Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrA and OKGIIK_03985 are separated by 149 nucleotides OKGIIK_03985 and rplU are separated by 110 nucleotides rplU and rpmA are separated by 19 nucleotides rpmA and obgE are separated by 178 nucleotides
OKGIIK_03980: uvrA - excinuclease ABC subunit UvrA, at 870,725 to 873,688
uvrA
OKGIIK_03985: OKGIIK_03985 - DUF2059 domain-containing protein, at 873,838 to 874,470
_03985
OKGIIK_03990: rplU - 50S ribosomal protein L21, at 874,581 to 874,895
rplU
OKGIIK_03995: rpmA - 50S ribosomal protein L27, at 874,915 to 875,172
rpmA
OKGIIK_04000: obgE - GTPase ObgE, at 875,351 to 876,430
obgE
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.889 kb on + strand, within uvrA at 872.889 kb on + strand, within uvrA at 872.890 kb on - strand, within uvrA at 872.890 kb on - strand, within uvrA at 872.890 kb on - strand, within uvrA at 872.910 kb on + strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 872.911 kb on - strand, within uvrA at 873.246 kb on + strand, within uvrA at 873.246 kb on + strand, within uvrA at 873.246 kb on + strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.247 kb on - strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.354 kb on + strand, within uvrA at 873.355 kb on - strand, within uvrA at 873.355 kb on - strand, within uvrA at 873.355 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.370 kb on - strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.375 kb on + strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.376 kb on - strand, within uvrA at 873.510 kb on + strand at 873.511 kb on - strand at 873.531 kb on + strand at 873.531 kb on + strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.552 kb on + strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.553 kb on - strand at 873.699 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.741 kb on + strand at 873.741 kb on + strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.843 kb on + strand at 873.844 kb on - strand at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.510 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.287 kb on + strand at 875.287 kb on + strand at 875.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 872,889 + uvrA OKGIIK_03980 0.73 +0.6 872,889 + uvrA OKGIIK_03980 0.73 -1.4 872,890 - uvrA OKGIIK_03980 0.73 +0.6 872,890 - uvrA OKGIIK_03980 0.73 -0.8 872,890 - uvrA OKGIIK_03980 0.73 -1.6 872,910 + uvrA OKGIIK_03980 0.74 -2.0 872,911 - uvrA OKGIIK_03980 0.74 -0.7 872,911 - uvrA OKGIIK_03980 0.74 -1.9 872,911 - uvrA OKGIIK_03980 0.74 +0.7 872,911 - uvrA OKGIIK_03980 0.74 -1.0 872,911 - uvrA OKGIIK_03980 0.74 -1.4 873,246 + uvrA OKGIIK_03980 0.85 -0.0 873,246 + uvrA OKGIIK_03980 0.85 -0.8 873,246 + uvrA OKGIIK_03980 0.85 -0.8 873,247 - uvrA OKGIIK_03980 0.85 +1.4 873,247 - uvrA OKGIIK_03980 0.85 -0.4 873,247 - uvrA OKGIIK_03980 0.85 +0.6 873,247 - uvrA OKGIIK_03980 0.85 +0.6 873,354 + uvrA OKGIIK_03980 0.89 -0.8 873,354 + uvrA OKGIIK_03980 0.89 -0.6 873,354 + uvrA OKGIIK_03980 0.89 +0.1 873,354 + uvrA OKGIIK_03980 0.89 -0.8 873,354 + uvrA OKGIIK_03980 0.89 -1.6 873,354 + uvrA OKGIIK_03980 0.89 -3.0 873,355 - uvrA OKGIIK_03980 0.89 -0.3 873,355 - uvrA OKGIIK_03980 0.89 -1.3 873,355 - uvrA OKGIIK_03980 0.89 -0.6 873,370 - uvrA OKGIIK_03980 0.89 -0.8 873,370 - uvrA OKGIIK_03980 0.89 -1.2 873,370 - uvrA OKGIIK_03980 0.89 +0.6 873,370 - uvrA OKGIIK_03980 0.89 -0.4 873,370 - uvrA OKGIIK_03980 0.89 -1.4 873,370 - uvrA OKGIIK_03980 0.89 -0.1 873,375 + uvrA OKGIIK_03980 0.89 +0.2 873,375 + uvrA OKGIIK_03980 0.89 +0.1 873,375 + uvrA OKGIIK_03980 0.89 -0.6 873,375 + uvrA OKGIIK_03980 0.89 -0.7 873,375 + uvrA OKGIIK_03980 0.89 +0.3 873,375 + uvrA OKGIIK_03980 0.89 -1.2 873,375 + uvrA OKGIIK_03980 0.89 +2.0 873,375 + uvrA OKGIIK_03980 0.89 -0.8 873,375 + uvrA OKGIIK_03980 0.89 -1.2 873,375 + uvrA OKGIIK_03980 0.89 -1.0 873,375 + uvrA OKGIIK_03980 0.89 -0.4 873,376 - uvrA OKGIIK_03980 0.89 -0.1 873,376 - uvrA OKGIIK_03980 0.89 -2.5 873,376 - uvrA OKGIIK_03980 0.89 -0.8 873,376 - uvrA OKGIIK_03980 0.89 -1.5 873,376 - uvrA OKGIIK_03980 0.89 -0.8 873,376 - uvrA OKGIIK_03980 0.89 +0.3 873,376 - uvrA OKGIIK_03980 0.89 -1.8 873,376 - uvrA OKGIIK_03980 0.89 -1.4 873,376 - uvrA OKGIIK_03980 0.89 -0.8 873,376 - uvrA OKGIIK_03980 0.89 -1.8 873,376 - uvrA OKGIIK_03980 0.89 -1.6 873,376 - uvrA OKGIIK_03980 0.89 -2.1 873,376 - uvrA OKGIIK_03980 0.89 -1.9 873,376 - uvrA OKGIIK_03980 0.89 -1.4 873,376 - uvrA OKGIIK_03980 0.89 -1.0 873,376 - uvrA OKGIIK_03980 0.89 +0.6 873,376 - uvrA OKGIIK_03980 0.89 +0.1 873,510 + -0.4 873,511 - -0.4 873,531 + -0.6 873,531 + +0.6 873,532 - -2.2 873,532 - -1.2 873,532 - -2.6 873,532 - +0.7 873,552 + -0.7 873,552 + -1.0 873,552 + -0.1 873,552 + -0.8 873,552 + -0.9 873,553 - -1.6 873,553 - -0.2 873,553 - -1.0 873,553 - -0.7 873,553 - -0.4 873,553 - -0.6 873,553 - -0.9 873,553 - -1.0 873,553 - -0.4 873,699 + -0.4 873,718 + -1.2 873,718 + -0.7 873,718 + -1.4 873,718 + -1.2 873,718 + -1.0 873,718 + -0.0 873,718 + -2.7 873,718 + -0.2 873,718 + +0.6 873,719 - -0.4 873,719 - +0.6 873,719 - +1.1 873,719 - -0.1 873,719 - -0.0 873,719 - -0.8 873,719 - -1.0 873,720 + -1.0 873,720 + -0.2 873,720 + +0.6 873,720 + -0.6 873,720 + -1.0 873,720 + -0.4 873,720 + -1.2 873,720 + -0.3 873,720 + -0.6 873,720 + -0.6 873,720 + -0.0 873,720 + +1.0 873,720 + +1.1 873,720 + -0.2 873,720 + -0.4 873,720 + -0.0 873,720 + +0.8 873,721 - -0.1 873,721 - -0.8 873,721 - -0.6 873,721 - -1.0 873,721 - +0.6 873,721 - -2.4 873,721 - +1.0 873,721 - -1.3 873,721 - +1.1 873,721 - -1.1 873,721 - -2.8 873,721 - -2.8 873,721 - -0.4 873,721 - -2.1 873,721 - -0.4 873,741 + -0.4 873,741 + +1.1 873,742 - -1.6 873,742 - +1.6 873,742 - -0.8 873,742 - -1.6 873,742 - -1.0 873,781 + -1.9 873,781 + -1.8 873,781 + +0.8 873,781 + +0.4 873,781 + -0.2 873,781 + +0.8 873,781 + -0.7 873,781 + -1.9 873,781 + -1.0 873,781 + -0.8 873,781 + -1.0 873,781 + -1.7 873,781 + +1.6 873,781 + +0.4 873,781 + -0.4 873,781 + -0.4 873,781 + -1.5 873,781 + -0.6 873,781 + -0.8 873,781 + +1.0 873,781 + -0.4 873,781 + -0.8 873,781 + -0.9 873,781 + -0.8 873,781 + -1.9 873,781 + -0.8 873,781 + -1.2 873,781 + +1.1 873,781 + +1.6 873,781 + -1.2 873,781 + +0.3 873,781 + -0.4 873,781 + -1.8 873,781 + +1.1 873,782 - -0.6 873,782 - -1.2 873,782 - -0.8 873,782 - +1.6 873,782 - -2.1 873,782 - -1.2 873,782 - -0.8 873,782 - -1.5 873,782 - +1.6 873,782 - -2.8 873,782 - -0.8 873,782 - -0.0 873,782 - -0.0 873,782 - +1.1 873,782 - +0.7 873,782 - +1.1 873,782 - -1.7 873,782 - -1.6 873,782 - +0.6 873,782 - -1.2 873,782 - -0.0 873,782 - -1.4 873,782 - +0.6 873,782 - +1.6 873,782 - -1.0 873,782 - -1.4 873,788 + +1.0 873,788 + +0.6 873,788 + -1.3 873,788 + +0.7 873,788 + -3.6 873,788 + -0.8 873,788 + -2.7 873,788 + +1.3 873,788 + -0.4 873,788 + -0.0 873,788 + -0.4 873,788 + -2.1 873,788 + -0.4 873,789 - -0.4 873,789 - +0.6 873,789 - -0.3 873,789 - -1.6 873,789 - -1.4 873,789 - +1.6 873,789 - -0.4 873,789 - +0.6 873,789 - +1.1 873,843 + -1.1 873,844 - -0.4 873,929 + OKGIIK_03985 0.14 -0.9 873,929 + OKGIIK_03985 0.14 -0.8 873,929 + OKGIIK_03985 0.14 +2.1 873,929 + OKGIIK_03985 0.14 -1.2 873,929 + OKGIIK_03985 0.14 -0.2 873,929 + OKGIIK_03985 0.14 -1.8 873,929 + OKGIIK_03985 0.14 -1.6 873,929 + OKGIIK_03985 0.14 -0.0 873,929 + OKGIIK_03985 0.14 +1.1 873,929 + OKGIIK_03985 0.14 -0.8 873,930 - OKGIIK_03985 0.15 -1.6 873,930 - OKGIIK_03985 0.15 +2.0 873,930 - OKGIIK_03985 0.15 -0.2 873,930 - OKGIIK_03985 0.15 -0.4 873,930 - OKGIIK_03985 0.15 -1.0 874,033 + OKGIIK_03985 0.31 +1.6 874,033 + OKGIIK_03985 0.31 -0.0 874,033 + OKGIIK_03985 0.31 -1.6 874,034 - OKGIIK_03985 0.31 +0.1 874,034 - OKGIIK_03985 0.31 +1.3 874,034 - OKGIIK_03985 0.31 -1.8 874,144 + OKGIIK_03985 0.48 +0.8 874,144 + OKGIIK_03985 0.48 -0.6 874,144 + OKGIIK_03985 0.48 +0.8 874,144 + OKGIIK_03985 0.48 +1.6 874,144 + OKGIIK_03985 0.48 -0.8 874,144 + OKGIIK_03985 0.48 -0.8 874,145 - OKGIIK_03985 0.48 -0.3 874,145 - OKGIIK_03985 0.48 +0.3 874,145 - OKGIIK_03985 0.48 -1.9 874,145 - OKGIIK_03985 0.48 +0.2 874,145 - OKGIIK_03985 0.48 -0.2 874,145 - OKGIIK_03985 0.48 -1.5 874,510 + +0.8 875,260 + -1.0 875,260 + +0.6 875,260 + -0.6 875,260 + -0.4 875,260 + -0.2 875,260 + +1.6 875,260 + -2.4 875,260 + +0.2 875,260 + -0.1 875,260 + -0.8 875,261 - -0.4 875,261 - -0.8 875,261 - +0.6 875,261 - -0.9 875,261 - -0.6 875,287 + -1.0 875,287 + -0.6 875,288 - -0.7
Or see this region's nucleotide sequence