.643 kb on + strand, within BACOVA_02312 at 78.644 kb on - strand, within BACOVA_02312 at 78.653 kb on - strand, within BACOVA_02312 at 78.687 kb on - strand, within BACOVA_02312 at 78.702 kb on - strand, within BACOVA_02312 at 78.709 kb on + strand, within BACOVA_02312 at 78.722 kb on + strand, within BACOVA_02312 at 78.722 kb on + strand, within BACOVA_02312 at 78.786 kb on - strand at 78.786 kb on - strand at 78.838 kb on + strand, within BACOVA_02311 at 78.889 kb on - strand at 78.926 kb on - strand at 78.945 kb on - strand at 78.945 kb on - strand at 78.962 kb on + strand at 78.966 kb on - strand at 78.977 kb on - strand at 79.036 kb on + strand, within BACOVA_02313 at 79.037 kb on - strand, within BACOVA_02313 at 79.038 kb on + strand, within BACOVA_02313 at 79.039 kb on - strand, within BACOVA_02313 at 79.049 kb on + strand, within BACOVA_02313 at 79.057 kb on + strand, within BACOVA_02313 at 79.057 kb on + strand, within BACOVA_02313 at 79.057 kb on + strand, within BACOVA_02313 at 79.070 kb on + strand, within BACOVA_02313 at 79.070 kb on + strand, within BACOVA_02313 at 79.202 kb on + strand, within BACOVA_02313 at 79.233 kb on - strand, within BACOVA_02313 at 79.242 kb on + strand, within BACOVA_02313 at 79.243 kb on - strand, within BACOVA_02313 at 79.448 kb on - strand, within BACOVA_02313 at 79.448 kb on - strand, within BACOVA_02313 at 79.457 kb on + strand, within BACOVA_02313 at 79.458 kb on - strand, within BACOVA_02313 at 79.568 kb on - strand at 79.702 kb on - strand at 79.702 kb on - strand at 79.813 kb on + strand, within BACOVA_02314 at 79.814 kb on - strand, within BACOVA_02314 at 79.855 kb on + strand, within BACOVA_02314 at 79.856 kb on - strand, within BACOVA_02314
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/mL (C) remove 77,744 + BACOVA_02309 0.65 -1.4 77,744 + BACOVA_02309 0.65 +0.8 77,744 + BACOVA_02309 0.65 +0.2 77,744 + BACOVA_02309 0.65 +0.4 77,836 - +0.8 77,880 + BACOVA_02310 0.13 -0.7 77,882 + BACOVA_02310 0.14 -0.7 78,000 - BACOVA_02310 0.79 -0.7 78,009 + BACOVA_02310 0.84 -0.9 78,122 + +0.6 78,124 + +0.9 78,125 - +0.1 78,130 - -0.3 78,144 + BACOVA_02312 0.11 +1.0 78,145 - BACOVA_02312 0.11 -0.4 78,145 - BACOVA_02312 0.11 -0.0 78,145 - BACOVA_02312 0.11 -0.5 78,145 - BACOVA_02312 0.11 +0.1 78,145 - BACOVA_02312 0.11 +0.4 78,148 + BACOVA_02312 0.12 +0.3 78,148 + BACOVA_02312 0.12 +1.1 78,155 + BACOVA_02312 0.12 -0.4 78,155 + BACOVA_02312 0.12 +0.4 78,156 - BACOVA_02312 0.13 +0.0 78,156 - BACOVA_02312 0.13 -0.2 78,156 - BACOVA_02312 0.13 +0.1 78,189 + BACOVA_02312 0.17 -0.7 78,213 + BACOVA_02312 0.20 +0.6 78,213 + BACOVA_02312 0.20 +0.3 78,213 + BACOVA_02312 0.20 -0.7 78,214 - BACOVA_02312 0.20 +0.6 78,233 + BACOVA_02312 0.23 -0.4 78,234 - BACOVA_02312 0.23 -0.3 78,234 - BACOVA_02312 0.23 +0.9 78,234 - BACOVA_02312 0.23 -0.8 78,282 + BACOVA_02312 0.30 +0.3 78,282 + BACOVA_02312 0.30 -0.3 78,283 - BACOVA_02312 0.30 -0.4 78,287 - BACOVA_02312 0.30 -0.3 78,287 - BACOVA_02312 0.30 +0.9 78,292 + BACOVA_02312 0.31 -1.0 78,331 + BACOVA_02312 0.36 -0.9 78,335 + BACOVA_02312 0.37 -0.4 78,373 + BACOVA_02312 0.42 -0.8 78,384 - BACOVA_02312 0.43 -0.2 78,418 + BACOVA_02312 0.48 -0.2 78,428 + BACOVA_02312 0.49 -0.2 78,491 - BACOVA_02312 0.58 -0.1 78,502 + BACOVA_02312 0.59 -0.4 78,518 - BACOVA_02312 0.61 -1.4 78,521 + BACOVA_02312 0.62 -0.5 78,571 - BACOVA_02312 0.68 -0.0 78,591 + BACOVA_02312 0.71 -0.4 78,592 - BACOVA_02312 0.71 -0.4 78,626 + BACOVA_02312 0.76 -1.0 78,629 - BACOVA_02312 0.76 -0.3 78,643 + BACOVA_02312 0.78 +1.6 78,644 - BACOVA_02312 0.78 +1.3 78,653 - BACOVA_02312 0.79 -0.9 78,687 - BACOVA_02312 0.84 -0.0 78,702 - BACOVA_02312 0.86 -0.8 78,709 + BACOVA_02312 0.87 +0.6 78,722 + BACOVA_02312 0.89 +0.4 78,722 + BACOVA_02312 0.89 -1.1 78,786 - +0.3 78,786 - -0.4 78,838 + BACOVA_02311 0.69 -2.2 78,889 - +0.0 78,926 - -0.8 78,945 - -0.1 78,945 - -0.5 78,962 + -1.3 78,966 - -0.2 78,977 - -0.7 79,036 + BACOVA_02313 0.15 -0.4 79,037 - BACOVA_02313 0.15 -0.6 79,038 + BACOVA_02313 0.15 -1.2 79,039 - BACOVA_02313 0.15 -0.3 79,049 + BACOVA_02313 0.17 +0.6 79,057 + BACOVA_02313 0.18 -0.7 79,057 + BACOVA_02313 0.18 +0.0 79,057 + BACOVA_02313 0.18 +0.6 79,070 + BACOVA_02313 0.20 +1.0 79,070 + BACOVA_02313 0.20 -0.4 79,202 + BACOVA_02313 0.41 +0.8 79,233 - BACOVA_02313 0.46 -0.7 79,242 + BACOVA_02313 0.47 +0.5 79,243 - BACOVA_02313 0.47 +0.2 79,448 - BACOVA_02313 0.79 +0.3 79,448 - BACOVA_02313 0.79 +1.2 79,457 + BACOVA_02313 0.81 -0.1 79,458 - BACOVA_02313 0.81 -3.1 79,568 - +0.7 79,702 - +0.9 79,702 - -0.0 79,813 + BACOVA_02314 0.19 -0.5 79,814 - BACOVA_02314 0.19 -0.5 79,855 + BACOVA_02314 0.25 +1.0 79,856 - BACOVA_02314 0.25 +0.5
Or see this region's nucleotide sequence