Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10245

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_10240 and xseB are separated by 75 nucleotidesxseB and ispA are separated by 22 nucleotidesispA and tic20a are separated by 63 nucleotides OKGIIK_10240: OKGIIK_10240 - tRNA(Ile)-lysidine synthase, at 2,209,865 to 2,211,166 _10240 OKGIIK_10245: xseB - exodeoxyribonuclease VII small subunit, at 2,211,242 to 2,211,499 xseB OKGIIK_10250: ispA - geranyl transferase, at 2,211,522 to 2,212,382 ispA OKGIIK_10255: tic20a - DUF4870 domain-containing protein, at 2,212,446 to 2,212,847 tic20a Position (kb) 2211 2212Strain fitness (log2 ratio) -2 -1 0 1 2at 2211.651 kb on + strand, within ispAat 2212.474 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.480 kb on + strandat 2212.481 kb on - strandat 2212.481 kb on - strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.484 kb on + strandat 2212.485 kb on - strandat 2212.485 kb on - strandat 2212.485 kb on - strandat 2212.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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2,211,651 + ispA OKGIIK_10250 0.15 -0.6
2,212,474 + -1.0
2,212,480 + -0.9
2,212,480 + -0.1
2,212,480 + -1.4
2,212,480 + +2.0
2,212,480 + +0.4
2,212,480 + +0.4
2,212,480 + +0.6
2,212,480 + +1.0
2,212,480 + -1.1
2,212,480 + -0.7
2,212,480 + +0.6
2,212,480 + -0.4
2,212,480 + -1.8
2,212,480 + +1.4
2,212,480 + +0.9
2,212,480 + -2.5
2,212,480 + -1.0
2,212,480 + +0.0
2,212,480 + -1.3
2,212,480 + +0.2
2,212,480 + -0.2
2,212,481 - -1.1
2,212,481 - -0.1
2,212,484 + -1.7
2,212,484 + -0.8
2,212,484 + -0.9
2,212,484 + +0.0
2,212,484 + -0.1
2,212,484 + -2.1
2,212,484 + -2.0
2,212,484 + -1.2
2,212,484 + +1.7
2,212,484 + -0.9
2,212,484 + -1.3
2,212,484 + +0.2
2,212,484 + +0.7
2,212,484 + +0.6
2,212,485 - +0.3
2,212,485 - -1.0
2,212,485 - -0.2
2,212,485 - -0.1

Or see this region's nucleotide sequence