Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_08685 and OKGIIK_08690 overlap by 4 nucleotides OKGIIK_08690 and OKGIIK_08695 overlap by 4 nucleotides
OKGIIK_08685: OKGIIK_08685 - hypothetical protein, at 1,892,638 to 1,895,454
_08685
OKGIIK_08690: OKGIIK_08690 - hypothetical protein, at 1,895,451 to 1,896,194
_08690
OKGIIK_08695: OKGIIK_08695 - hypothetical protein, at 1,896,191 to 1,897,276
_08695
Position (kb)
1895
1896
1897 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1894.463 kb on + strand, within OKGIIK_08685 at 1894.464 kb on - strand, within OKGIIK_08685 at 1894.920 kb on - strand, within OKGIIK_08685 at 1894.920 kb on - strand, within OKGIIK_08685 at 1894.920 kb on - strand, within OKGIIK_08685 at 1894.925 kb on + strand, within OKGIIK_08685 at 1894.925 kb on + strand, within OKGIIK_08685 at 1894.925 kb on + strand, within OKGIIK_08685 at 1894.926 kb on - strand, within OKGIIK_08685 at 1894.926 kb on - strand, within OKGIIK_08685 at 1894.926 kb on - strand, within OKGIIK_08685 at 1894.926 kb on - strand, within OKGIIK_08685 at 1894.926 kb on - strand, within OKGIIK_08685 at 1894.926 kb on - strand, within OKGIIK_08685 at 1895.049 kb on - strand, within OKGIIK_08685 at 1895.063 kb on + strand, within OKGIIK_08685 at 1895.063 kb on + strand, within OKGIIK_08685 at 1895.063 kb on + strand, within OKGIIK_08685 at 1895.063 kb on + strand, within OKGIIK_08685 at 1895.064 kb on - strand, within OKGIIK_08685 at 1895.064 kb on - strand, within OKGIIK_08685 at 1895.064 kb on - strand, within OKGIIK_08685 at 1895.064 kb on - strand, within OKGIIK_08685 at 1895.064 kb on - strand, within OKGIIK_08685 at 1895.282 kb on + strand at 1895.282 kb on + strand at 1895.283 kb on - strand at 1895.423 kb on + strand at 1895.423 kb on + strand at 1895.423 kb on + strand at 1895.423 kb on + strand at 1895.424 kb on - strand at 1895.424 kb on - strand at 1895.424 kb on - strand at 1895.424 kb on - strand at 1895.424 kb on - strand at 1895.424 kb on - strand at 1895.424 kb on - strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.454 kb on + strand at 1895.455 kb on - strand at 1895.455 kb on - strand at 1895.455 kb on - strand at 1895.455 kb on - strand at 1895.455 kb on - strand at 1895.455 kb on - strand at 1895.461 kb on + strand at 1895.462 kb on - strand at 1895.462 kb on - strand at 1895.462 kb on - strand at 1895.483 kb on - strand at 1895.639 kb on - strand, within OKGIIK_08690 at 1895.639 kb on - strand, within OKGIIK_08690 at 1895.639 kb on - strand, within OKGIIK_08690 at 1895.653 kb on + strand, within OKGIIK_08690 at 1895.653 kb on + strand, within OKGIIK_08690 at 1895.653 kb on + strand, within OKGIIK_08690 at 1895.653 kb on + strand, within OKGIIK_08690 at 1895.654 kb on - strand, within OKGIIK_08690 at 1895.732 kb on + strand, within OKGIIK_08690 at 1895.732 kb on + strand, within OKGIIK_08690 at 1895.732 kb on + strand, within OKGIIK_08690 at 1895.732 kb on + strand, within OKGIIK_08690 at 1895.732 kb on + strand, within OKGIIK_08690 at 1895.732 kb on + strand, within OKGIIK_08690 at 1895.733 kb on - strand, within OKGIIK_08690 at 1895.733 kb on - strand, within OKGIIK_08690 at 1895.733 kb on - strand, within OKGIIK_08690 at 1895.737 kb on + strand, within OKGIIK_08690 at 1895.738 kb on - strand, within OKGIIK_08690 at 1895.785 kb on + strand, within OKGIIK_08690 at 1895.785 kb on + strand, within OKGIIK_08690 at 1895.785 kb on + strand, within OKGIIK_08690 at 1895.785 kb on + strand, within OKGIIK_08690 at 1895.785 kb on + strand, within OKGIIK_08690 at 1895.785 kb on + strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.786 kb on - strand, within OKGIIK_08690 at 1895.827 kb on + strand, within OKGIIK_08690 at 1895.866 kb on + strand, within OKGIIK_08690 at 1895.866 kb on + strand, within OKGIIK_08690 at 1895.866 kb on + strand, within OKGIIK_08690 at 1895.867 kb on - strand, within OKGIIK_08690 at 1895.867 kb on - strand, within OKGIIK_08690 at 1895.867 kb on - strand, within OKGIIK_08690 at 1895.867 kb on - strand, within OKGIIK_08690 at 1896.095 kb on - strand, within OKGIIK_08690 at 1896.095 kb on - strand, within OKGIIK_08690 at 1896.095 kb on - strand, within OKGIIK_08690 at 1896.112 kb on + strand, within OKGIIK_08690 at 1896.112 kb on + strand, within OKGIIK_08690 at 1896.113 kb on - strand, within OKGIIK_08690 at 1896.225 kb on + strand at 1896.225 kb on + strand at 1896.225 kb on + strand at 1896.225 kb on + strand at 1896.225 kb on + strand at 1896.226 kb on - strand at 1896.226 kb on - strand at 1896.226 kb on - strand at 1896.226 kb on - strand at 1896.231 kb on + strand at 1896.231 kb on + strand at 1896.231 kb on + strand at 1896.231 kb on + strand at 1896.231 kb on + strand at 1896.231 kb on + strand at 1896.231 kb on + strand at 1896.232 kb on - strand at 1896.232 kb on - strand at 1896.232 kb on - strand at 1896.232 kb on - strand at 1896.232 kb on - strand at 1896.261 kb on + strand at 1896.261 kb on + strand at 1896.262 kb on - strand at 1896.262 kb on - strand at 1896.324 kb on + strand, within OKGIIK_08695 at 1896.324 kb on + strand, within OKGIIK_08695 at 1896.324 kb on + strand, within OKGIIK_08695 at 1896.324 kb on + strand, within OKGIIK_08695 at 1896.324 kb on + strand, within OKGIIK_08695 at 1896.325 kb on - strand, within OKGIIK_08695 at 1896.325 kb on - strand, within OKGIIK_08695 at 1896.348 kb on + strand, within OKGIIK_08695 at 1896.399 kb on - strand, within OKGIIK_08695 at 1896.561 kb on + strand, within OKGIIK_08695 at 1896.561 kb on + strand, within OKGIIK_08695 at 1896.561 kb on + strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.562 kb on - strand, within OKGIIK_08695 at 1896.671 kb on - strand, within OKGIIK_08695 at 1896.671 kb on - strand, within OKGIIK_08695 at 1896.720 kb on + strand, within OKGIIK_08695 at 1896.720 kb on + strand, within OKGIIK_08695 at 1896.721 kb on - strand, within OKGIIK_08695 at 1896.721 kb on - strand, within OKGIIK_08695 at 1896.721 kb on - strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.777 kb on + strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.778 kb on - strand, within OKGIIK_08695 at 1896.787 kb on - strand, within OKGIIK_08695 at 1896.818 kb on + strand, within OKGIIK_08695 at 1896.819 kb on - strand, within OKGIIK_08695 at 1896.819 kb on - strand, within OKGIIK_08695 at 1896.841 kb on + strand, within OKGIIK_08695 at 1896.928 kb on - strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.933 kb on + strand, within OKGIIK_08695 at 1896.934 kb on - strand, within OKGIIK_08695 at 1896.934 kb on - strand, within OKGIIK_08695 at 1896.934 kb on - strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.032 kb on + strand, within OKGIIK_08695 at 1897.033 kb on - strand, within OKGIIK_08695 at 1897.033 kb on - strand, within OKGIIK_08695 at 1897.033 kb on - strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.065 kb on + strand, within OKGIIK_08695 at 1897.092 kb on + strand, within OKGIIK_08695 at 1897.101 kb on + strand, within OKGIIK_08695 at 1897.102 kb on - strand, within OKGIIK_08695
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 1,894,463 + OKGIIK_08685 0.65 +0.0 1,894,464 - OKGIIK_08685 0.65 +0.2 1,894,920 - OKGIIK_08685 0.81 +0.0 1,894,920 - OKGIIK_08685 0.81 -0.4 1,894,920 - OKGIIK_08685 0.81 -0.0 1,894,925 + OKGIIK_08685 0.81 -0.6 1,894,925 + OKGIIK_08685 0.81 -1.5 1,894,925 + OKGIIK_08685 0.81 +0.8 1,894,926 - OKGIIK_08685 0.81 +0.4 1,894,926 - OKGIIK_08685 0.81 +1.0 1,894,926 - OKGIIK_08685 0.81 +1.5 1,894,926 - OKGIIK_08685 0.81 -0.0 1,894,926 - OKGIIK_08685 0.81 +1.0 1,894,926 - OKGIIK_08685 0.81 -0.0 1,895,049 - OKGIIK_08685 0.86 +0.4 1,895,063 + OKGIIK_08685 0.86 +1.0 1,895,063 + OKGIIK_08685 0.86 -1.6 1,895,063 + OKGIIK_08685 0.86 +0.5 1,895,063 + OKGIIK_08685 0.86 -0.0 1,895,064 - OKGIIK_08685 0.86 -0.9 1,895,064 - OKGIIK_08685 0.86 -0.6 1,895,064 - OKGIIK_08685 0.86 +0.5 1,895,064 - OKGIIK_08685 0.86 +0.6 1,895,064 - OKGIIK_08685 0.86 +0.1 1,895,282 + -0.4 1,895,282 + +0.6 1,895,283 - -0.5 1,895,423 + -2.6 1,895,423 + -2.3 1,895,423 + -0.5 1,895,423 + -1.0 1,895,424 - +0.5 1,895,424 - -0.9 1,895,424 - +0.4 1,895,424 - -1.7 1,895,424 - +0.5 1,895,424 - -0.2 1,895,424 - +1.6 1,895,454 + +2.3 1,895,454 + -0.4 1,895,454 + -0.2 1,895,454 + +0.2 1,895,454 + +0.5 1,895,454 + +0.9 1,895,454 + -1.2 1,895,454 + -0.6 1,895,454 + -0.4 1,895,454 + -2.9 1,895,455 - +0.1 1,895,455 - -2.2 1,895,455 - +0.7 1,895,455 - -1.0 1,895,455 - -0.5 1,895,455 - -0.0 1,895,461 + -1.0 1,895,462 - -0.6 1,895,462 - -0.5 1,895,462 - +0.4 1,895,483 - +0.5 1,895,639 - OKGIIK_08690 0.25 -0.4 1,895,639 - OKGIIK_08690 0.25 -0.0 1,895,639 - OKGIIK_08690 0.25 +1.4 1,895,653 + OKGIIK_08690 0.27 +0.1 1,895,653 + OKGIIK_08690 0.27 -0.5 1,895,653 + OKGIIK_08690 0.27 +0.2 1,895,653 + OKGIIK_08690 0.27 -0.2 1,895,654 - OKGIIK_08690 0.27 -0.9 1,895,732 + OKGIIK_08690 0.38 +0.2 1,895,732 + OKGIIK_08690 0.38 -0.2 1,895,732 + OKGIIK_08690 0.38 -0.4 1,895,732 + OKGIIK_08690 0.38 -1.0 1,895,732 + OKGIIK_08690 0.38 -0.2 1,895,732 + OKGIIK_08690 0.38 -1.0 1,895,733 - OKGIIK_08690 0.38 +0.1 1,895,733 - OKGIIK_08690 0.38 +1.4 1,895,733 - OKGIIK_08690 0.38 -0.3 1,895,737 + OKGIIK_08690 0.38 +0.1 1,895,738 - OKGIIK_08690 0.39 -0.9 1,895,785 + OKGIIK_08690 0.45 -0.4 1,895,785 + OKGIIK_08690 0.45 -0.9 1,895,785 + OKGIIK_08690 0.45 +1.4 1,895,785 + OKGIIK_08690 0.45 -0.4 1,895,785 + OKGIIK_08690 0.45 -1.5 1,895,785 + OKGIIK_08690 0.45 +0.3 1,895,786 - OKGIIK_08690 0.45 -1.5 1,895,786 - OKGIIK_08690 0.45 -0.4 1,895,786 - OKGIIK_08690 0.45 -1.0 1,895,786 - OKGIIK_08690 0.45 -1.8 1,895,786 - OKGIIK_08690 0.45 +1.0 1,895,786 - OKGIIK_08690 0.45 +1.1 1,895,786 - OKGIIK_08690 0.45 -0.3 1,895,786 - OKGIIK_08690 0.45 -1.5 1,895,786 - OKGIIK_08690 0.45 -1.9 1,895,786 - OKGIIK_08690 0.45 -0.2 1,895,786 - OKGIIK_08690 0.45 -0.4 1,895,827 + OKGIIK_08690 0.51 -1.9 1,895,866 + OKGIIK_08690 0.56 +1.1 1,895,866 + OKGIIK_08690 0.56 -0.6 1,895,866 + OKGIIK_08690 0.56 +2.2 1,895,867 - OKGIIK_08690 0.56 -0.5 1,895,867 - OKGIIK_08690 0.56 -1.4 1,895,867 - OKGIIK_08690 0.56 -0.9 1,895,867 - OKGIIK_08690 0.56 -0.6 1,896,095 - OKGIIK_08690 0.87 -0.7 1,896,095 - OKGIIK_08690 0.87 -2.6 1,896,095 - OKGIIK_08690 0.87 -0.6 1,896,112 + OKGIIK_08690 0.89 +1.4 1,896,112 + OKGIIK_08690 0.89 -0.7 1,896,113 - OKGIIK_08690 0.89 -0.0 1,896,225 + -0.9 1,896,225 + +1.0 1,896,225 + +0.8 1,896,225 + +1.1 1,896,225 + -1.2 1,896,226 - -0.2 1,896,226 - -0.9 1,896,226 - -0.4 1,896,226 - -0.2 1,896,231 + -0.6 1,896,231 + -0.6 1,896,231 + +0.5 1,896,231 + -0.0 1,896,231 + +0.2 1,896,231 + +1.0 1,896,231 + +1.1 1,896,232 - -0.5 1,896,232 - +1.5 1,896,232 - +1.0 1,896,232 - +0.5 1,896,232 - -0.9 1,896,261 + -0.4 1,896,261 + -0.9 1,896,262 - -0.7 1,896,262 - +0.6 1,896,324 + OKGIIK_08695 0.12 -1.4 1,896,324 + OKGIIK_08695 0.12 -1.0 1,896,324 + OKGIIK_08695 0.12 +0.4 1,896,324 + OKGIIK_08695 0.12 +0.6 1,896,324 + OKGIIK_08695 0.12 -2.3 1,896,325 - OKGIIK_08695 0.12 +1.4 1,896,325 - OKGIIK_08695 0.12 -0.4 1,896,348 + OKGIIK_08695 0.14 -0.4 1,896,399 - OKGIIK_08695 0.19 -0.9 1,896,561 + OKGIIK_08695 0.34 -1.2 1,896,561 + OKGIIK_08695 0.34 +2.0 1,896,561 + OKGIIK_08695 0.34 -1.5 1,896,562 - OKGIIK_08695 0.34 +0.5 1,896,562 - OKGIIK_08695 0.34 -0.4 1,896,562 - OKGIIK_08695 0.34 +0.2 1,896,562 - OKGIIK_08695 0.34 -0.4 1,896,562 - OKGIIK_08695 0.34 -0.4 1,896,562 - OKGIIK_08695 0.34 -0.6 1,896,562 - OKGIIK_08695 0.34 -0.5 1,896,562 - OKGIIK_08695 0.34 +0.5 1,896,671 - OKGIIK_08695 0.44 +0.1 1,896,671 - OKGIIK_08695 0.44 +1.0 1,896,720 + OKGIIK_08695 0.49 +1.2 1,896,720 + OKGIIK_08695 0.49 +0.1 1,896,721 - OKGIIK_08695 0.49 +1.2 1,896,721 - OKGIIK_08695 0.49 +1.8 1,896,721 - OKGIIK_08695 0.49 -1.0 1,896,777 + OKGIIK_08695 0.54 -0.5 1,896,777 + OKGIIK_08695 0.54 -0.6 1,896,777 + OKGIIK_08695 0.54 +0.4 1,896,777 + OKGIIK_08695 0.54 -0.0 1,896,777 + OKGIIK_08695 0.54 -1.4 1,896,777 + OKGIIK_08695 0.54 -0.4 1,896,778 - OKGIIK_08695 0.54 -0.9 1,896,778 - OKGIIK_08695 0.54 -0.6 1,896,778 - OKGIIK_08695 0.54 -0.6 1,896,778 - OKGIIK_08695 0.54 +0.6 1,896,778 - OKGIIK_08695 0.54 -0.0 1,896,778 - OKGIIK_08695 0.54 +0.9 1,896,778 - OKGIIK_08695 0.54 -1.5 1,896,778 - OKGIIK_08695 0.54 +1.0 1,896,778 - OKGIIK_08695 0.54 -0.9 1,896,787 - OKGIIK_08695 0.55 -0.1 1,896,818 + OKGIIK_08695 0.58 +0.4 1,896,819 - OKGIIK_08695 0.58 -1.7 1,896,819 - OKGIIK_08695 0.58 +1.6 1,896,841 + OKGIIK_08695 0.60 +0.0 1,896,928 - OKGIIK_08695 0.68 -1.0 1,896,933 + OKGIIK_08695 0.68 -0.4 1,896,933 + OKGIIK_08695 0.68 -0.9 1,896,933 + OKGIIK_08695 0.68 +0.1 1,896,933 + OKGIIK_08695 0.68 +0.7 1,896,933 + OKGIIK_08695 0.68 +0.7 1,896,933 + OKGIIK_08695 0.68 -0.4 1,896,934 - OKGIIK_08695 0.68 -1.4 1,896,934 - OKGIIK_08695 0.68 +0.4 1,896,934 - OKGIIK_08695 0.68 +1.5 1,897,032 + OKGIIK_08695 0.77 +0.7 1,897,032 + OKGIIK_08695 0.77 -0.8 1,897,032 + OKGIIK_08695 0.77 +0.2 1,897,032 + OKGIIK_08695 0.77 -0.4 1,897,032 + OKGIIK_08695 0.77 +2.1 1,897,032 + OKGIIK_08695 0.77 -0.6 1,897,032 + OKGIIK_08695 0.77 -1.2 1,897,032 + OKGIIK_08695 0.77 +0.1 1,897,033 - OKGIIK_08695 0.78 +0.4 1,897,033 - OKGIIK_08695 0.78 -0.4 1,897,033 - OKGIIK_08695 0.78 -2.0 1,897,065 + OKGIIK_08695 0.80 -1.4 1,897,065 + OKGIIK_08695 0.80 -0.0 1,897,065 + OKGIIK_08695 0.80 -1.3 1,897,065 + OKGIIK_08695 0.80 -3.0 1,897,092 + OKGIIK_08695 0.83 +0.2 1,897,101 + OKGIIK_08695 0.84 +0.4 1,897,102 - OKGIIK_08695 0.84 -0.4
Or see this region's nucleotide sequence