Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06801

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06799 and MPMX19_06800 overlap by 4 nucleotidesMPMX19_06800 and MPMX19_06801 are separated by 4 nucleotidesMPMX19_06801 and MPMX19_06802 overlap by 4 nucleotidesMPMX19_06802 and MPMX19_06803 are separated by 24 nucleotides MPMX19_06799: MPMX19_06799 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,214 to 64,954 _06799 MPMX19_06800: MPMX19_06800 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 64,951 to 65,619 _06800 MPMX19_06801: MPMX19_06801 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 65,624 to 66,955 _06801 MPMX19_06802: MPMX19_06802 - hypothetical protein, at 66,952 to 67,503 _06802 MPMX19_06803: MPMX19_06803 - Solute-binding protein, at 67,528 to 68,562 _06803 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.668 kb on + strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.669 kb on - strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.797 kb on + strand, within MPMX19_06799at 64.798 kb on - strand, within MPMX19_06799at 65.060 kb on - strand, within MPMX19_06800at 65.480 kb on + strand, within MPMX19_06800at 65.480 kb on + strand, within MPMX19_06800at 65.481 kb on - strand, within MPMX19_06800at 65.492 kb on + strand, within MPMX19_06800at 65.492 kb on + strand, within MPMX19_06800at 65.492 kb on + strand, within MPMX19_06800at 65.493 kb on - strand, within MPMX19_06800at 65.493 kb on - strand, within MPMX19_06800at 65.493 kb on - strand, within MPMX19_06800at 65.522 kb on + strand, within MPMX19_06800at 65.522 kb on + strand, within MPMX19_06800at 65.588 kb on + strandat 65.588 kb on + strandat 65.589 kb on - strandat 65.589 kb on - strandat 65.772 kb on + strand, within MPMX19_06801at 65.772 kb on + strand, within MPMX19_06801at 65.772 kb on + strand, within MPMX19_06801at 65.773 kb on - strand, within MPMX19_06801at 65.773 kb on - strand, within MPMX19_06801at 65.773 kb on - strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.961 kb on + strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 65.962 kb on - strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.234 kb on + strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.235 kb on - strand, within MPMX19_06801at 66.379 kb on - strand, within MPMX19_06801at 66.456 kb on + strand, within MPMX19_06801at 66.456 kb on + strand, within MPMX19_06801at 66.457 kb on - strand, within MPMX19_06801at 66.541 kb on - strand, within MPMX19_06801at 66.541 kb on - strand, within MPMX19_06801at 66.772 kb on - strand, within MPMX19_06801at 66.772 kb on - strand, within MPMX19_06801at 66.772 kb on - strand, within MPMX19_06801at 66.772 kb on - strand, within MPMX19_06801at 66.772 kb on - strand, within MPMX19_06801at 66.772 kb on - strand, within MPMX19_06801at 66.849 kb on + strandat 66.849 kb on + strandat 66.849 kb on + strandat 66.850 kb on - strandat 66.850 kb on - strandat 66.850 kb on - strandat 66.850 kb on - strandat 66.850 kb on - strandat 67.646 kb on + strand, within MPMX19_06803at 67.647 kb on - strand, within MPMX19_06803at 67.647 kb on - strand, within MPMX19_06803at 67.715 kb on - strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.850 kb on + strand, within MPMX19_06803at 67.850 kb on + strand, within MPMX19_06803at 67.850 kb on + strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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64,668 + MPMX19_06799 0.61 +0.7
64,669 - MPMX19_06799 0.61 -0.2
64,669 - MPMX19_06799 0.61 +0.7
64,669 - MPMX19_06799 0.61 -0.0
64,669 - MPMX19_06799 0.61 +1.9
64,797 + MPMX19_06799 0.79 -1.2
64,797 + MPMX19_06799 0.79 +0.2
64,797 + MPMX19_06799 0.79 -0.7
64,797 + MPMX19_06799 0.79 +0.2
64,797 + MPMX19_06799 0.79 +0.1
64,798 - MPMX19_06799 0.79 +0.0
65,060 - MPMX19_06800 0.16 -0.3
65,480 + MPMX19_06800 0.79 -1.4
65,480 + MPMX19_06800 0.79 +0.5
65,481 - MPMX19_06800 0.79 -0.8
65,492 + MPMX19_06800 0.81 +0.4
65,492 + MPMX19_06800 0.81 +0.7
65,492 + MPMX19_06800 0.81 -0.3
65,493 - MPMX19_06800 0.81 -0.5
65,493 - MPMX19_06800 0.81 +0.1
65,493 - MPMX19_06800 0.81 +0.2
65,522 + MPMX19_06800 0.85 -0.9
65,522 + MPMX19_06800 0.85 -0.5
65,588 + +1.1
65,588 + -0.6
65,589 - -0.8
65,589 - +0.3
65,772 + MPMX19_06801 0.11 +0.2
65,772 + MPMX19_06801 0.11 -2.1
65,772 + MPMX19_06801 0.11 -1.8
65,773 - MPMX19_06801 0.11 +0.1
65,773 - MPMX19_06801 0.11 +1.8
65,773 - MPMX19_06801 0.11 -0.2
65,961 + MPMX19_06801 0.25 +1.5
65,961 + MPMX19_06801 0.25 -1.9
65,961 + MPMX19_06801 0.25 +0.7
65,961 + MPMX19_06801 0.25 +0.1
65,961 + MPMX19_06801 0.25 -1.4
65,961 + MPMX19_06801 0.25 -0.6
65,961 + MPMX19_06801 0.25 -1.2
65,961 + MPMX19_06801 0.25 -0.3
65,961 + MPMX19_06801 0.25 -0.4
65,961 + MPMX19_06801 0.25 -0.5
65,961 + MPMX19_06801 0.25 +0.2
65,961 + MPMX19_06801 0.25 +1.1
65,961 + MPMX19_06801 0.25 -0.3
65,961 + MPMX19_06801 0.25 -0.3
65,962 - MPMX19_06801 0.25 +0.1
65,962 - MPMX19_06801 0.25 -0.8
65,962 - MPMX19_06801 0.25 -1.3
65,962 - MPMX19_06801 0.25 -0.8
65,962 - MPMX19_06801 0.25 -1.1
65,962 - MPMX19_06801 0.25 -0.1
65,962 - MPMX19_06801 0.25 -0.7
65,962 - MPMX19_06801 0.25 +0.2
65,962 - MPMX19_06801 0.25 +0.9
65,962 - MPMX19_06801 0.25 +0.1
66,234 + MPMX19_06801 0.46 -2.4
66,234 + MPMX19_06801 0.46 -1.5
66,234 + MPMX19_06801 0.46 -0.3
66,234 + MPMX19_06801 0.46 -0.5
66,234 + MPMX19_06801 0.46 -0.3
66,234 + MPMX19_06801 0.46 -0.5
66,234 + MPMX19_06801 0.46 +1.2
66,234 + MPMX19_06801 0.46 -0.5
66,234 + MPMX19_06801 0.46 +0.0
66,234 + MPMX19_06801 0.46 +0.5
66,234 + MPMX19_06801 0.46 -1.3
66,235 - MPMX19_06801 0.46 -1.0
66,235 - MPMX19_06801 0.46 +0.6
66,235 - MPMX19_06801 0.46 -1.3
66,235 - MPMX19_06801 0.46 -1.9
66,235 - MPMX19_06801 0.46 -0.9
66,235 - MPMX19_06801 0.46 -0.4
66,235 - MPMX19_06801 0.46 -0.3
66,235 - MPMX19_06801 0.46 -1.5
66,235 - MPMX19_06801 0.46 +0.6
66,235 - MPMX19_06801 0.46 +0.2
66,379 - MPMX19_06801 0.57 +0.9
66,456 + MPMX19_06801 0.62 -0.6
66,456 + MPMX19_06801 0.62 -1.3
66,457 - MPMX19_06801 0.63 +0.4
66,541 - MPMX19_06801 0.69 +1.1
66,541 - MPMX19_06801 0.69 -0.9
66,772 - MPMX19_06801 0.86 +0.2
66,772 - MPMX19_06801 0.86 -2.2
66,772 - MPMX19_06801 0.86 -1.3
66,772 - MPMX19_06801 0.86 -0.7
66,772 - MPMX19_06801 0.86 -0.1
66,772 - MPMX19_06801 0.86 +0.2
66,849 + +0.5
66,849 + +0.4
66,849 + +0.7
66,850 - -0.2
66,850 - -0.6
66,850 - -0.1
66,850 - +0.7
66,850 - -0.9
67,646 + MPMX19_06803 0.11 -1.2
67,647 - MPMX19_06803 0.11 -0.2
67,647 - MPMX19_06803 0.11 +0.2
67,715 - MPMX19_06803 0.18 -0.7
67,847 + MPMX19_06803 0.31 -0.3
67,847 + MPMX19_06803 0.31 -0.3
67,847 + MPMX19_06803 0.31 -0.2
67,847 + MPMX19_06803 0.31 +0.1
67,847 + MPMX19_06803 0.31 +0.7
67,847 + MPMX19_06803 0.31 -0.6
67,847 + MPMX19_06803 0.31 +0.2
67,848 - MPMX19_06803 0.31 -0.3
67,848 - MPMX19_06803 0.31 +0.0
67,848 - MPMX19_06803 0.31 -0.8
67,848 - MPMX19_06803 0.31 -0.0
67,850 + MPMX19_06803 0.31 +0.3
67,850 + MPMX19_06803 0.31 +0.4
67,850 + MPMX19_06803 0.31 -0.3
67,851 - MPMX19_06803 0.31 -0.4
67,851 - MPMX19_06803 0.31 -1.3
67,851 - MPMX19_06803 0.31 +0.7
67,851 - MPMX19_06803 0.31 +0.2

Or see this region's nucleotide sequence