Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00541

Experiment: Inulin from chicory 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00540 and BACOVA_00541 are separated by 126 nucleotidesBACOVA_00541 and BACOVA_00542 are separated by 143 nucleotidesBACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675 _00540 BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903 _00541 BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547 _00542 BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080 _00543 Position (kb) 40 41Strain fitness (log2 ratio) -1 0 1 2at 39.813 kb on + strand, within BACOVA_00540at 39.855 kb on + strand, within BACOVA_00540at 39.856 kb on - strand, within BACOVA_00540at 39.913 kb on + strand, within BACOVA_00540at 39.979 kb on + strand, within BACOVA_00540at 39.979 kb on + strand, within BACOVA_00540at 39.988 kb on + strand, within BACOVA_00540at 40.242 kb on + strand, within BACOVA_00540at 40.251 kb on + strand, within BACOVA_00540at 40.251 kb on + strand, within BACOVA_00540at 40.276 kb on + strand, within BACOVA_00540at 40.300 kb on - strand, within BACOVA_00540at 40.320 kb on + strand, within BACOVA_00540at 40.320 kb on + strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.321 kb on - strand, within BACOVA_00540at 40.341 kb on + strand, within BACOVA_00540at 40.373 kb on + strand, within BACOVA_00540at 40.452 kb on + strandat 40.452 kb on + strandat 40.497 kb on + strandat 40.497 kb on + strandat 40.498 kb on - strandat 40.498 kb on - strandat 40.498 kb on - strandat 40.500 kb on - strandat 40.501 kb on + strandat 40.502 kb on - strandat 40.554 kb on + strandat 40.576 kb on + strandat 40.576 kb on + strandat 40.617 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.621 kb on + strandat 40.622 kb on - strandat 40.624 kb on + strandat 40.624 kb on + strandat 40.634 kb on + strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.661 kb on - strandat 40.664 kb on + strandat 40.678 kb on - strandat 40.777 kb on + strandat 40.778 kb on - strandat 40.960 kb on + strandat 40.964 kb on + strandat 40.970 kb on + strandat 41.158 kb on + strand, within BACOVA_00542at 41.298 kb on + strand, within BACOVA_00542at 41.387 kb on + strand, within BACOVA_00542at 41.390 kb on + strand, within BACOVA_00542at 41.514 kb on + strandat 41.514 kb on + strandat 41.566 kb on + strandat 41.789 kb on + strand, within BACOVA_00543

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Per-strain Table

Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C)
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39,813 + BACOVA_00540 0.71 +1.1
39,855 + BACOVA_00540 0.72 +0.1
39,856 - BACOVA_00540 0.73 +0.3
39,913 + BACOVA_00540 0.74 +0.2
39,979 + BACOVA_00540 0.77 +0.2
39,979 + BACOVA_00540 0.77 -0.4
39,988 + BACOVA_00540 0.77 +0.7
40,242 + BACOVA_00540 0.85 +1.1
40,251 + BACOVA_00540 0.86 +0.1
40,251 + BACOVA_00540 0.86 +0.2
40,276 + BACOVA_00540 0.87 -0.6
40,300 - BACOVA_00540 0.87 +0.3
40,320 + BACOVA_00540 0.88 +0.6
40,320 + BACOVA_00540 0.88 -1.3
40,321 - BACOVA_00540 0.88 +0.2
40,321 - BACOVA_00540 0.88 -1.3
40,321 - BACOVA_00540 0.88 +0.4
40,321 - BACOVA_00540 0.88 -0.4
40,341 + BACOVA_00540 0.89 +0.3
40,373 + BACOVA_00540 0.90 +1.0
40,452 + +0.4
40,452 + -1.3
40,497 + -1.1
40,497 + -1.0
40,498 - +0.2
40,498 - -0.6
40,498 - +0.3
40,500 - +0.1
40,501 + -0.8
40,502 - +0.0
40,554 + +0.8
40,576 + -1.2
40,576 + +0.2
40,617 + -0.2
40,621 + -0.4
40,621 + -0.6
40,621 + -0.1
40,622 - -1.0
40,624 + +2.0
40,624 + -0.3
40,634 + +0.0
40,661 - -0.5
40,661 - -0.9
40,661 - +0.1
40,664 + +0.2
40,678 - +1.5
40,777 + +0.2
40,778 - -0.3
40,960 + +0.5
40,964 + +0.1
40,970 + +0.3
41,158 + BACOVA_00542 0.22 -0.3
41,298 + BACOVA_00542 0.50 -0.5
41,387 + BACOVA_00542 0.68 -0.4
41,390 + BACOVA_00542 0.68 -0.8
41,514 + +0.6
41,514 + +0.5
41,566 + +0.9
41,789 + BACOVA_00543 0.43 +0.3

Or see this region's nucleotide sequence