Strain Fitness in Erwinia amylovora T8 around OLJFJH_17340

Experiment: FE-KB2-T2 (Control KB Rep 2 Time 2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17325 and OLJFJH_17330 are separated by 191 nucleotidesOLJFJH_17330 and OLJFJH_17335 are separated by 138 nucleotidesOLJFJH_17335 and OLJFJH_17340 overlap by 1 nucleotidesOLJFJH_17340 and OLJFJH_17345 overlap by 4 nucleotides OLJFJH_17325: OLJFJH_17325 - cytochrome d ubiquinol oxidase subunit II, at 3,656,321 to 3,657,328 _17325 OLJFJH_17330: OLJFJH_17330 - CsbD family protein, at 3,657,520 to 3,657,774 _17330 OLJFJH_17335: OLJFJH_17335 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 3,657,913 to 3,658,296 _17335 OLJFJH_17340: OLJFJH_17340 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 3,658,296 to 3,658,622 _17340 OLJFJH_17345: OLJFJH_17345 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 3,658,619 to 3,660,280 _17345 Position (kb) 3658 3659Strain fitness (log2 ratio) -2 -1 0 1at 3657.329 kb on + strandat 3657.329 kb on + strandat 3657.471 kb on + strandat 3657.472 kb on - strandat 3657.547 kb on - strand, within OLJFJH_17330at 3657.629 kb on + strand, within OLJFJH_17330at 3657.629 kb on + strand, within OLJFJH_17330at 3657.655 kb on + strand, within OLJFJH_17330at 3657.656 kb on - strand, within OLJFJH_17330at 3657.656 kb on - strand, within OLJFJH_17330at 3657.753 kb on + strandat 3657.753 kb on + strandat 3657.754 kb on - strandat 3657.754 kb on - strandat 3657.891 kb on - strandat 3657.891 kb on - strandat 3657.896 kb on + strandat 3658.170 kb on + strand, within OLJFJH_17335at 3658.171 kb on - strand, within OLJFJH_17335at 3658.304 kb on - strandat 3658.422 kb on + strand, within OLJFJH_17340at 3658.527 kb on - strand, within OLJFJH_17340at 3658.569 kb on + strand, within OLJFJH_17340at 3658.635 kb on + strandat 3658.635 kb on + strandat 3658.635 kb on + strandat 3658.635 kb on + strandat 3658.639 kb on - strandat 3658.665 kb on + strandat 3658.827 kb on + strand, within OLJFJH_17345at 3658.827 kb on + strand, within OLJFJH_17345at 3658.931 kb on - strand, within OLJFJH_17345at 3658.931 kb on - strand, within OLJFJH_17345at 3658.938 kb on - strand, within OLJFJH_17345at 3659.058 kb on + strand, within OLJFJH_17345at 3659.154 kb on + strand, within OLJFJH_17345at 3659.154 kb on + strand, within OLJFJH_17345at 3659.195 kb on + strand, within OLJFJH_17345at 3659.217 kb on - strand, within OLJFJH_17345at 3659.225 kb on + strand, within OLJFJH_17345at 3659.233 kb on + strand, within OLJFJH_17345at 3659.234 kb on - strand, within OLJFJH_17345at 3659.332 kb on + strand, within OLJFJH_17345at 3659.332 kb on + strand, within OLJFJH_17345at 3659.333 kb on - strand, within OLJFJH_17345at 3659.334 kb on + strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.401 kb on - strand, within OLJFJH_17345at 3659.502 kb on + strand, within OLJFJH_17345at 3659.503 kb on - strand, within OLJFJH_17345at 3659.503 kb on - strand, within OLJFJH_17345at 3659.522 kb on - strand, within OLJFJH_17345at 3659.574 kb on + strand, within OLJFJH_17345at 3659.575 kb on - strand, within OLJFJH_17345

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T2 (Control KB Rep 2 Time 2)
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3,657,329 + -1.0
3,657,329 + -0.7
3,657,471 + -0.0
3,657,472 - +0.6
3,657,547 - OLJFJH_17330 0.11 +0.6
3,657,629 + OLJFJH_17330 0.43 -0.2
3,657,629 + OLJFJH_17330 0.43 +0.1
3,657,655 + OLJFJH_17330 0.53 +0.3
3,657,656 - OLJFJH_17330 0.53 -0.8
3,657,656 - OLJFJH_17330 0.53 -0.3
3,657,753 + +0.4
3,657,753 + -0.4
3,657,754 - -1.2
3,657,754 - -0.0
3,657,891 - +0.5
3,657,891 - +0.5
3,657,896 + -1.3
3,658,170 + OLJFJH_17335 0.67 -0.3
3,658,171 - OLJFJH_17335 0.67 +0.0
3,658,304 - +0.3
3,658,422 + OLJFJH_17340 0.39 -1.4
3,658,527 - OLJFJH_17340 0.71 +0.3
3,658,569 + OLJFJH_17340 0.83 -1.8
3,658,635 + -0.1
3,658,635 + +0.1
3,658,635 + -0.3
3,658,635 + +0.2
3,658,639 - -0.1
3,658,665 + -1.0
3,658,827 + OLJFJH_17345 0.13 +0.1
3,658,827 + OLJFJH_17345 0.13 -0.4
3,658,931 - OLJFJH_17345 0.19 +0.1
3,658,931 - OLJFJH_17345 0.19 -0.1
3,658,938 - OLJFJH_17345 0.19 -0.0
3,659,058 + OLJFJH_17345 0.26 +0.1
3,659,154 + OLJFJH_17345 0.32 -0.5
3,659,154 + OLJFJH_17345 0.32 -0.8
3,659,195 + OLJFJH_17345 0.35 -0.7
3,659,217 - OLJFJH_17345 0.36 -0.4
3,659,225 + OLJFJH_17345 0.36 -0.1
3,659,233 + OLJFJH_17345 0.37 -0.5
3,659,234 - OLJFJH_17345 0.37 +0.1
3,659,332 + OLJFJH_17345 0.43 -0.4
3,659,332 + OLJFJH_17345 0.43 -0.0
3,659,333 - OLJFJH_17345 0.43 +0.1
3,659,334 + OLJFJH_17345 0.43 +0.4
3,659,335 - OLJFJH_17345 0.43 -0.2
3,659,335 - OLJFJH_17345 0.43 -0.5
3,659,335 - OLJFJH_17345 0.43 -0.1
3,659,335 - OLJFJH_17345 0.43 +1.1
3,659,335 - OLJFJH_17345 0.43 -0.0
3,659,335 - OLJFJH_17345 0.43 +0.1
3,659,401 - OLJFJH_17345 0.47 -0.0
3,659,502 + OLJFJH_17345 0.53 -0.3
3,659,503 - OLJFJH_17345 0.53 +0.2
3,659,503 - OLJFJH_17345 0.53 +0.3
3,659,522 - OLJFJH_17345 0.54 -0.1
3,659,574 + OLJFJH_17345 0.57 -0.5
3,659,575 - OLJFJH_17345 0.58 -0.5

Or see this region's nucleotide sequence