Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_02615

Experiment: R2A_PIPES with Cobalt chloride 1024 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_02605 and OKGIIK_02610 are separated by 1 nucleotidesOKGIIK_02610 and OKGIIK_02615 overlap by 1 nucleotidesOKGIIK_02615 and OKGIIK_02620 are separated by 42 nucleotides OKGIIK_02605: OKGIIK_02605 - hypothetical protein, at 609,609 to 609,764 _02605 OKGIIK_02610: OKGIIK_02610 - MBL fold metallo-hydrolase, at 609,766 to 610,638 _02610 OKGIIK_02615: OKGIIK_02615 - Transmembrane protein 43, at 610,638 to 611,672 _02615 OKGIIK_02620: OKGIIK_02620 - Diguanylate phosphodiesterase, at 611,715 to 613,007 _02620 Position (kb) 610 611 612Strain fitness (log2 ratio) -2 -1 0 1 2at 609.758 kb on + strandat 609.758 kb on + strandat 609.758 kb on + strandat 609.758 kb on + strandat 609.758 kb on + strandat 609.758 kb on + strandat 609.758 kb on + strandat 609.758 kb on + strandat 610.034 kb on + strand, within OKGIIK_02610at 610.034 kb on + strand, within OKGIIK_02610at 610.034 kb on + strand, within OKGIIK_02610at 610.035 kb on - strand, within OKGIIK_02610at 610.035 kb on - strand, within OKGIIK_02610at 610.035 kb on - strand, within OKGIIK_02610at 610.432 kb on + strand, within OKGIIK_02610at 610.752 kb on + strand, within OKGIIK_02615at 610.753 kb on - strand, within OKGIIK_02615at 610.977 kb on + strand, within OKGIIK_02615at 610.977 kb on + strand, within OKGIIK_02615at 610.977 kb on + strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 610.978 kb on - strand, within OKGIIK_02615at 611.217 kb on + strand, within OKGIIK_02615at 611.217 kb on + strand, within OKGIIK_02615at 611.217 kb on + strand, within OKGIIK_02615at 611.217 kb on + strand, within OKGIIK_02615at 611.218 kb on - strand, within OKGIIK_02615at 611.218 kb on - strand, within OKGIIK_02615at 611.218 kb on - strand, within OKGIIK_02615at 611.218 kb on - strand, within OKGIIK_02615at 611.218 kb on - strand, within OKGIIK_02615at 611.218 kb on - strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.367 kb on + strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.368 kb on - strand, within OKGIIK_02615at 611.609 kb on - strandat 611.609 kb on - strandat 611.609 kb on - strandat 611.716 kb on + strandat 611.716 kb on + strandat 611.749 kb on + strandat 611.749 kb on + strandat 611.749 kb on + strandat 611.749 kb on + strandat 611.749 kb on + strandat 611.750 kb on - strandat 611.750 kb on - strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.782 kb on + strandat 611.783 kb on - strandat 611.783 kb on - strandat 611.783 kb on - strandat 611.783 kb on - strandat 611.783 kb on - strandat 611.783 kb on - strandat 612.202 kb on + strand, within OKGIIK_02620at 612.202 kb on + strand, within OKGIIK_02620at 612.202 kb on + strand, within OKGIIK_02620at 612.202 kb on + strand, within OKGIIK_02620at 612.202 kb on + strand, within OKGIIK_02620at 612.203 kb on - strand, within OKGIIK_02620at 612.203 kb on - strand, within OKGIIK_02620at 612.203 kb on - strand, within OKGIIK_02620at 612.203 kb on - strand, within OKGIIK_02620at 612.203 kb on - strand, within OKGIIK_02620at 612.203 kb on - strand, within OKGIIK_02620at 612.232 kb on + strand, within OKGIIK_02620at 612.232 kb on + strand, within OKGIIK_02620at 612.232 kb on + strand, within OKGIIK_02620at 612.232 kb on + strand, within OKGIIK_02620at 612.232 kb on + strand, within OKGIIK_02620at 612.232 kb on + strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.233 kb on - strand, within OKGIIK_02620at 612.376 kb on + strand, within OKGIIK_02620at 612.377 kb on - strand, within OKGIIK_02620at 612.377 kb on - strand, within OKGIIK_02620at 612.421 kb on + strand, within OKGIIK_02620at 612.421 kb on + strand, within OKGIIK_02620at 612.421 kb on + strand, within OKGIIK_02620at 612.421 kb on + strand, within OKGIIK_02620at 612.421 kb on + strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.422 kb on - strand, within OKGIIK_02620at 612.472 kb on + strand, within OKGIIK_02620at 612.472 kb on + strand, within OKGIIK_02620at 612.473 kb on - strand, within OKGIIK_02620at 612.473 kb on - strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.534 kb on + strand, within OKGIIK_02620at 612.535 kb on - strand, within OKGIIK_02620at 612.535 kb on - strand, within OKGIIK_02620at 612.535 kb on - strand, within OKGIIK_02620at 612.535 kb on - strand, within OKGIIK_02620at 612.670 kb on + strand, within OKGIIK_02620at 612.671 kb on - strand, within OKGIIK_02620

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM
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609,758 + +0.1
609,758 + -0.7
609,758 + +1.2
609,758 + -0.1
609,758 + +0.2
609,758 + -0.7
609,758 + +0.9
609,758 + -1.9
610,034 + OKGIIK_02610 0.31 -0.6
610,034 + OKGIIK_02610 0.31 -0.1
610,034 + OKGIIK_02610 0.31 +0.6
610,035 - OKGIIK_02610 0.31 -1.7
610,035 - OKGIIK_02610 0.31 -1.5
610,035 - OKGIIK_02610 0.31 +0.3
610,432 + OKGIIK_02610 0.76 -0.3
610,752 + OKGIIK_02615 0.11 -0.4
610,753 - OKGIIK_02615 0.11 +0.9
610,977 + OKGIIK_02615 0.33 -1.5
610,977 + OKGIIK_02615 0.33 -1.0
610,977 + OKGIIK_02615 0.33 -1.0
610,978 - OKGIIK_02615 0.33 -0.4
610,978 - OKGIIK_02615 0.33 -1.0
610,978 - OKGIIK_02615 0.33 +0.0
610,978 - OKGIIK_02615 0.33 -0.4
610,978 - OKGIIK_02615 0.33 -2.7
610,978 - OKGIIK_02615 0.33 -1.3
610,978 - OKGIIK_02615 0.33 -0.5
611,217 + OKGIIK_02615 0.56 +0.0
611,217 + OKGIIK_02615 0.56 -0.9
611,217 + OKGIIK_02615 0.56 +0.6
611,217 + OKGIIK_02615 0.56 -0.9
611,218 - OKGIIK_02615 0.56 -0.7
611,218 - OKGIIK_02615 0.56 +0.0
611,218 - OKGIIK_02615 0.56 +0.2
611,218 - OKGIIK_02615 0.56 -0.3
611,218 - OKGIIK_02615 0.56 +0.9
611,218 - OKGIIK_02615 0.56 -0.9
611,367 + OKGIIK_02615 0.70 +0.6
611,367 + OKGIIK_02615 0.70 +0.4
611,367 + OKGIIK_02615 0.70 +0.3
611,367 + OKGIIK_02615 0.70 -1.4
611,367 + OKGIIK_02615 0.70 +0.5
611,367 + OKGIIK_02615 0.70 +0.0
611,367 + OKGIIK_02615 0.70 +0.6
611,367 + OKGIIK_02615 0.70 +0.9
611,367 + OKGIIK_02615 0.70 -0.3
611,367 + OKGIIK_02615 0.70 +1.1
611,367 + OKGIIK_02615 0.70 -0.8
611,367 + OKGIIK_02615 0.70 +0.6
611,367 + OKGIIK_02615 0.70 -0.1
611,367 + OKGIIK_02615 0.70 -0.1
611,367 + OKGIIK_02615 0.70 +1.1
611,368 - OKGIIK_02615 0.71 -1.3
611,368 - OKGIIK_02615 0.71 +0.3
611,368 - OKGIIK_02615 0.71 -0.5
611,368 - OKGIIK_02615 0.71 -0.1
611,368 - OKGIIK_02615 0.71 +1.4
611,368 - OKGIIK_02615 0.71 +2.3
611,368 - OKGIIK_02615 0.71 +0.6
611,368 - OKGIIK_02615 0.71 +1.9
611,368 - OKGIIK_02615 0.71 -1.7
611,368 - OKGIIK_02615 0.71 +0.9
611,368 - OKGIIK_02615 0.71 +0.4
611,609 - -1.7
611,609 - +0.3
611,609 - -1.1
611,716 + -0.4
611,716 + -1.7
611,749 + +0.3
611,749 + -0.6
611,749 + -0.3
611,749 + +0.5
611,749 + +0.1
611,750 - -1.9
611,750 - +0.6
611,782 + +0.6
611,782 + -0.1
611,782 + -0.7
611,782 + -0.9
611,782 + -0.4
611,782 + -1.1
611,782 + +1.1
611,782 + -1.0
611,782 + -0.2
611,782 + +0.7
611,782 + +0.2
611,783 - +1.8
611,783 - -1.7
611,783 - -2.3
611,783 - -0.2
611,783 - -2.0
611,783 - -0.3
612,202 + OKGIIK_02620 0.38 -0.1
612,202 + OKGIIK_02620 0.38 -1.4
612,202 + OKGIIK_02620 0.38 -0.4
612,202 + OKGIIK_02620 0.38 +1.2
612,202 + OKGIIK_02620 0.38 -0.2
612,203 - OKGIIK_02620 0.38 +0.2
612,203 - OKGIIK_02620 0.38 -0.0
612,203 - OKGIIK_02620 0.38 -0.1
612,203 - OKGIIK_02620 0.38 +0.7
612,203 - OKGIIK_02620 0.38 +1.9
612,203 - OKGIIK_02620 0.38 -0.4
612,232 + OKGIIK_02620 0.40 +0.4
612,232 + OKGIIK_02620 0.40 +1.3
612,232 + OKGIIK_02620 0.40 -0.5
612,232 + OKGIIK_02620 0.40 -1.5
612,232 + OKGIIK_02620 0.40 +0.7
612,232 + OKGIIK_02620 0.40 +0.1
612,233 - OKGIIK_02620 0.40 -0.3
612,233 - OKGIIK_02620 0.40 -0.9
612,233 - OKGIIK_02620 0.40 +0.9
612,233 - OKGIIK_02620 0.40 -0.7
612,233 - OKGIIK_02620 0.40 +0.8
612,233 - OKGIIK_02620 0.40 -1.3
612,233 - OKGIIK_02620 0.40 -0.7
612,233 - OKGIIK_02620 0.40 -1.5
612,233 - OKGIIK_02620 0.40 +0.9
612,233 - OKGIIK_02620 0.40 +0.5
612,233 - OKGIIK_02620 0.40 -1.1
612,233 - OKGIIK_02620 0.40 -0.4
612,233 - OKGIIK_02620 0.40 -2.4
612,233 - OKGIIK_02620 0.40 -1.5
612,233 - OKGIIK_02620 0.40 +1.5
612,233 - OKGIIK_02620 0.40 -0.1
612,376 + OKGIIK_02620 0.51 -0.7
612,377 - OKGIIK_02620 0.51 -0.3
612,377 - OKGIIK_02620 0.51 +0.3
612,421 + OKGIIK_02620 0.55 -0.4
612,421 + OKGIIK_02620 0.55 +0.2
612,421 + OKGIIK_02620 0.55 -0.8
612,421 + OKGIIK_02620 0.55 +0.7
612,421 + OKGIIK_02620 0.55 +0.6
612,422 - OKGIIK_02620 0.55 +1.0
612,422 - OKGIIK_02620 0.55 +0.0
612,422 - OKGIIK_02620 0.55 -0.7
612,422 - OKGIIK_02620 0.55 -0.4
612,422 - OKGIIK_02620 0.55 -1.5
612,422 - OKGIIK_02620 0.55 -0.7
612,422 - OKGIIK_02620 0.55 -1.9
612,472 + OKGIIK_02620 0.59 -0.4
612,472 + OKGIIK_02620 0.59 -0.4
612,473 - OKGIIK_02620 0.59 -0.2
612,473 - OKGIIK_02620 0.59 +0.7
612,534 + OKGIIK_02620 0.63 -0.1
612,534 + OKGIIK_02620 0.63 -0.8
612,534 + OKGIIK_02620 0.63 +0.0
612,534 + OKGIIK_02620 0.63 -0.7
612,534 + OKGIIK_02620 0.63 +1.0
612,534 + OKGIIK_02620 0.63 -0.3
612,534 + OKGIIK_02620 0.63 -1.7
612,534 + OKGIIK_02620 0.63 -1.8
612,535 - OKGIIK_02620 0.63 -0.1
612,535 - OKGIIK_02620 0.63 -0.4
612,535 - OKGIIK_02620 0.63 -0.4
612,535 - OKGIIK_02620 0.63 -0.7
612,670 + OKGIIK_02620 0.74 -1.4
612,671 - OKGIIK_02620 0.74 -0.1

Or see this region's nucleotide sequence