Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04210

Experiment: Inulin from chicory 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04208 and BACOVA_04209 overlap by 19 nucleotidesBACOVA_04209 and BACOVA_04210 are separated by 1 nucleotidesBACOVA_04210 and BACOVA_04211 are separated by 212 nucleotides BACOVA_04208: BACOVA_04208 - hypothetical protein, at 86,168 to 87,403 _04208 BACOVA_04209: BACOVA_04209 - hypothetical protein, at 87,385 to 87,645 _04209 BACOVA_04210: BACOVA_04210 - histidinol phosphate phosphatase HisJ family, at 87,647 to 88,429 _04210 BACOVA_04211: BACOVA_04211 - ABC transporter, ATP-binding protein, at 88,642 to 90,510 _04211 Position (kb) 87 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.658 kb on - strand, within BACOVA_04208at 86.662 kb on - strand, within BACOVA_04208at 86.666 kb on - strand, within BACOVA_04208at 86.695 kb on + strand, within BACOVA_04208at 86.740 kb on - strand, within BACOVA_04208at 86.907 kb on + strand, within BACOVA_04208at 86.907 kb on + strand, within BACOVA_04208at 86.932 kb on - strand, within BACOVA_04208at 86.934 kb on + strand, within BACOVA_04208at 86.935 kb on - strand, within BACOVA_04208at 86.969 kb on - strand, within BACOVA_04208at 86.974 kb on - strand, within BACOVA_04208at 86.976 kb on + strand, within BACOVA_04208at 86.977 kb on - strand, within BACOVA_04208at 87.031 kb on + strand, within BACOVA_04208at 87.072 kb on + strand, within BACOVA_04208at 87.073 kb on - strand, within BACOVA_04208at 87.095 kb on + strand, within BACOVA_04208at 87.095 kb on + strand, within BACOVA_04208at 87.096 kb on - strand, within BACOVA_04208at 87.096 kb on - strand, within BACOVA_04208at 87.097 kb on + strand, within BACOVA_04208at 87.098 kb on - strand, within BACOVA_04208at 87.098 kb on - strand, within BACOVA_04208at 87.139 kb on - strand, within BACOVA_04208at 87.139 kb on - strand, within BACOVA_04208at 87.165 kb on + strand, within BACOVA_04208at 87.204 kb on - strand, within BACOVA_04208at 87.206 kb on + strand, within BACOVA_04208at 87.207 kb on - strand, within BACOVA_04208at 87.207 kb on - strand, within BACOVA_04208at 87.242 kb on + strand, within BACOVA_04208at 87.245 kb on - strand, within BACOVA_04208at 87.247 kb on + strand, within BACOVA_04208at 87.248 kb on - strand, within BACOVA_04208at 87.250 kb on + strand, within BACOVA_04208at 87.251 kb on - strand, within BACOVA_04208at 87.251 kb on - strand, within BACOVA_04208at 87.251 kb on - strand, within BACOVA_04208at 87.283 kb on + strandat 87.283 kb on + strandat 87.329 kb on - strandat 87.329 kb on - strandat 87.332 kb on - strandat 87.332 kb on - strandat 87.343 kb on + strandat 87.347 kb on + strandat 87.348 kb on - strandat 87.429 kb on + strand, within BACOVA_04209at 87.455 kb on + strand, within BACOVA_04209at 87.456 kb on - strand, within BACOVA_04209at 87.460 kb on - strand, within BACOVA_04209at 87.460 kb on - strand, within BACOVA_04209at 87.507 kb on + strand, within BACOVA_04209at 87.507 kb on + strand, within BACOVA_04209at 87.508 kb on - strand, within BACOVA_04209at 87.530 kb on + strand, within BACOVA_04209at 87.544 kb on + strand, within BACOVA_04209at 87.545 kb on - strand, within BACOVA_04209at 87.587 kb on + strand, within BACOVA_04209at 87.588 kb on - strand, within BACOVA_04209at 87.643 kb on + strandat 87.643 kb on + strandat 87.643 kb on + strandat 87.644 kb on - strandat 87.644 kb on - strandat 87.648 kb on + strandat 87.648 kb on + strandat 87.689 kb on + strandat 87.700 kb on + strandat 87.819 kb on + strand, within BACOVA_04210at 87.820 kb on - strand, within BACOVA_04210at 87.825 kb on + strand, within BACOVA_04210at 87.842 kb on - strand, within BACOVA_04210at 87.880 kb on + strand, within BACOVA_04210at 87.880 kb on + strand, within BACOVA_04210at 87.880 kb on + strand, within BACOVA_04210at 87.881 kb on - strand, within BACOVA_04210at 87.881 kb on - strand, within BACOVA_04210at 87.973 kb on + strand, within BACOVA_04210at 87.973 kb on + strand, within BACOVA_04210at 87.974 kb on - strand, within BACOVA_04210at 87.974 kb on - strand, within BACOVA_04210at 87.976 kb on - strand, within BACOVA_04210at 88.043 kb on - strand, within BACOVA_04210at 88.043 kb on - strand, within BACOVA_04210at 88.043 kb on - strand, within BACOVA_04210at 88.045 kb on - strand, within BACOVA_04210at 88.048 kb on - strand, within BACOVA_04210at 88.092 kb on - strand, within BACOVA_04210at 88.092 kb on - strand, within BACOVA_04210at 88.126 kb on + strand, within BACOVA_04210at 88.127 kb on - strand, within BACOVA_04210at 88.159 kb on + strand, within BACOVA_04210at 88.159 kb on + strand, within BACOVA_04210at 88.159 kb on + strand, within BACOVA_04210at 88.159 kb on + strand, within BACOVA_04210at 88.160 kb on - strand, within BACOVA_04210at 88.270 kb on + strand, within BACOVA_04210at 88.270 kb on + strand, within BACOVA_04210at 88.278 kb on + strand, within BACOVA_04210at 88.278 kb on + strand, within BACOVA_04210at 88.467 kb on + strandat 88.475 kb on + strandat 88.489 kb on + strandat 88.490 kb on - strandat 88.490 kb on - strandat 88.494 kb on + strandat 88.495 kb on - strandat 88.495 kb on - strandat 88.496 kb on + strandat 88.496 kb on + strandat 88.510 kb on - strandat 88.512 kb on - strandat 88.512 kb on - strandat 88.515 kb on - strandat 88.515 kb on - strandat 88.521 kb on - strandat 88.540 kb on + strandat 88.540 kb on + strandat 88.540 kb on + strandat 88.544 kb on - strandat 88.549 kb on - strandat 88.549 kb on - strandat 88.550 kb on + strandat 88.550 kb on + strandat 88.551 kb on - strandat 88.551 kb on - strandat 88.599 kb on - strandat 88.629 kb on - strandat 88.629 kb on - strandat 88.629 kb on - strandat 88.629 kb on - strandat 88.630 kb on + strandat 88.631 kb on - strandat 88.695 kb on + strandat 88.695 kb on + strandat 88.855 kb on - strand, within BACOVA_04211at 88.944 kb on + strand, within BACOVA_04211at 88.956 kb on + strand, within BACOVA_04211at 88.959 kb on - strand, within BACOVA_04211at 88.981 kb on - strand, within BACOVA_04211at 89.015 kb on - strand, within BACOVA_04211at 89.017 kb on + strand, within BACOVA_04211at 89.018 kb on - strand, within BACOVA_04211at 89.033 kb on + strand, within BACOVA_04211at 89.110 kb on - strand, within BACOVA_04211at 89.155 kb on - strand, within BACOVA_04211at 89.169 kb on + strand, within BACOVA_04211at 89.169 kb on + strand, within BACOVA_04211at 89.170 kb on - strand, within BACOVA_04211at 89.178 kb on - strand, within BACOVA_04211at 89.208 kb on + strand, within BACOVA_04211at 89.210 kb on + strand, within BACOVA_04211at 89.216 kb on + strand, within BACOVA_04211at 89.216 kb on + strand, within BACOVA_04211at 89.216 kb on + strand, within BACOVA_04211at 89.216 kb on + strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.217 kb on - strand, within BACOVA_04211at 89.221 kb on - strand, within BACOVA_04211at 89.221 kb on - strand, within BACOVA_04211at 89.369 kb on + strand, within BACOVA_04211

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Per-strain Table

Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C)
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86,658 - BACOVA_04208 0.40 -0.6
86,662 - BACOVA_04208 0.40 +0.2
86,666 - BACOVA_04208 0.40 -0.6
86,695 + BACOVA_04208 0.43 -1.0
86,740 - BACOVA_04208 0.46 -0.0
86,907 + BACOVA_04208 0.60 -0.8
86,907 + BACOVA_04208 0.60 +0.8
86,932 - BACOVA_04208 0.62 +0.1
86,934 + BACOVA_04208 0.62 -0.6
86,935 - BACOVA_04208 0.62 +0.2
86,969 - BACOVA_04208 0.65 +0.1
86,974 - BACOVA_04208 0.65 +1.0
86,976 + BACOVA_04208 0.65 -0.0
86,977 - BACOVA_04208 0.65 +0.8
87,031 + BACOVA_04208 0.70 +1.5
87,072 + BACOVA_04208 0.73 -0.1
87,073 - BACOVA_04208 0.73 +0.2
87,095 + BACOVA_04208 0.75 +0.1
87,095 + BACOVA_04208 0.75 +1.0
87,096 - BACOVA_04208 0.75 +0.8
87,096 - BACOVA_04208 0.75 -1.0
87,097 + BACOVA_04208 0.75 +0.4
87,098 - BACOVA_04208 0.75 +0.6
87,098 - BACOVA_04208 0.75 +1.7
87,139 - BACOVA_04208 0.79 -1.4
87,139 - BACOVA_04208 0.79 -1.1
87,165 + BACOVA_04208 0.81 +0.2
87,204 - BACOVA_04208 0.84 +0.2
87,206 + BACOVA_04208 0.84 -0.4
87,207 - BACOVA_04208 0.84 +1.4
87,207 - BACOVA_04208 0.84 +1.3
87,242 + BACOVA_04208 0.87 +0.7
87,245 - BACOVA_04208 0.87 +0.2
87,247 + BACOVA_04208 0.87 -0.0
87,248 - BACOVA_04208 0.87 +0.0
87,250 + BACOVA_04208 0.88 +0.4
87,251 - BACOVA_04208 0.88 +0.4
87,251 - BACOVA_04208 0.88 +0.5
87,251 - BACOVA_04208 0.88 -0.1
87,283 + -0.5
87,283 + +0.2
87,329 - +0.6
87,329 - +0.2
87,332 - -0.4
87,332 - -1.2
87,343 + +1.1
87,347 + -0.1
87,348 - +0.2
87,429 + BACOVA_04209 0.17 -0.9
87,455 + BACOVA_04209 0.27 -1.1
87,456 - BACOVA_04209 0.27 -0.1
87,460 - BACOVA_04209 0.29 +0.1
87,460 - BACOVA_04209 0.29 +0.5
87,507 + BACOVA_04209 0.47 -0.7
87,507 + BACOVA_04209 0.47 -0.0
87,508 - BACOVA_04209 0.47 +0.7
87,530 + BACOVA_04209 0.56 -0.4
87,544 + BACOVA_04209 0.61 -0.3
87,545 - BACOVA_04209 0.61 +0.3
87,587 + BACOVA_04209 0.77 -1.1
87,588 - BACOVA_04209 0.78 +0.3
87,643 + -0.1
87,643 + +0.5
87,643 + -0.8
87,644 - -0.0
87,644 - -0.4
87,648 + +0.2
87,648 + +0.1
87,689 + -0.2
87,700 + +0.6
87,819 + BACOVA_04210 0.22 +0.5
87,820 - BACOVA_04210 0.22 +0.2
87,825 + BACOVA_04210 0.23 +0.4
87,842 - BACOVA_04210 0.25 +1.3
87,880 + BACOVA_04210 0.30 +0.1
87,880 + BACOVA_04210 0.30 +0.7
87,880 + BACOVA_04210 0.30 -0.2
87,881 - BACOVA_04210 0.30 +0.0
87,881 - BACOVA_04210 0.30 +0.3
87,973 + BACOVA_04210 0.42 +0.6
87,973 + BACOVA_04210 0.42 +0.8
87,974 - BACOVA_04210 0.42 -0.2
87,974 - BACOVA_04210 0.42 -0.4
87,976 - BACOVA_04210 0.42 +0.5
88,043 - BACOVA_04210 0.51 +0.4
88,043 - BACOVA_04210 0.51 +0.0
88,043 - BACOVA_04210 0.51 -2.9
88,045 - BACOVA_04210 0.51 -3.4
88,048 - BACOVA_04210 0.51 +0.3
88,092 - BACOVA_04210 0.57 +0.8
88,092 - BACOVA_04210 0.57 +2.0
88,126 + BACOVA_04210 0.61 +0.7
88,127 - BACOVA_04210 0.61 +1.2
88,159 + BACOVA_04210 0.65 +0.2
88,159 + BACOVA_04210 0.65 -1.2
88,159 + BACOVA_04210 0.65 -1.0
88,159 + BACOVA_04210 0.65 +0.4
88,160 - BACOVA_04210 0.66 +1.0
88,270 + BACOVA_04210 0.80 +0.3
88,270 + BACOVA_04210 0.80 -3.4
88,278 + BACOVA_04210 0.81 -0.3
88,278 + BACOVA_04210 0.81 -0.8
88,467 + -0.9
88,475 + +0.5
88,489 + +1.3
88,490 - +0.3
88,490 - +0.3
88,494 + +1.3
88,495 - -0.2
88,495 - +0.7
88,496 + -0.7
88,496 + +0.3
88,510 - +0.6
88,512 - -1.0
88,512 - -0.4
88,515 - -0.0
88,515 - +0.6
88,521 - -0.1
88,540 + -1.2
88,540 + +0.6
88,540 + +0.4
88,544 - -1.1
88,549 - -0.6
88,549 - +1.6
88,550 + -0.0
88,550 + +0.4
88,551 - +0.2
88,551 - -1.4
88,599 - +0.5
88,629 - -0.3
88,629 - +0.8
88,629 - +1.1
88,629 - +0.3
88,630 + -0.4
88,631 - -0.0
88,695 + -1.0
88,695 + -0.3
88,855 - BACOVA_04211 0.11 +0.1
88,944 + BACOVA_04211 0.16 -0.0
88,956 + BACOVA_04211 0.17 +0.9
88,959 - BACOVA_04211 0.17 +0.5
88,981 - BACOVA_04211 0.18 -0.7
89,015 - BACOVA_04211 0.20 +0.0
89,017 + BACOVA_04211 0.20 +0.5
89,018 - BACOVA_04211 0.20 -0.5
89,033 + BACOVA_04211 0.21 +1.2
89,110 - BACOVA_04211 0.25 -1.0
89,155 - BACOVA_04211 0.27 -0.9
89,169 + BACOVA_04211 0.28 -1.0
89,169 + BACOVA_04211 0.28 +0.8
89,170 - BACOVA_04211 0.28 -0.3
89,178 - BACOVA_04211 0.29 -0.7
89,208 + BACOVA_04211 0.30 +0.6
89,210 + BACOVA_04211 0.30 +1.5
89,216 + BACOVA_04211 0.31 -0.1
89,216 + BACOVA_04211 0.31 -1.7
89,216 + BACOVA_04211 0.31 +0.2
89,216 + BACOVA_04211 0.31 -0.6
89,217 - BACOVA_04211 0.31 -0.6
89,217 - BACOVA_04211 0.31 -0.2
89,217 - BACOVA_04211 0.31 -0.7
89,217 - BACOVA_04211 0.31 -1.4
89,217 - BACOVA_04211 0.31 -0.3
89,217 - BACOVA_04211 0.31 -0.3
89,217 - BACOVA_04211 0.31 +0.6
89,217 - BACOVA_04211 0.31 -0.7
89,217 - BACOVA_04211 0.31 -0.2
89,217 - BACOVA_04211 0.31 -2.0
89,221 - BACOVA_04211 0.31 +1.0
89,221 - BACOVA_04211 0.31 +0.0
89,369 + BACOVA_04211 0.39 -0.6

Or see this region's nucleotide sequence