Experiment: Inulin from chicory 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00539 and BACOVA_00540 are separated by 13 nucleotides BACOVA_00540 and BACOVA_00541 are separated by 126 nucleotides BACOVA_00541 and BACOVA_00542 are separated by 143 nucleotides BACOVA_00542 and BACOVA_00543 are separated by 17 nucleotides
BACOVA_00539: BACOVA_00539 - RHS repeat-associated core domain protein, at 34,609 to 37,680
_00539
BACOVA_00540: BACOVA_00540 - hypothetical protein, at 37,694 to 40,675
_00540
BACOVA_00541: BACOVA_00541 - hypothetical protein, at 40,802 to 40,903
_00541
BACOVA_00542: BACOVA_00542 - N-acetylmuramoyl-L-alanine amidase, at 41,047 to 41,547
_00542
BACOVA_00543: BACOVA_00543 - putative DNA-binding protein, at 41,565 to 42,080
_00543
Position (kb) 37
38
39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.781 kb on + strand, within BACOVA_00539 at 36.781 kb on + strand, within BACOVA_00539 at 36.781 kb on + strand, within BACOVA_00539 at 36.782 kb on - strand, within BACOVA_00539 at 36.809 kb on + strand, within BACOVA_00539 at 36.833 kb on - strand, within BACOVA_00539 at 36.866 kb on + strand, within BACOVA_00539 at 36.873 kb on - strand, within BACOVA_00539 at 36.919 kb on - strand, within BACOVA_00539 at 36.938 kb on + strand, within BACOVA_00539 at 36.943 kb on + strand, within BACOVA_00539 at 36.943 kb on + strand, within BACOVA_00539 at 36.972 kb on - strand, within BACOVA_00539 at 36.996 kb on + strand, within BACOVA_00539 at 37.001 kb on - strand, within BACOVA_00539 at 37.043 kb on + strand, within BACOVA_00539 at 37.044 kb on - strand, within BACOVA_00539 at 37.173 kb on + strand, within BACOVA_00539 at 37.184 kb on + strand, within BACOVA_00539 at 37.229 kb on + strand, within BACOVA_00539 at 37.266 kb on - strand, within BACOVA_00539 at 37.269 kb on + strand, within BACOVA_00539 at 37.347 kb on - strand, within BACOVA_00539 at 37.347 kb on - strand, within BACOVA_00539 at 37.356 kb on + strand, within BACOVA_00539 at 37.357 kb on - strand, within BACOVA_00539 at 37.403 kb on + strand at 37.403 kb on + strand at 37.409 kb on - strand at 37.409 kb on - strand at 37.409 kb on - strand at 37.428 kb on + strand at 37.431 kb on + strand at 37.493 kb on + strand at 37.502 kb on - strand at 37.546 kb on + strand at 37.547 kb on - strand at 37.551 kb on - strand at 37.556 kb on + strand at 37.556 kb on + strand at 37.557 kb on - strand at 37.560 kb on + strand at 37.561 kb on - strand at 37.561 kb on - strand at 37.654 kb on + strand at 37.655 kb on - strand at 37.656 kb on + strand at 37.661 kb on - strand at 37.667 kb on - strand at 37.733 kb on + strand at 37.746 kb on + strand at 37.776 kb on - strand at 37.794 kb on + strand at 37.795 kb on - strand at 37.848 kb on + strand at 37.849 kb on - strand at 37.852 kb on + strand at 37.852 kb on + strand at 37.852 kb on + strand at 37.853 kb on - strand at 37.854 kb on + strand at 37.854 kb on + strand at 37.855 kb on - strand at 37.889 kb on + strand at 37.889 kb on + strand at 37.954 kb on + strand at 37.955 kb on - strand at 37.978 kb on + strand at 38.017 kb on - strand, within BACOVA_00540 at 38.058 kb on + strand, within BACOVA_00540 at 38.058 kb on + strand, within BACOVA_00540 at 38.058 kb on + strand, within BACOVA_00540 at 38.059 kb on - strand, within BACOVA_00540 at 38.083 kb on - strand, within BACOVA_00540 at 38.097 kb on + strand, within BACOVA_00540 at 38.123 kb on + strand, within BACOVA_00540 at 38.142 kb on + strand, within BACOVA_00540 at 38.174 kb on + strand, within BACOVA_00540 at 38.184 kb on + strand, within BACOVA_00540 at 38.185 kb on - strand, within BACOVA_00540 at 38.185 kb on - strand, within BACOVA_00540 at 38.190 kb on + strand, within BACOVA_00540 at 38.190 kb on - strand, within BACOVA_00540 at 38.191 kb on - strand, within BACOVA_00540 at 38.239 kb on - strand, within BACOVA_00540 at 38.267 kb on + strand, within BACOVA_00540 at 38.292 kb on + strand, within BACOVA_00540 at 38.293 kb on - strand, within BACOVA_00540 at 38.294 kb on + strand, within BACOVA_00540 at 38.294 kb on + strand, within BACOVA_00540 at 38.294 kb on + strand, within BACOVA_00540 at 38.296 kb on + strand, within BACOVA_00540 at 38.296 kb on + strand, within BACOVA_00540 at 38.297 kb on - strand, within BACOVA_00540 at 38.339 kb on + strand, within BACOVA_00540 at 38.392 kb on - strand, within BACOVA_00540 at 38.410 kb on + strand, within BACOVA_00540 at 38.411 kb on - strand, within BACOVA_00540 at 38.467 kb on - strand, within BACOVA_00540 at 38.487 kb on + strand, within BACOVA_00540 at 38.488 kb on - strand, within BACOVA_00540 at 38.488 kb on - strand, within BACOVA_00540 at 38.505 kb on + strand, within BACOVA_00540 at 38.512 kb on + strand, within BACOVA_00540 at 38.513 kb on - strand, within BACOVA_00540 at 38.531 kb on - strand, within BACOVA_00540 at 38.533 kb on - strand, within BACOVA_00540 at 38.583 kb on + strand, within BACOVA_00540 at 38.593 kb on - strand, within BACOVA_00540 at 38.593 kb on - strand, within BACOVA_00540 at 38.611 kb on + strand, within BACOVA_00540 at 38.625 kb on + strand, within BACOVA_00540 at 38.749 kb on + strand, within BACOVA_00540 at 38.830 kb on + strand, within BACOVA_00540 at 38.867 kb on + strand, within BACOVA_00540 at 38.867 kb on + strand, within BACOVA_00540 at 38.868 kb on - strand, within BACOVA_00540 at 38.871 kb on - strand, within BACOVA_00540 at 38.980 kb on + strand, within BACOVA_00540 at 39.007 kb on - strand, within BACOVA_00540 at 39.017 kb on + strand, within BACOVA_00540 at 39.043 kb on + strand, within BACOVA_00540 at 39.044 kb on - strand, within BACOVA_00540 at 39.053 kb on + strand, within BACOVA_00540 at 39.072 kb on - strand, within BACOVA_00540 at 39.084 kb on - strand, within BACOVA_00540 at 39.139 kb on + strand, within BACOVA_00540 at 39.144 kb on + strand, within BACOVA_00540 at 39.172 kb on + strand, within BACOVA_00540 at 39.172 kb on + strand, within BACOVA_00540 at 39.173 kb on - strand, within BACOVA_00540 at 39.173 kb on - strand, within BACOVA_00540 at 39.231 kb on + strand, within BACOVA_00540 at 39.261 kb on + strand, within BACOVA_00540 at 39.262 kb on - strand, within BACOVA_00540 at 39.262 kb on - strand, within BACOVA_00540 at 39.289 kb on - strand, within BACOVA_00540 at 39.321 kb on + strand, within BACOVA_00540 at 39.349 kb on - strand, within BACOVA_00540 at 39.408 kb on - strand, within BACOVA_00540 at 39.499 kb on + strand, within BACOVA_00540 at 39.502 kb on - strand, within BACOVA_00540 at 39.536 kb on - strand, within BACOVA_00540 at 39.536 kb on - strand, within BACOVA_00540 at 39.577 kb on - strand, within BACOVA_00540 at 39.602 kb on - strand, within BACOVA_00540 at 39.631 kb on - strand, within BACOVA_00540 at 39.665 kb on + strand, within BACOVA_00540 at 39.688 kb on + strand, within BACOVA_00540 at 39.689 kb on - strand, within BACOVA_00540 at 39.710 kb on + strand, within BACOVA_00540 at 39.712 kb on + strand, within BACOVA_00540 at 39.793 kb on + strand, within BACOVA_00540 at 39.794 kb on - strand, within BACOVA_00540 at 39.813 kb on + strand, within BACOVA_00540 at 39.855 kb on + strand, within BACOVA_00540 at 39.856 kb on - strand, within BACOVA_00540 at 39.913 kb on + strand, within BACOVA_00540 at 39.979 kb on + strand, within BACOVA_00540 at 39.979 kb on + strand, within BACOVA_00540 at 39.988 kb on + strand, within BACOVA_00540 at 40.242 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.251 kb on + strand, within BACOVA_00540 at 40.276 kb on + strand, within BACOVA_00540 at 40.300 kb on - strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.320 kb on + strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.321 kb on - strand, within BACOVA_00540 at 40.341 kb on + strand, within BACOVA_00540 at 40.373 kb on + strand, within BACOVA_00540 at 40.452 kb on + strand at 40.452 kb on + strand at 40.497 kb on + strand at 40.497 kb on + strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.498 kb on - strand at 40.500 kb on - strand at 40.501 kb on + strand at 40.502 kb on - strand at 40.554 kb on + strand at 40.576 kb on + strand at 40.576 kb on + strand at 40.617 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.621 kb on + strand at 40.622 kb on - strand at 40.624 kb on + strand at 40.624 kb on + strand at 40.634 kb on + strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.661 kb on - strand at 40.664 kb on + strand at 40.678 kb on - strand at 40.777 kb on + strand at 40.778 kb on - strand at 40.960 kb on + strand at 40.964 kb on + strand at 40.970 kb on + strand at 41.158 kb on + strand, within BACOVA_00542 at 41.298 kb on + strand, within BACOVA_00542 at 41.387 kb on + strand, within BACOVA_00542 at 41.390 kb on + strand, within BACOVA_00542 at 41.514 kb on + strand at 41.514 kb on + strand at 41.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C) remove 36,781 + BACOVA_00539 0.71 -0.2 36,781 + BACOVA_00539 0.71 -0.4 36,781 + BACOVA_00539 0.71 -2.0 36,782 - BACOVA_00539 0.71 +0.2 36,809 + BACOVA_00539 0.72 -0.8 36,833 - BACOVA_00539 0.72 -0.2 36,866 + BACOVA_00539 0.73 +1.0 36,873 - BACOVA_00539 0.74 +0.5 36,919 - BACOVA_00539 0.75 -0.8 36,938 + BACOVA_00539 0.76 -1.0 36,943 + BACOVA_00539 0.76 +0.1 36,943 + BACOVA_00539 0.76 +0.1 36,972 - BACOVA_00539 0.77 -0.5 36,996 + BACOVA_00539 0.78 -0.7 37,001 - BACOVA_00539 0.78 -0.3 37,043 + BACOVA_00539 0.79 +0.6 37,044 - BACOVA_00539 0.79 +0.0 37,173 + BACOVA_00539 0.83 +0.2 37,184 + BACOVA_00539 0.84 -0.3 37,229 + BACOVA_00539 0.85 +1.3 37,266 - BACOVA_00539 0.86 -0.2 37,269 + BACOVA_00539 0.87 +1.2 37,347 - BACOVA_00539 0.89 +0.3 37,347 - BACOVA_00539 0.89 -0.2 37,356 + BACOVA_00539 0.89 +1.3 37,357 - BACOVA_00539 0.89 -0.9 37,403 + +0.5 37,403 + +0.3 37,409 - -0.2 37,409 - +0.3 37,409 - +0.5 37,428 + +1.0 37,431 + +0.3 37,493 + -0.8 37,502 - +0.2 37,546 + +0.3 37,547 - +1.2 37,551 - +1.0 37,556 + +0.3 37,556 + -0.2 37,557 - +0.3 37,560 + -1.7 37,561 - +1.0 37,561 - +0.1 37,654 + +2.0 37,655 - -1.0 37,656 + +0.8 37,661 - -1.3 37,667 - -0.7 37,733 + +0.6 37,746 + -0.3 37,776 - +0.7 37,794 + +0.6 37,795 - -1.1 37,848 + +0.3 37,849 - -0.1 37,852 + -0.3 37,852 + -0.0 37,852 + +0.1 37,853 - +0.7 37,854 + +0.7 37,854 + +0.0 37,855 - -0.4 37,889 + -0.1 37,889 + +0.8 37,954 + +0.8 37,955 - -1.3 37,978 + +0.8 38,017 - BACOVA_00540 0.11 -0.2 38,058 + BACOVA_00540 0.12 +0.7 38,058 + BACOVA_00540 0.12 -1.1 38,058 + BACOVA_00540 0.12 +0.7 38,059 - BACOVA_00540 0.12 +0.1 38,083 - BACOVA_00540 0.13 +0.2 38,097 + BACOVA_00540 0.14 +1.3 38,123 + BACOVA_00540 0.14 -0.2 38,142 + BACOVA_00540 0.15 -0.5 38,174 + BACOVA_00540 0.16 +0.0 38,184 + BACOVA_00540 0.16 +0.2 38,185 - BACOVA_00540 0.16 -0.8 38,185 - BACOVA_00540 0.16 +0.3 38,190 + BACOVA_00540 0.17 -0.4 38,190 - BACOVA_00540 0.17 -0.2 38,191 - BACOVA_00540 0.17 +0.2 38,239 - BACOVA_00540 0.18 -0.1 38,267 + BACOVA_00540 0.19 +0.2 38,292 + BACOVA_00540 0.20 -0.3 38,293 - BACOVA_00540 0.20 -0.4 38,294 + BACOVA_00540 0.20 -0.1 38,294 + BACOVA_00540 0.20 -1.2 38,294 + BACOVA_00540 0.20 +0.5 38,296 + BACOVA_00540 0.20 -0.4 38,296 + BACOVA_00540 0.20 +0.2 38,297 - BACOVA_00540 0.20 -0.5 38,339 + BACOVA_00540 0.22 -0.9 38,392 - BACOVA_00540 0.23 -0.8 38,410 + BACOVA_00540 0.24 -0.0 38,411 - BACOVA_00540 0.24 -0.8 38,467 - BACOVA_00540 0.26 +1.3 38,487 + BACOVA_00540 0.27 +0.2 38,488 - BACOVA_00540 0.27 +1.3 38,488 - BACOVA_00540 0.27 +1.4 38,505 + BACOVA_00540 0.27 -0.2 38,512 + BACOVA_00540 0.27 -0.4 38,513 - BACOVA_00540 0.27 +0.5 38,531 - BACOVA_00540 0.28 -0.3 38,533 - BACOVA_00540 0.28 -1.9 38,583 + BACOVA_00540 0.30 +0.1 38,593 - BACOVA_00540 0.30 -0.7 38,593 - BACOVA_00540 0.30 +0.3 38,611 + BACOVA_00540 0.31 -0.6 38,625 + BACOVA_00540 0.31 -0.4 38,749 + BACOVA_00540 0.35 -0.5 38,830 + BACOVA_00540 0.38 -1.9 38,867 + BACOVA_00540 0.39 -0.5 38,867 + BACOVA_00540 0.39 -0.8 38,868 - BACOVA_00540 0.39 -0.6 38,871 - BACOVA_00540 0.39 +0.2 38,980 + BACOVA_00540 0.43 -0.6 39,007 - BACOVA_00540 0.44 +0.2 39,017 + BACOVA_00540 0.44 +0.0 39,043 + BACOVA_00540 0.45 -1.7 39,044 - BACOVA_00540 0.45 +1.1 39,053 + BACOVA_00540 0.46 -0.4 39,072 - BACOVA_00540 0.46 +0.6 39,084 - BACOVA_00540 0.47 +0.8 39,139 + BACOVA_00540 0.48 +0.2 39,144 + BACOVA_00540 0.49 -0.1 39,172 + BACOVA_00540 0.50 +0.4 39,172 + BACOVA_00540 0.50 -0.3 39,173 - BACOVA_00540 0.50 +1.0 39,173 - BACOVA_00540 0.50 +0.0 39,231 + BACOVA_00540 0.52 +1.2 39,261 + BACOVA_00540 0.53 -0.2 39,262 - BACOVA_00540 0.53 -0.9 39,262 - BACOVA_00540 0.53 +0.6 39,289 - BACOVA_00540 0.53 +0.0 39,321 + BACOVA_00540 0.55 -0.2 39,349 - BACOVA_00540 0.55 +1.6 39,408 - BACOVA_00540 0.57 -0.4 39,499 + BACOVA_00540 0.61 -0.9 39,502 - BACOVA_00540 0.61 -1.4 39,536 - BACOVA_00540 0.62 +0.4 39,536 - BACOVA_00540 0.62 +0.6 39,577 - BACOVA_00540 0.63 -0.6 39,602 - BACOVA_00540 0.64 -0.4 39,631 - BACOVA_00540 0.65 -0.4 39,665 + BACOVA_00540 0.66 -0.0 39,688 + BACOVA_00540 0.67 -1.4 39,689 - BACOVA_00540 0.67 -0.6 39,710 + BACOVA_00540 0.68 -0.0 39,712 + BACOVA_00540 0.68 +1.2 39,793 + BACOVA_00540 0.70 -0.1 39,794 - BACOVA_00540 0.70 -0.8 39,813 + BACOVA_00540 0.71 +1.1 39,855 + BACOVA_00540 0.72 +0.1 39,856 - BACOVA_00540 0.73 +0.3 39,913 + BACOVA_00540 0.74 +0.2 39,979 + BACOVA_00540 0.77 +0.2 39,979 + BACOVA_00540 0.77 -0.4 39,988 + BACOVA_00540 0.77 +0.7 40,242 + BACOVA_00540 0.85 +1.1 40,251 + BACOVA_00540 0.86 +0.1 40,251 + BACOVA_00540 0.86 +0.2 40,276 + BACOVA_00540 0.87 -0.6 40,300 - BACOVA_00540 0.87 +0.3 40,320 + BACOVA_00540 0.88 +0.6 40,320 + BACOVA_00540 0.88 -1.3 40,321 - BACOVA_00540 0.88 +0.2 40,321 - BACOVA_00540 0.88 -1.3 40,321 - BACOVA_00540 0.88 +0.4 40,321 - BACOVA_00540 0.88 -0.4 40,341 + BACOVA_00540 0.89 +0.3 40,373 + BACOVA_00540 0.90 +1.0 40,452 + +0.4 40,452 + -1.3 40,497 + -1.1 40,497 + -1.0 40,498 - +0.2 40,498 - -0.6 40,498 - +0.3 40,500 - +0.1 40,501 + -0.8 40,502 - +0.0 40,554 + +0.8 40,576 + -1.2 40,576 + +0.2 40,617 + -0.2 40,621 + -0.4 40,621 + -0.6 40,621 + -0.1 40,622 - -1.0 40,624 + +2.0 40,624 + -0.3 40,634 + +0.0 40,661 - -0.5 40,661 - -0.9 40,661 - +0.1 40,664 + +0.2 40,678 - +1.5 40,777 + +0.2 40,778 - -0.3 40,960 + +0.5 40,964 + +0.1 40,970 + +0.3 41,158 + BACOVA_00542 0.22 -0.3 41,298 + BACOVA_00542 0.50 -0.5 41,387 + BACOVA_00542 0.68 -0.4 41,390 + BACOVA_00542 0.68 -0.8 41,514 + +0.6 41,514 + +0.5 41,566 + +0.9
Or see this region's nucleotide sequence