Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05285

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_05270 and OKGIIK_05275 overlap by 4 nucleotidesOKGIIK_05275 and OKGIIK_05280 are separated by 1 nucleotidesOKGIIK_05280 and OKGIIK_05285 are separated by 52 nucleotidesOKGIIK_05285 and OKGIIK_05290 overlap by 4 nucleotidesOKGIIK_05290 and OKGIIK_05295 are separated by 351 nucleotides OKGIIK_05270: OKGIIK_05270 - Molybdopterin molybdenumtransferase, at 1,150,721 to 1,151,974 _05270 OKGIIK_05275: OKGIIK_05275 - Thiamine biosynthesis protein ThiS, at 1,151,971 to 1,152,231 _05275 OKGIIK_05280: OKGIIK_05280 - Molybdopterin synthase catalytic subunit, at 1,152,233 to 1,152,730 _05280 OKGIIK_05285: OKGIIK_05285 - Molybdenum cofactor guanylyltransferase, at 1,152,783 to 1,153,292 _05285 OKGIIK_05290: OKGIIK_05290 - hypothetical protein, at 1,153,289 to 1,153,642 _05290 OKGIIK_05295: OKGIIK_05295 - Nitrate/nitrite transporter, at 1,153,994 to 1,155,394 _05295 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.925 kb on + strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.926 kb on - strandat 1151.927 kb on + strandat 1151.928 kb on - strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.970 kb on + strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1151.971 kb on - strandat 1152.107 kb on + strand, within OKGIIK_05275at 1152.108 kb on - strand, within OKGIIK_05275at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.392 kb on + strand, within OKGIIK_05280at 1152.393 kb on - strand, within OKGIIK_05280at 1152.393 kb on - strand, within OKGIIK_05280at 1152.393 kb on - strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.479 kb on + strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.480 kb on - strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.629 kb on + strand, within OKGIIK_05280at 1152.630 kb on - strand, within OKGIIK_05280at 1152.630 kb on - strand, within OKGIIK_05280at 1152.892 kb on - strand, within OKGIIK_05285at 1152.984 kb on + strand, within OKGIIK_05285at 1152.984 kb on + strand, within OKGIIK_05285at 1152.984 kb on + strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1152.985 kb on - strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.094 kb on + strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.095 kb on - strand, within OKGIIK_05285at 1153.129 kb on + strand, within OKGIIK_05285at 1153.129 kb on + strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.130 kb on - strand, within OKGIIK_05285at 1153.219 kb on + strand, within OKGIIK_05285at 1153.220 kb on - strand, within OKGIIK_05285at 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.302 kb on + strandat 1153.303 kb on - strandat 1153.303 kb on - strandat 1153.303 kb on - strandat 1153.379 kb on - strand, within OKGIIK_05290at 1153.379 kb on - strand, within OKGIIK_05290at 1153.402 kb on + strand, within OKGIIK_05290at 1153.402 kb on + strand, within OKGIIK_05290at 1153.402 kb on + strand, within OKGIIK_05290at 1153.403 kb on - strand, within OKGIIK_05290at 1153.403 kb on - strand, within OKGIIK_05290at 1153.432 kb on + strand, within OKGIIK_05290at 1153.432 kb on + strand, within OKGIIK_05290at 1153.432 kb on + strand, within OKGIIK_05290at 1153.482 kb on + strand, within OKGIIK_05290at 1153.482 kb on + strand, within OKGIIK_05290at 1153.483 kb on - strand, within OKGIIK_05290at 1153.483 kb on - strand, within OKGIIK_05290at 1153.505 kb on + strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.506 kb on - strand, within OKGIIK_05290at 1153.569 kb on + strand, within OKGIIK_05290at 1153.570 kb on - strand, within OKGIIK_05290at 1153.608 kb on + strandat 1153.609 kb on - strandat 1153.609 kb on - strandat 1153.623 kb on + strandat 1153.624 kb on - strandat 1153.663 kb on + strandat 1153.664 kb on - strandat 1153.664 kb on - strandat 1153.730 kb on + strandat 1153.730 kb on + strandat 1153.731 kb on - strandat 1153.731 kb on - strandat 1153.731 kb on - strandat 1153.879 kb on + strandat 1153.902 kb on - strandat 1153.920 kb on + strandat 1153.920 kb on + strandat 1153.920 kb on + strandat 1153.921 kb on - strandat 1153.921 kb on - strandat 1153.921 kb on - strandat 1154.170 kb on - strand, within OKGIIK_05295at 1154.264 kb on + strand, within OKGIIK_05295at 1154.264 kb on + strand, within OKGIIK_05295at 1154.264 kb on + strand, within OKGIIK_05295at 1154.264 kb on + strand, within OKGIIK_05295at 1154.264 kb on + strand, within OKGIIK_05295at 1154.265 kb on - strand, within OKGIIK_05295at 1154.265 kb on - strand, within OKGIIK_05295

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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1,151,925 + -1.0
1,151,925 + +0.3
1,151,925 + +0.3
1,151,925 + +0.1
1,151,925 + -0.2
1,151,925 + -0.1
1,151,925 + -0.6
1,151,925 + -0.1
1,151,925 + +0.2
1,151,925 + -0.9
1,151,925 + -1.9
1,151,926 - -1.2
1,151,926 - +0.7
1,151,926 - -1.2
1,151,926 - +1.1
1,151,926 - +0.2
1,151,926 - -0.4
1,151,926 - +0.1
1,151,927 + +0.9
1,151,928 - -0.1
1,151,970 + -0.4
1,151,970 + +1.1
1,151,970 + +0.2
1,151,970 + -0.1
1,151,970 + -1.2
1,151,970 + +2.1
1,151,971 - -1.2
1,151,971 - -0.1
1,151,971 - +1.9
1,151,971 - -0.8
1,151,971 - -0.1
1,152,107 + OKGIIK_05275 0.52 -0.9
1,152,108 - OKGIIK_05275 0.52 -1.2
1,152,392 + OKGIIK_05280 0.32 +0.3
1,152,392 + OKGIIK_05280 0.32 -1.1
1,152,392 + OKGIIK_05280 0.32 -0.8
1,152,392 + OKGIIK_05280 0.32 -1.7
1,152,392 + OKGIIK_05280 0.32 -0.5
1,152,392 + OKGIIK_05280 0.32 -0.9
1,152,392 + OKGIIK_05280 0.32 -0.9
1,152,393 - OKGIIK_05280 0.32 -0.3
1,152,393 - OKGIIK_05280 0.32 +0.1
1,152,393 - OKGIIK_05280 0.32 -0.1
1,152,479 + OKGIIK_05280 0.49 +0.3
1,152,479 + OKGIIK_05280 0.49 -1.9
1,152,479 + OKGIIK_05280 0.49 -0.9
1,152,479 + OKGIIK_05280 0.49 +0.5
1,152,480 - OKGIIK_05280 0.50 -0.6
1,152,480 - OKGIIK_05280 0.50 -1.4
1,152,480 - OKGIIK_05280 0.50 +0.1
1,152,480 - OKGIIK_05280 0.50 -0.4
1,152,629 + OKGIIK_05280 0.80 -0.6
1,152,629 + OKGIIK_05280 0.80 -0.7
1,152,629 + OKGIIK_05280 0.80 +0.1
1,152,629 + OKGIIK_05280 0.80 +0.2
1,152,629 + OKGIIK_05280 0.80 -0.9
1,152,630 - OKGIIK_05280 0.80 +0.3
1,152,630 - OKGIIK_05280 0.80 -0.9
1,152,892 - OKGIIK_05285 0.21 -0.4
1,152,984 + OKGIIK_05285 0.39 +0.2
1,152,984 + OKGIIK_05285 0.39 -0.8
1,152,984 + OKGIIK_05285 0.39 +0.3
1,152,985 - OKGIIK_05285 0.40 -1.0
1,152,985 - OKGIIK_05285 0.40 +1.2
1,152,985 - OKGIIK_05285 0.40 +0.3
1,152,985 - OKGIIK_05285 0.40 -0.1
1,152,985 - OKGIIK_05285 0.40 +1.6
1,152,985 - OKGIIK_05285 0.40 -0.2
1,153,094 + OKGIIK_05285 0.61 -0.8
1,153,094 + OKGIIK_05285 0.61 -0.4
1,153,094 + OKGIIK_05285 0.61 +0.8
1,153,094 + OKGIIK_05285 0.61 -1.3
1,153,094 + OKGIIK_05285 0.61 +1.2
1,153,094 + OKGIIK_05285 0.61 +1.3
1,153,094 + OKGIIK_05285 0.61 -0.4
1,153,094 + OKGIIK_05285 0.61 -0.1
1,153,094 + OKGIIK_05285 0.61 +0.6
1,153,094 + OKGIIK_05285 0.61 -0.6
1,153,094 + OKGIIK_05285 0.61 +0.3
1,153,094 + OKGIIK_05285 0.61 -1.2
1,153,094 + OKGIIK_05285 0.61 -1.2
1,153,094 + OKGIIK_05285 0.61 +1.5
1,153,094 + OKGIIK_05285 0.61 -0.1
1,153,094 + OKGIIK_05285 0.61 -0.3
1,153,094 + OKGIIK_05285 0.61 -0.6
1,153,094 + OKGIIK_05285 0.61 -0.1
1,153,094 + OKGIIK_05285 0.61 -0.2
1,153,094 + OKGIIK_05285 0.61 -1.8
1,153,094 + OKGIIK_05285 0.61 -0.2
1,153,094 + OKGIIK_05285 0.61 +0.6
1,153,094 + OKGIIK_05285 0.61 -0.4
1,153,094 + OKGIIK_05285 0.61 -1.1
1,153,094 + OKGIIK_05285 0.61 -1.1
1,153,094 + OKGIIK_05285 0.61 -0.4
1,153,094 + OKGIIK_05285 0.61 -0.2
1,153,094 + OKGIIK_05285 0.61 -0.1
1,153,094 + OKGIIK_05285 0.61 -0.3
1,153,094 + OKGIIK_05285 0.61 -1.2
1,153,094 + OKGIIK_05285 0.61 -1.7
1,153,094 + OKGIIK_05285 0.61 -0.5
1,153,095 - OKGIIK_05285 0.61 -0.2
1,153,095 - OKGIIK_05285 0.61 +1.1
1,153,095 - OKGIIK_05285 0.61 +0.2
1,153,095 - OKGIIK_05285 0.61 -1.7
1,153,095 - OKGIIK_05285 0.61 -0.3
1,153,095 - OKGIIK_05285 0.61 -1.7
1,153,095 - OKGIIK_05285 0.61 -1.2
1,153,095 - OKGIIK_05285 0.61 +0.4
1,153,095 - OKGIIK_05285 0.61 -0.9
1,153,095 - OKGIIK_05285 0.61 +0.2
1,153,095 - OKGIIK_05285 0.61 -1.2
1,153,095 - OKGIIK_05285 0.61 +1.3
1,153,095 - OKGIIK_05285 0.61 -0.6
1,153,095 - OKGIIK_05285 0.61 -2.5
1,153,095 - OKGIIK_05285 0.61 -1.1
1,153,095 - OKGIIK_05285 0.61 -0.4
1,153,095 - OKGIIK_05285 0.61 -0.1
1,153,095 - OKGIIK_05285 0.61 -0.4
1,153,129 + OKGIIK_05285 0.68 +0.5
1,153,129 + OKGIIK_05285 0.68 -0.8
1,153,130 - OKGIIK_05285 0.68 +0.1
1,153,130 - OKGIIK_05285 0.68 -0.4
1,153,130 - OKGIIK_05285 0.68 +0.1
1,153,130 - OKGIIK_05285 0.68 +1.9
1,153,219 + OKGIIK_05285 0.85 -0.4
1,153,220 - OKGIIK_05285 0.86 +1.0
1,153,302 + -0.4
1,153,302 + -0.2
1,153,302 + +0.1
1,153,302 + -0.1
1,153,302 + +0.0
1,153,302 + -1.5
1,153,302 + -0.2
1,153,302 + -1.1
1,153,302 + -1.6
1,153,302 + +0.0
1,153,302 + -0.9
1,153,302 + +0.1
1,153,303 - -1.2
1,153,303 - -1.8
1,153,303 - +0.0
1,153,379 - OKGIIK_05290 0.25 +0.3
1,153,379 - OKGIIK_05290 0.25 -2.0
1,153,402 + OKGIIK_05290 0.32 +1.4
1,153,402 + OKGIIK_05290 0.32 -2.1
1,153,402 + OKGIIK_05290 0.32 +1.5
1,153,403 - OKGIIK_05290 0.32 -1.0
1,153,403 - OKGIIK_05290 0.32 +1.1
1,153,432 + OKGIIK_05290 0.40 -0.6
1,153,432 + OKGIIK_05290 0.40 +1.1
1,153,432 + OKGIIK_05290 0.40 -0.9
1,153,482 + OKGIIK_05290 0.55 -0.5
1,153,482 + OKGIIK_05290 0.55 -0.7
1,153,483 - OKGIIK_05290 0.55 -0.5
1,153,483 - OKGIIK_05290 0.55 -0.1
1,153,505 + OKGIIK_05290 0.61 -0.5
1,153,506 - OKGIIK_05290 0.61 -1.5
1,153,506 - OKGIIK_05290 0.61 -2.0
1,153,506 - OKGIIK_05290 0.61 +0.5
1,153,506 - OKGIIK_05290 0.61 -1.4
1,153,506 - OKGIIK_05290 0.61 -0.4
1,153,506 - OKGIIK_05290 0.61 -1.0
1,153,506 - OKGIIK_05290 0.61 +0.9
1,153,569 + OKGIIK_05290 0.79 -0.2
1,153,570 - OKGIIK_05290 0.79 -0.1
1,153,608 + +0.3
1,153,609 - -1.2
1,153,609 - +0.3
1,153,623 + -1.4
1,153,624 - -0.5
1,153,663 + +1.3
1,153,664 - +0.9
1,153,664 - -1.1
1,153,730 + -1.4
1,153,730 + -0.4
1,153,731 - +0.5
1,153,731 - -0.1
1,153,731 - -0.1
1,153,879 + -1.4
1,153,902 - -1.2
1,153,920 + -0.9
1,153,920 + -1.2
1,153,920 + +0.9
1,153,921 - -0.9
1,153,921 - +0.3
1,153,921 - +0.9
1,154,170 - OKGIIK_05295 0.13 +0.3
1,154,264 + OKGIIK_05295 0.19 +1.1
1,154,264 + OKGIIK_05295 0.19 +0.7
1,154,264 + OKGIIK_05295 0.19 -1.2
1,154,264 + OKGIIK_05295 0.19 -1.2
1,154,264 + OKGIIK_05295 0.19 -3.0
1,154,265 - OKGIIK_05295 0.19 -0.5
1,154,265 - OKGIIK_05295 0.19 +0.9

Or see this region's nucleotide sequence